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pyproject.toml
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pyproject.toml
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[build-system] # Require setuptool version due to https://github.com/pypa/setuptools/issues/2938
requires = ["setuptools>=61.0.0", "wheel"]
[project]
name = "fenics-beat"
version = "0.1.1"
description = "Library to run cardiac EP simulations"
authors = [{name = "Henrik Finsberg", email = "[email protected]"}]
license = {text = "MIT"}
readme = "README.md"
requires-python = ">=3.8"
keywords = ["cardiac", "electrophysiology"]
dependencies = [
"numpy<=1.21.5",
"pint",
]
[project.urls]
Homepage = "https://finsberg.github.io/fenics-beat"
Documentation = "https://finsberg.github.io/fenics-beat"
Source = "https://github.com/finsberg/fenics-beat"
Tracker = "https://github.com/finsberg/fenics-beat/issues"
[project.optional-dependencies]
test = [
"pytest",
"pytest-cov",
"gotranx",
"numba",
]
dev = [
"pdbpp",
"ipython",
"bump2version",
"pre-commit",
]
pypi = [
"twine",
"build"
]
demos = [
"cardiac-geometries",
"ldrb",
"gotranx",
"ap_features",
"numba",
"jupyter",
"pyvista[all]>=0.43.0",
"trame-vuetify",
"ipywidgets",
"fractal-tree",
]
docs = [
"jupyter-book",
"jupytext",
"jupyterlab_myst",
"sphinxcontrib-bibtex",
"fenics-beat[demos]"
]
all = [
"fenics-beat[test]",
"fenics-beat[docs]",
"fenics-beat[pypi]",
"fenics-beat[dev]",
"fenics-beat[demos]"
]
[tool.setuptools]
license-files = [
"LICENSE",
"licenses/LICENSE_dolfin_pyvista_adapter",
]
[tool.pytest.ini_options]
markers = [
"skip_in_parallel: Skip test when running in parallel",
]
[tool.ruff]
# Exclude a variety of commonly ignored directories.
exclude = [
".bzr",
".direnv",
".eggs",
".git",
".hg",
".mypy_cache",
".nox",
".pants.d",
".pytype",
".ruff_cache",
".svn",
".tox",
".venv",
"__pypackages__",
"_build",
"buck-out",
"build",
"dist",
"node_modules",
"venv",
"demos",
]
# Same as Black.
line-length = 100
# Allow unused variables when underscore-prefixed.
# Assume Python 3.10.
target-version = "py310"
[tool.ruff.lint]
# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
select = ["E", "F"]
ignore = ["E402", "E741", "E743", "E731"]
# Allow autofix for all enabled rules (when `--fix`) is provided.
fixable = ["A", "B", "C", "D", "E", "F"]
unfixable = []
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
[tool.ruff.lint.mccabe]
# Unlike Flake8, default to a complexity level of 10.
max-complexity = 10
[tool.bumpversion]
allow_dirty = false
commit = true
message = "Bump version: {current_version} → {new_version}"
tag = true
sign_tags = false
tag_name = "v{new_version}"
tag_message = "Bump version: {current_version} → {new_version}"
current_version = "0.1.1"
[[tool.bumpversion.files]]
filename = "pyproject.toml"
search = 'version = "{current_version}"'
replace = 'version = "{new_version}"'
[[tool.bumpversion.files]]
filename = "CITATION.cff"
search = 'version: "{current_version}"'
replace = 'version: "{new_version}"'
[[tool.bumpversion.files]]
filename = "CITATION.cff"
search = 'date-released: "\d{{4}}-\d{{2}}-\d{{2}}"'
replace = 'date-released: "{now:%Y-%m-%d}"'
regex = true