DESCRIPTION

Package: CALANGO
Type: Package
Title: Comparative Analysis with Annotation-Based Genomic Components
Version: 1.0.20
Date: 2024-09-03
Language: en-US
Authors@R: c(person("Francisco", "Lobo",
    email   = "franciscolobo@gmail.com",
    role    = c("aut")),
    person("Felipe", "Campelo",
    email   = "fcampelo@gmail.com",
    role    = c("aut", "cre")),
    person("Jorge Augusto", "Hongo",
    email   = "jorgeahongo@gmail.com",
    role    = "aut"),
    person("Giovanni", "Marques de Castro",
    email   = "giomcastro@gmail.com",
    role    = "aut"),
    person("Gabriel", "Almeida",
    email   = "gabriel.magno@gmail.com",
    role    = c("sad", "dnc")))
Maintainer: Felipe Campelo <fcampelo@gmail.com>
Description: A first-principle, phylogeny-aware comparative genomics tool for 
             investigating associations between terms used to annotate genomic
             components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative 
             or rank variables such as number of cell types, genome size, or 
             density of specific genomic elements. See the project website for 
             more information, documentation and examples, and 
             <doi:10.1016/j.patter.2023.100728> for the full paper.
License: GPL-2
Depends: R (>= 3.6.0)
Imports: assertthat (>= 0.2.1),
         pbmcapply (>= 1.5.0),
         ape (>= 5.3.0),
         rmarkdown (>= 2.1.0),
         nlme (>= 3.1.0),
         BiocManager (>= 1.30.10),
         dendextend (>= 1.15.2),
         heatmaply (>= 1.1.0),
         ggplot2 (>= 2.3.2),
         plotly (>= 4.9.2),
         DT (>= 0.13),
         htmltools (>= 0.5.0),
         htmlwidgets (>= 1.5.1),
         pkgdown (>= 1.5.1),
         knitr (>= 1.28)
Suggests: AnnotationDbi,
          KEGGREST,
          GO.db
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://labpackages.github.io/CALANGO/
BugReports: https://github.com/fcampelo/CALANGO/issues/
VignetteBuilder: knitr