From b9cdfec55cef2f4ef1591aa69f5a8d9f697cc995 Mon Sep 17 00:00:00 2001
From: alberta <adrien.albert@unige.ch>
Date: Thu, 18 Jul 2024 16:04:21 +0200
Subject: [PATCH] adding easyconfigs: kilosort-4.0.13-foss-2022a.eb

---
 .../k/kilosort/kilosort-4.0.13-foss-2022a.eb  | 40 +++++++++++++++++++
 1 file changed, 40 insertions(+)
 create mode 100644 easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb

diff --git a/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb b/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
new file mode 100644
index 00000000000..f8e9e3c7a9c
--- /dev/null
+++ b/easybuild/easyconfigs/k/kilosort/kilosort-4.0.13-foss-2022a.eb
@@ -0,0 +1,40 @@
+easyblock = 'PythonBundle'
+
+name = 'kilosort'
+version = '4.0.13'
+homepage = 'https://github.com/MouseLand/Kilosort'
+description = """
+Kilosort4 is a Python package for spike sorting on GPUs with template matching.
+The software uses new graph-based approaches to clustering that improve performance
+compared to previous versions
+"""
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('PyTorch', '1.12.1', '-CUDA-11.7.0'),
+    ('SciPy-bundle', '2022.05'),
+    ('matplotlib', '3.5.2'),
+    ('h5py', '3.7.0'),
+    ('scikit-learn', '1.2.2'),
+    ('tqdm', '4.64.0'),
+    ('numba', '0.56.4', '-CUDA-11.7.0'),
+]
+
+use_pip = True
+exts_list = [
+    ('faiss-cpu', '1.8.0', {
+        'modulename': 'faiss',
+        'source_urls': ['https://files.pythonhosted.org/packages/06/f0/47615aeed86433e6ed84ea1c5e6fc650723fead0d7c30d56c78689bdb0b6/'],
+        'sources': ['faiss_cpu-1.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl'],
+        'checksums': ['51aaef5a1255d0ea88ea7e52a2415f98c5dd2dd9cec10348d55136541eeec99f'],
+    }),
+    (name, version, {
+        'checksums': ['6b3c24290a21f310a70f1ec4454d41c8a111babda145ccf1ec3f12046a48b5f8'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'tools'