From f7fb892f2a162b56c1ea876d9d129157402cd045 Mon Sep 17 00:00:00 2001
From: alberta <adrien.albert@unige.ch>
Date: Thu, 18 Jul 2024 16:01:33 +0200
Subject: [PATCH] adding easyconfigs: kilosort-4.0.13-foss-2022a.eb

---
 .../c/CMake/CMake-3.23.1-GCC-11.3.0.eb        | 30 ++++++++++++++
 .../k/kilosort/kilosort-4.0.13-foss-2022a.eb  | 40 +++++++++++++++++++
 .../scikit-learn-1.2.2-foss-2022a.eb          | 33 +++++++++++++++
 3 files changed, 103 insertions(+)
 create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.23.1-GCC-11.3.0.eb
 create mode 100644 easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
 create mode 100644 easybuild/easyconfigs/s/scikit-learn/scikit-learn-1.2.2-foss-2022a.eb

diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.23.1-GCC-11.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-3.23.1-GCC-11.3.0.eb
new file mode 100644
index 00000000000..ed7b5a43dee
--- /dev/null
+++ b/easybuild/easyconfigs/c/CMake/CMake-3.23.1-GCC-11.3.0.eb
@@ -0,0 +1,30 @@
+name = 'CMake'
+version = '3.23.1'
+
+homepage = 'https://www.cmake.org'
+
+description = """
+ CMake, the cross-platform, open-source build system.  CMake is a family of
+ tools designed to build, test and package software.
+"""
+
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
+
+source_urls = ['https://www.cmake.org/files/v%(version_major_minor)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['33fd10a8ec687a4d0d5b42473f10459bb92b3ae7def2b745dc10b192760869f3']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+dependencies = [
+    ('ncurses', '6.3'),
+    ('zlib', '1.2.12'),
+    ('bzip2', '1.0.8'),
+    ('cURL', '7.83.0'),
+    ('libarchive', '3.6.1'),
+    ('OpenSSL', '1.1', '', SYSTEM),
+]
+
+moduleclass = 'devel'
\ No newline at end of file
diff --git a/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb b/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
new file mode 100644
index 00000000000..f8e9e3c7a9c
--- /dev/null
+++ b/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
@@ -0,0 +1,40 @@
+easyblock = 'PythonBundle'
+
+name = 'kilosort'
+version = '4.0.13'
+homepage = 'https://github.com/MouseLand/Kilosort'
+description = """
+Kilosort4 is a Python package for spike sorting on GPUs with template matching.
+The software uses new graph-based approaches to clustering that improve performance
+compared to previous versions
+"""
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('PyTorch', '1.12.1', '-CUDA-11.7.0'),
+    ('SciPy-bundle', '2022.05'),
+    ('matplotlib', '3.5.2'),
+    ('h5py', '3.7.0'),
+    ('scikit-learn', '1.2.2'),
+    ('tqdm', '4.64.0'),
+    ('numba', '0.56.4', '-CUDA-11.7.0'),
+]
+
+use_pip = True
+exts_list = [
+    ('faiss-cpu', '1.8.0', {
+        'modulename': 'faiss',
+        'source_urls': ['https://files.pythonhosted.org/packages/06/f0/47615aeed86433e6ed84ea1c5e6fc650723fead0d7c30d56c78689bdb0b6/'],
+        'sources': ['faiss_cpu-1.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl'],
+        'checksums': ['51aaef5a1255d0ea88ea7e52a2415f98c5dd2dd9cec10348d55136541eeec99f'],
+    }),
+    (name, version, {
+        'checksums': ['6b3c24290a21f310a70f1ec4454d41c8a111babda145ccf1ec3f12046a48b5f8'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'tools'
diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-1.2.2-foss-2022a.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-1.2.2-foss-2022a.eb
new file mode 100644
index 00000000000..39fe00e65f8
--- /dev/null
+++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-1.2.2-foss-2022a.eb
@@ -0,0 +1,33 @@
+easyblock = 'PythonBundle'
+
+name = 'scikit-learn'
+version = '1.2.2'
+
+homepage = 'https://scikit-learn.org/stable/index.html'
+description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world,
+building upon numpy, scipy, and matplotlib. As a machine-learning module,
+it provides versatile tools for data mining and analysis in any field of science and engineering.
+It strives to be simple and efficient, accessible to everybody, and reusable in various contexts."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('SciPy-bundle', '2022.05'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    ('sklearn', '0.0', {
+        'checksums': ['e23001573aa194b834122d2b9562459bf5ae494a2d59ca6b8aa22c85a44c0e31'],
+    }),
+    ('joblib', '1.1.1'),
+    (name, version, {
+        'modulename': 'sklearn',
+        'checksums': ['8429aea30ec24e7a8c7ed8a3fa6213adf3814a6efbea09e16e0a0c71e1a1a3d7'],
+    }),
+]
+
+moduleclass = 'data'
\ No newline at end of file