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DEVPROD-13056: fix s3 put skip_existing failures
This commit fixes s3.put's skip_existing parameter to not always fail when a remote file already exists. At the end of s3.put, we check that the length of uploadedFiles matches the length of fileList. If the lengths aren't equal, the command should fail because there was at least one upload error. skip_existing did not append to this list, but these skipped files were expected and should not be errors. To fix this, I added a new slice that tracks files we've skipped separately. The end check now considers both uploaded and skipped files to determine if there was an error. I've also included a new integration test that checks s3.put with skip_existing set to true.
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