Merge branch 'main' into issue-456 #1339
Workflow file for this run
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name: Python CQA | |
on: [push, pull_request] | |
# TODO: separate lint and test jobs; lint first, test "needs" lint | |
# https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobs | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.10", "3.11", "3.12"] | |
env: | |
SEQREPO_ROOT_DIR: ./tests/data/seqrepo/latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: recursive | |
- uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-test-${{ hashFiles('pyproject.toml') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Update pip and setuptools | |
run: | | |
python -m pip install --upgrade pip setuptools | |
- name: Install dependencies | |
run: | | |
pip install -e .[dev,extras] | |
- name: Test with pytest | |
run: | | |
python -m pytest | |
precommit_hooks: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
- uses: pre-commit/[email protected] |