Michigan Imputation Server 1.1.8

• Update Minimac4 to version 1.0.1
• Add Phasing-Only mode

Michigan Imputation Server 1.1.7

• new Minimac4 Release (statgen/Minimac4@aab7651)
• add population to statistics

Michigan Imputation Server 1.1.6

• fixes bug with file ending (#7)

Michigan Imputation Server 1.1.5

• fix hg38 typo in yaml

Michigan Imputation Server 1.1.4

• Check for invalid chrX alleles

Michigan Imputation Server 1.1.3

• Added Minimac4 support
• Improved and optimized Quality Control
• Added Chromosome X support for eagle2 (PAR1, PAR2, nonPAR)
• Improved security (AES, password strength, hash security)
• Improved QC Report (Density Plot)

Michigan Imputation Server 1.0.3

• Updated documentation
• Removed non password-friendly characters
• Improve error handling for chromosome X files
• Updated to Cloudgene v1.25.0

Michigan Imputation Server 1.0.2

• Improved chrX error handling (see #1)
• Minor changes in password complexity
• Update to latest Java 8

Michigan Imputation Server 1.1.0

• based on Cloudgene v1.22.0
• supporting Minimac4 (68622c6f66715e134c7c9a7ee5c4409bc2563460)
• executing Quality Control step directly in Input Validation
• Providing chrX Workflow for eagle2 only (PAR1, PAR2, nonPAR)
• Improved security (AES, password strength, hash security)
• Improved QC Report (Density Plot)
• Improved test coverage

Michigan Imputation Server 1.0.1

• updated to Cloudgene 0.1.22
• uses eagle v2.3.2 (including --outputUnphased)
• improved zip password security
• supports AES 256 encryption method
• optional job name
• R density plot