Remove mandatory eagle & qcFilter yaml option

genepi · Aug 13, 2019 · 49a2189 · 49a2189
1 parent fa58a7d
commit 49a2189
Showing 1 changed file with 1 addition and 7 deletions.
diff --git a/src/main/java/genepi/imputationserver/util/RefPanelList.java b/src/main/java/genepi/imputationserver/util/RefPanelList.java
@@ -55,14 +55,10 @@ public RefPanel getById(String id, Object properties) throws IOException {
 
 			if (map.get("mapEagle") != null) {
 				panel.setMapEagle(map.get("mapEagle").toString());
-			} else {
-				throw new IOException("Property 'mapEagle' not found in cloudgene.yaml.");
 			}
 
 			if (map.get("refEagle") != null) {
 				panel.setRefEagle(map.get("refEagle").toString());
-			} else {
-				throw new IOException("Property 'refEagle' not found in cloudgene.yaml.");
 			}
 
 			if (map.get("populations") != null) {
@@ -77,11 +73,9 @@ public RefPanel getById(String id, Object properties) throws IOException {
 			} else {
 				throw new IOException("Property 'samples' not found in cloudgene.yaml.");
 			}
-			
+
 			if (map.get("qcFilter") != null) {
 				panel.setQcFilter((Map<String, String>) map.get("qcFilter"));
-			} else {
-				throw new IOException("Property 'qcFilter' not found in cloudgene.yaml.");
 			}
 
 			// optional parameters