It's Fernando Pozo's GitHub. I use to work in Bioinformatics, Data Science and Machine Learning tasks! 📊💻.
- trifid: Machine learning for protein isoform genome annotation.
- covid-rt: Bayesian estimation of virus effective reproduction number.
- Chest-X-Ray-with-Radiologist-AI: Web app for Chest X-Ray pathology assistance using CNNs and NLP.
- cxr-img-classifier: Pytorch Lighning + config + logger for an user friendly image binary classification with DL.
- pyops: Python Project template designed for a cool variety of projects
- nf-exec: Some Nextflow workflow management useful practices.
- appris-rnaseq: Comprehensive and extremely easy to manage RNA-seq pipeline.
- qsplice: Exon junction scores from RNA-seq data for the whole genome.
- phosphoproteomics: Several analysis to study post-translational modifications in proteins.
- ismb-presentation: Materials for presenting my PhD. thesis work in the biggest conference in Bioinformatics.
- eccb-22: Materials for the presentation at 21st European Conference on Computational Biology (ECCB).
- hp-pfamscan: HPC implementation protein families finder.
- advanced-bioinformatics-course: E2e university course in Bioinformatics applied to Genomics.
- machine-learning-in-healthcare: E2e university course in Machine Learning for Healthcare.
- Why and how should you start learning bioinformatics?
- Assessing the functional relevance of splice isoforms
- APPRIS principal isoforms and MANE Select transcripts in clinical variant interpretation
