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Setting up cloudgene instance for polygenic scoring #40

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fronay opened this issue Nov 10, 2024 · 0 comments
Open

Setting up cloudgene instance for polygenic scoring #40

fronay opened this issue Nov 10, 2024 · 0 comments

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@fronay
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fronay commented Nov 10, 2024

Thanks for the brand new version of imputationserver!
How does one set this up locally to execute / enable the polygenic scoring pipeline on top of imputation, if using the ./cloudgene server command?

(I realise one can enable pgs in the nextflow.config file, but presumably there are other settings to tick + one would also have to download the catalogue to the correct reference path, not clear to me from the documentation what best practices are intended.)

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