pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <!-- meta data -->
  <parent>
        <artifactId>master</artifactId>
        <groupId>org.mskcc.cbio</groupId>
        <!-- project version is generated through git or can be passed as
             PROJECT_VERSION env variable (see version.sh) -->
        <version>0-unknown-version-SNAPSHOT</version>
  </parent>
  <modelVersion>4.0.0</modelVersion>
  <artifactId>scripts</artifactId>
  <name>Portal Scripts</name>
  <description>Scripts Package for Portal</description>

  <dependencies>
    <dependency>
      <groupId>org.mskcc.cbio</groupId>
      <artifactId>core</artifactId>
      <version>${project.version}</version>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <!-- this plugin lets us grab shared resources from our parent -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-resources-plugin</artifactId>
        <executions>
          <execution>
            <id>copy-parent-resources</id>
            <phase>process-sources</phase>
            <goals>
              <goal>copy-resources</goal>
            </goals>
            <configuration>
              <outputDirectory>${project.build.directory}/classes</outputDirectory>
              <resources>
                <resource>
                  <directory>${PORTAL_HOME}/src/main/resources</directory>
                  <filtering>true</filtering>
                  <includes>
                    <include>**/*.properties</include>
                  </includes>
                  <excludes>
                    <exclude>**/portal.properties.*</exclude>
                    <exclude>**/log4j.properties.*</exclude>
                    <exclude>**/maven.properties.*</exclude>
                    <exclude>**/*.EXAMPLE</exclude>
                  </excludes>
                </resource>
              </resources>
            </configuration>
          </execution>
        </executions>
      </plugin>
      
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-shade-plugin</artifactId>
        <version>3.2.4</version>
        <executions>
          <execution>
            <phase>package</phase>
            <goals>
              <goal>shade</goal>
            </goals>
            <configuration>
              <createDependencyReducedPom>false</createDependencyReducedPom>
              <artifactSet>
                <excludes>
                  <exclude>org.bouncycastle:bcprov-jdk15</exclude>
                </excludes>
              </artifactSet>
              <transformers>
                <transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
                  <resource>META-INF/spring.handlers</resource>
                </transformer>
                <transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
                  <resource>META-INF/spring.schemas</resource>
                </transformer>
              </transformers>
              <filters>
				<filter>
				  <artifact>*:*</artifact>
                  <excludes>
					<exclude>META-INF/*.SF</exclude>
					<exclude>META-INF/*.DSA</exclude>
					<exclude>META-INF/*.RSA</exclude>
                  </excludes>
                </filter>
              </filters>
            </configuration>
          </execution>
        </executions>
      </plugin>
      
    </plugins>

  </build>
</project>