Fixing mapping of prefixes to RDF URIs with @lpalbou

metadata/db-xrefs.yaml

@@ -1224,7 +1224,7 @@
       example_url: http://www.ebi.ac.uk/complexportal/complex/EBI-10205244
 - database: InterPro
   name: InterPro database of protein domains and motifs
-  rdf_uri_prefix: https://registry.identifiers.org/registry/interpro
+  rdf_uri_prefix: http://identifiers.org/interpro/
   synonyms:
     - INTERPRO
     - IPR
@@ -1442,7 +1442,7 @@
       example_url: https://maizegdb.org/gene_center/gene/12098
 - database: MaizeGDB_Locus
   name: MaizeGDB
-  rdf_uri_prefix: https://registry.identifiers.org/registry/maizegdb.locus
+  rdf_uri_prefix: http://identifiers.org/maizegdb.locus/
   generic_urls:
     - https://www.maizegdb.org/
   entity_types:
@@ -1527,7 +1527,7 @@
   name: Metabolic Encyclopedia of metabolic and other pathways
   synonyms:
     - METACYC
-  rdf_uri_prefix: https://registry.identifiers.org/registry/metacyc.reaction
+  rdf_uri_prefix: http://identifiers.org/metacyc.reaction/
   generic_urls:
     - http://metacyc.org/
   entity_types:
@@ -1556,7 +1556,7 @@
       example_id: MGD:Adcy9
 - database: MGI
   name: Mouse Genome Informatics
-  rdf_uri_prefix: https://registry.identifiers.org/registry/mgi
+  rdf_uri_prefix: http://identifiers.org/mgi/
   generic_urls:
     - http://www.informatics.jax.org/
   entity_types:
@@ -1631,7 +1631,7 @@
     - GeneID
     - LocusID
     - NCBI_Gene
-  rdf_uri_prefix: https://registry.identifiers.org/registry/ncbigene
+  rdf_uri_prefix: http://identifiers.org/ncbigene/
   generic_urls:
     - http://www.ncbi.nlm.nih.gov/
   entity_types:
@@ -1753,7 +1753,7 @@
       type_id: BET:0000000
 - database: PANTHER
   name: Protein ANalysis THrough Evolutionary Relationships Classification System
-  rdf_uri_prefix: https://registry.identifiers.org/registry/panther.family
+  rdf_uri_prefix: http://identifiers.org/panther.family/
   generic_urls:
     - http://www.pantherdb.org/
   entity_types:
@@ -1950,7 +1950,7 @@
       type_id: BET:0000000
 - database: PomBase
   name: PomBase
-  rdf_uri_prefix: https://registry.identifiers.org/registry/pombase
+  rdf_uri_prefix: http://identifiers.org/pombase/
   generic_urls:
     - https://www.pombase.org/
   entity_types:
@@ -2121,7 +2121,7 @@
   synonyms:
     - REACTOME
     - REAC
-  rdf_uri_prefix: https://registry.identifiers.org/registry/reactome
+  rdf_uri_prefix: http://identifiers.org/reactome/
   generic_urls:
     - https://www.reactome.org/
   entity_types:
@@ -2193,7 +2193,7 @@
   synonyms:
     - RAD
     - RGDID
-  rdf_uri_prefix: https://registry.identifiers.org/registry/rgd
+  rdf_uri_prefix: http://identifiers.org/rgd/
   generic_urls:
     - https://rgd.mcw.edu/
   entity_types:
@@ -2293,7 +2293,7 @@
   name: Saccharomyces Genome Database
   synonyms:
     - SGDID
-  rdf_uri_prefix: https://registry.identifiers.org/registry/sgd
+  rdf_uri_prefix: http://identifiers.org/sgd/
   generic_urls:
     - http://www.yeastgenome.org/
   entity_types:
@@ -2327,7 +2327,7 @@
   name: Sol Genomics Network
   synonyms:
     - SGN_gene
-  rdf_uri_prefix: https://registry.identifiers.org/registry/sgn
+  rdf_uri_prefix: http://identifiers.org/sgn/
   generic_urls:
     - https://www.sgn.cornell.edu/
   entity_types:
@@ -2449,7 +2449,7 @@
       type_id: BET:0000000
 - database: TAIR
   name: The Arabidopsis Information Resource
-  rdf_uri_prefix: https://registry.identifiers.org/registry/tair.locus
+  rdf_uri_prefix: http://identifiers.org/tair.locus/
   generic_urls:
     - http://www.arabidopsis.org/
   entity_types:
@@ -2498,7 +2498,7 @@
       example_url: http://www.tcdb.org/tcdb/index.php?tc=9.A.4.1.1
 - database: TGD
   name: Tetrahymena Genome Database
-  rdf_uri_prefix: https://registry.identifiers.org/registry/tgd
+  rdf_uri_prefix: http://identifiers.org/tgd/
   generic_urls:
     - http://www.ciliate.org/
   entity_types:
@@ -2651,7 +2651,7 @@
 - database: UniProtKB
   name: Universal Protein Knowledgebase
   description: A central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR database
-  rdf_uri_prefix: https://registry.identifiers.org/registry/uniprot
+  rdf_uri_prefix: http://identifiers.org/uniprot
   generic_urls:
     - http://www.uniprot.org
   entity_types:
@@ -2710,7 +2710,7 @@
   name: WormBase database of nematode biology
   synonyms:
     - WormBase
-  rdf_uri_prefix: https://registry.identifiers.org/registry/wb
+  rdf_uri_prefix: http://identifiers.org/wormbase/    ### TODO: identifiers.org uses /wb/, but we have /wormbase/ in Noctua
   generic_urls:
     - http://www.wormbase.org/
   entity_types:
@@ -2807,7 +2807,7 @@
       example_url: http://en.wikipedia.org/wiki/Endoplasmic_reticulum
 - database: Xenbase
   name: Xenbase
-  rdf_uri_prefix: https://registry.identifiers.org/registry/xenbase
+  rdf_uri_prefix: http://identifiers.org/xenbase/
   generic_urls:
     - http://www.xenbase.org/
   entity_types:
@@ -2849,7 +2849,7 @@
     - http://citgenedb.yubiolab.org
 - database: ZFIN
   name: Zebrafish Information Network
-  rdf_uri_prefix: https://registry.identifiers.org/registry/zfin
+  rdf_uri_prefix: http://identifiers.org/zfin/
   generic_urls:
     - http://zfin.org/
   entity_types: