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Bases: ColumnCorpus
Original NCBI disease corpus containing disease annotations.
For further information see @@ -1988,24 +1988,24 @@
Bases: HunerDataset
HUNER version of the NCBI corpus containing disease annotations.
str
Bases: ColumnCorpus
Base class to support the SCAI chemicals and disease corpora.
Initialize the SCAU corpus.
Path
Bases: ScaiCorpus
Original SCAI chemicals corpus containing chemical annotations.
For further information see Kolářik et al.: Chemical Names: @@ -2077,7 +2077,7 @@
Path
Path
Bases: ScaiCorpus
Original SCAI disease corpus containing disease annotations.
For further information see Gurulingappa et al.: An Empirical @@ -2112,7 +2112,7 @@
Path
Path
Bases: HunerDataset
HUNER version of the SCAI chemicals corpus containing chemical annotations.
str
Bases: HunerDataset
HUNER version of the SCAI chemicals corpus containing chemical annotations.
str
Bases: ColumnCorpus
Original OSIRIS corpus containing variation and gene annotations.
For further information see Furlong et al.: Osiris v1.2: a named @@ -2201,7 +2201,7 @@
Initialize the OSIRIS corpus.
Path
Bases: HunerDataset
HUNER version of the OSIRIS corpus containing (only) gene annotations.
str
Bases: ColumnCorpus
S800 corpus.
For further information see @@ -2272,7 +2272,7 @@
Initialize the S800 corpus.
Bases: HunerDataset
HUNER version of the S800 corpus containing species annotations.
str
Bases: ColumnCorpus
Original GPRO corpus containing gene annotations.
For further information see: https://biocreative.bioinformatics.udel.edu/tasks/biocreative-v/gpro-detailed-task-description/
Initialize the GPRO corpus.
Path
Path
Bases: HunerDataset
HUNER version of the GPRO corpus containing gene annotations.
str
Bases: ColumnCorpus
Original DECA corpus containing gene annotations.
For further information see Wang et al.: Disambiguating the @@ -2422,7 +2422,7 @@
Initialize the DECA corpus.
Path
Bases: HunerDataset
HUNER version of the DECA corpus containing gene annotations.
str
Bases: ColumnCorpus
Original FSU corpus containing protein and derived annotations.
For further information see @@ -2495,7 +2495,7 @@
Initialize the FSU corpus.
Path
Bases: HunerDataset
HUNER version of the FSU corpus containing (only) gene annotations.
str
Return the pre-defined sentence splitter if defined, otherwise return None.
Bases: ColumnCorpus
Original CRAFT corpus (version 2.0) containing all but the coreference and sections/typography annotations.
For further information see Bada et al.: Concept annotation in the @@ -2577,7 +2577,7 @@
Initialize the CRAFT corpus.
Path
Bases: ColumnCorpus
Original Biosemantics corpus.
For further information see Akhondi et al.: Annotated chemical @@ -2623,7 +2623,7 @@
Initialize the Biosemantics corpus.
Path
Bases: ColumnCorpus
Original BioCreative-II-GM corpus containing gene annotations.
For further information see Smith et al.: Overview of @@ -2673,7 +2673,7 @@
Initialize the BioCreative-II-GM corpus.
Path
Bases: HunerDataset
HUNER version of the BioCreative-II-GM corpus containing gene annotations.
str
Bases: ColumnCorpus
Original CEMP corpus containing chemical annotations.
For further information see: https://biocreative.bioinformatics.udel.edu/tasks/biocreative-v/cemp-detailed-task-description/
Initialize the CEMP corpus.
Path
Path
Bases: HunerDataset
HUNER version of the CEMP corpus containing chemical annotations.
str