- Version 1.0 is as published in BMC Bioinformatics 17(1) doi: 10.1186/s12859-016-1284-2
- Version 1.1 : bug correction in header writing in paired end mode with ENSURE_IDENTICAL_HEADER_NAMES=true
- Version 1.2 : change the logic of sample selection in PE when barcodes are present in both reads and redundant. In the rare situation where barcode matching resolve to 2 different samples with no mismatch in both cases, the code could assign the PE reads always to the same sample. To avoid this is the future, the PE reads are now unassigned in this very special situation.