IntracellularRecordingsTable

[bendichter]

In most intracellular electrophysiology patch clamp experiments, there is a stimulus (clamp) and a response. For example in https://neurosift.app/?p=/nwb&url=https://api.dandiarchive.org/api/assets/f7388d54-0525-42f2-b026-04e06a684717/download/&dandisetId=000245&dandisetVersion=draft there is we see 56 different current clamp responses (in acquisition) and in stimulus/presentation you see 56 CurrentClampStimulusSeries stimuli. The mapping between the stimuli and the response is in the following tables in /intracellular_ephys/

• intracellular_recordings | IntracellularRecordingsTable
• simultaneous_recordings | SimultaneousRecordingsTable
• sequential_recordings | SequentialRecordingsTable

None of these are rendering well in Neurosift, so the organization of the stimulus and response is lost.

The first level of organization is the IntracellularRecordingsTable, which holds the electrode, stimulus, and response for reach recording. This is a dataframe rendering in Python:

The tables does not render in Neurosift at all:

The next two levels, SimultaneousRecrdingsTable, and SequentialRecordingsTable do technically render but both skip the columns that are DynamicTableRegions which hold important links to the lower tables.

I think the lowest hanging fruit here is probably to render the IntracellularRecordingsTable and provide a button on each row which launches a view of the corresponding stimulus and response each in its own window.

[magland]

As a start, you can at least view that table now

https://neurosift.app/?p=/nwb&url=https://api.dandiarchive.org/api/assets/f7388d54-0525-42f2-b026-04e06a684717/download/&dandisetId=000245&dandisetVersion=draft&tab=neurodata-item:/general/intracellular_ephys/intracellular_recordings|IntracellularRecordingsTable

I'm not going to add a button right now... but that shouldn't be too difficult.

[bendichter]

progress! The table looks nice