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142, 143, 144, 145, 147, 148, 151, 152], "code": [0, 50, 54, 60, 79, 84, 91, 112, 113, 114, 118, 119, 122, 123, 129, 131, 134, 137, 138, 139, 140, 141, 142, 143, 152, 154], "refer": [0, 4, 9, 37, 38, 40, 43, 45, 48, 49, 52, 60, 62, 66, 67, 68, 73, 76, 80, 86, 87, 94, 95, 107, 111, 114, 115, 116, 120, 121, 122, 123, 124, 127, 128, 133, 143, 144, 147, 148, 151], "altern": [0, 4, 11, 48, 50, 51, 53, 54, 114, 116, 120, 132, 147], "c": [0, 9, 29, 46, 47, 57, 67, 82, 83, 87, 95, 107, 113, 115, 116, 124, 125, 128, 130, 134, 138, 141, 143, 146, 147, 154, 155], "program": [0, 2, 8, 17, 18, 26, 28, 36, 53, 54, 79, 81, 84, 88, 114, 115, 116, 120, 121, 122, 124, 125, 127, 130, 131, 133, 136, 137, 141, 144, 145, 148, 151, 154, 155], "nativ": [0, 118, 124, 128, 134, 137, 138, 143], "hdf5": [0, 4, 81, 89, 97, 107, 110, 114, 115, 116, 122, 123, 124, 125, 126, 127, 128, 130, 131, 132, 133, 134, 137, 138, 143, 147, 148, 152, 155], "command": [0, 78, 103, 104, 107, 118, 121, 122, 124, 125, 128, 132, 134, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 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4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 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121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 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"hypertext-anchors"], [84, "hypertext-anchors"], [85, "hypertext-anchors"], [86, "hypertext-anchors"], [87, "hypertext-anchors"], [88, "hypertext-anchors"], [89, "hypertext-anchors"], [90, "hypertext-anchors"], [91, "hypertext-anchors"], [92, "hypertext-anchors"], [93, "hypertext-anchors"], [95, "hypertext-anchors"], [96, "hypertext-anchors"], [97, "hypertext-anchors"], [98, "hypertext-anchors"], [99, "hypertext-anchors"], [100, "hypertext-anchors"], [101, "hypertext-anchors"], [102, "hypertext-anchors"], [103, "hypertext-anchors"], [104, "hypertext-anchors"], [105, "hypertext-anchors"], [106, "hypertext-anchors"], [107, "hypertext-anchors"], [108, "hypertext-anchors"]], "NXarpes": [[3, "nxarpes"]], "NXcanSAS": [[4, "nxcansas"]], "NXdirecttof": [[5, "nxdirecttof"]], "NXfluo": [[6, "nxfluo"]], "NXindirecttof": [[7, "nxindirecttof"]], "NXiqproc": [[8, "nxiqproc"]], "NXlauetof": [[9, "nxlauetof"]], "NXmonopd": [[10, "nxmonopd"]], "NXmx": [[11, "nxmx"]], "NXrefscan": [[12, "nxrefscan"]], "NXreftof": [[13, "nxreftof"]], "NXsas": [[14, "nxsas"]], "NXsastof": [[15, "nxsastof"]], "NXscan": [[16, "nxscan"]], "NXspe": [[17, "nxspe"]], "NXsqom": [[18, "nxsqom"]], "NXstxm": [[19, "nxstxm"]], "NXtas": [[20, "nxtas"]], "NXtofnpd": [[21, "nxtofnpd"]], "NXtofraw": [[22, "nxtofraw"]], "NXtofsingle": [[23, "nxtofsingle"]], "NXtomo": [[24, "nxtomo"]], "NXtomophase": [[25, "nxtomophase"]], "NXtomoproc": [[26, "nxtomoproc"]], "NXxas": [[27, "nxxas"]], "NXxasproc": [[28, "nxxasproc"]], "NXxbase": [[29, "nxxbase"]], "NXxeuler": [[30, "nxxeuler"]], "NXxkappa": [[31, "nxxkappa"]], "NXxlaue": [[32, "nxxlaue"]], "NXxlaueplate": [[33, "nxxlaueplate"]], "NXxnb": [[34, "nxxnb"]], "NXxrot": [[35, "nxxrot"]], "Application Definitions": [[36, "application-definitions"]], "NXaperture": [[37, "nxaperture"]], "NXattenuator": [[38, "nxattenuator"]], "NXbeam": [[39, "nxbeam"]], "NXbeam_stop": [[40, "nxbeam-stop"]], "NXbending_magnet": [[41, "nxbending-magnet"]], "NXcapillary": [[42, "nxcapillary"]], "NXcite": [[43, "nxcite"]], "NXcollection": [[44, "nxcollection"], [151, "nxcollection"]], "NXcollimator": [[45, "nxcollimator"]], "NXcrystal": [[46, "nxcrystal"]], "NXcylindrical_geometry": [[47, "nxcylindrical-geometry"], [116, "nxcylindrical-geometry"]], "NXdata": [[48, "nxdata"]], "NXdetector": [[49, "nxdetector"]], "NXdetector_group": [[50, "nxdetector-group"]], "NXdetector_module": [[51, "nxdetector-module"]], "NXdisk_chopper": [[52, "nxdisk-chopper"]], "NXentry": [[53, "nxentry"]], "NXenvironment": [[54, "nxenvironment"]], "NXevent_data": [[55, "nxevent-data"]], "NXfermi_chopper": [[56, "nxfermi-chopper"]], "NXfilter": [[57, "nxfilter"]], "NXflipper": [[58, "nxflipper"]], "NXfresnel_zone_plate": [[59, "nxfresnel-zone-plate"]], "NXgeometry": [[60, "nxgeometry"]], "NXgrating": [[61, "nxgrating"]], "NXguide": [[62, "nxguide"]], "NXinsertion_device": [[63, "nxinsertion-device"]], "NXinstrument": [[64, "nxinstrument"]], "NXlog": [[65, "nxlog"]], "NXmirror": [[66, "nxmirror"]], "NXmoderator": [[67, "nxmoderator"]], "NXmonitor": [[68, "nxmonitor"]], "NXmonochromator": [[69, "nxmonochromator"]], "NXnote": [[70, "nxnote"]], "NXobject": [[71, "nxobject"]], "NXoff_geometry": [[72, "nxoff-geometry"], [116, "nxoff-geometry"]], "NXorientation": [[73, "nxorientation"]], "NXparameters": [[74, "nxparameters"]], "NXpdb": [[75, "nxpdb"]], "NXpinhole": [[76, "nxpinhole"]], "NXpolarizer": [[77, "nxpolarizer"]], "NXpositioner": [[78, "nxpositioner"]], "NXprocess": [[79, "nxprocess"]], "NXreflections": [[80, "nxreflections"]], "NXroot": [[81, "nxroot"]], "NXsample": [[82, "nxsample"]], "NXsample_component": [[83, "nxsample-component"]], "NXsensor": [[84, "nxsensor"]], "NXshape": [[85, "nxshape"]], "NXslit": [[86, "nxslit"]], "NXsource": [[87, "nxsource"]], "NXsubentry": [[88, "nxsubentry"]], "NXtransformations": [[89, "nxtransformations"]], "NXtranslation": [[90, "nxtranslation"]], "NXuser": [[91, "nxuser"]], "NXvelocity_selector": [[92, "nxvelocity-selector"]], "NXxraylens": [[93, "nxxraylens"]], "Base Class Definitions": [[94, "base-class-definitions"]], "NXcontainer": [[95, "nxcontainer"]], "NXcsg": [[96, "nxcsg"]], "NXcxi_ptycho": [[97, "nxcxi-ptycho"]], "NXelectrostatic_kicker": [[98, "nxelectrostatic-kicker"]], "NXmagnetic_kicker": [[99, "nxmagnetic-kicker"]], "NXquadric": [[100, "nxquadric"]], "NXquadrupole_magnet": [[101, "nxquadrupole-magnet"]], "NXseparator": [[102, "nxseparator"]], "NXsnsevent": [[103, "nxsnsevent"]], "NXsnshisto": [[104, "nxsnshisto"]], "NXsolenoid_magnet": [[105, "nxsolenoid-magnet"]], "NXsolid_geometry": [[106, "nxsolid-geometry"]], "NXspecdata": [[107, "nxspecdata"]], "NXspin_rotator": [[108, "nxspin-rotator"]], "Contributed Definitions": [[109, "contributed-definitions"], [112, "contributed-definitions"]], "NeXus Class Definitions": [[110, "nexus-class-definitions"]], "Colophon": [[111, "colophon"]], "NeXus Community": [[112, "nexus-community"]], "NeXus Webpage": [[112, "nexus-webpage"]], "Other Ways NeXus Coordinates with the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional Data with Axis Data": [[114, "associating-multi-dimensional-data-with-axis-data"]], "Associating plottable data using attributes applied to the NXdata group": [[114, "associating-plottable-data-using-attributes-applied-to-the-nxdata-group"]], "Examples": [[114, "examples"]], "Associating plottable data by name using the axes attribute": [[114, "associating-plottable-data-by-name-using-the-axes-attribute"]], "Associating plottable data by dimension number using the axis attribute": [[114, "associating-plottable-data-by-dimension-number-using-the-axis-attribute"]], "Introduction to NeXus definitions": [[115, "introduction-to-nexus-definitions"]], "Overview of NeXus definitions": [[115, "overview-of-nexus-definitions"]], "Description": [[115, "description"], [115, "id1"]], "Symbols table": [[115, "symbols-table"]], "Annotated Structure": [[115, "annotated-structure"]], "Names (groups, fields, links, and attributes)": [[115, "names-groups-fields-links-and-attributes"]], "NeXus data type": [[115, "nexus-data-type"]], "Units": [[115, "units"]], "Choice": [[115, "choice"]], "NeXus Design": [[116, "nexus-design"]], "NeXus Objects and Terms": [[116, "nexus-objects-and-terms"]], "Groups": [[116, "groups"]], "Fields": [[116, "fields"]], "Attributes": [[116, "attributes"]], "File attributes": [[116, "file-attributes"]], "Links": [[116, "links"]], "Python h5py code to make NeXus links": [[116, "index-13"]], "External File Links": [[116, "external-file-links"]], "Combining NeXus links and External File Links": [[116, "combining-nexus-links-and-external-file-links"]], "NeXus Base Classes": [[116, "nexus-base-classes"]], "NXdata Facilitates Automatic Plotting": [[116, "nxdata-facilitates-automatic-plotting"]], "Where to Store Metadata": [[116, "where-to-store-metadata"]], "NeXus Application Definitions": [[116, "nexus-application-definitions"]], "NeXus Geometry": [[116, "nexus-geometry"]], "The NeXus Coordinate System": [[116, "the-nexus-coordinate-system"]], "Coordinate Transformations": [[116, "coordinate-transformations"]], "Coordinate Transformation Field And Attributes": [[116, "coordinate-transformation-field-and-attributes"]], "Shape Descriptions": [[116, "shape-descriptions"]], "Detector Shape Descriptions": [[116, "detector-shape-descriptions"]], "Legacy Geometry Descriptions": [[116, "legacy-geometry-descriptions"]], "McStas and NXgeometry System": [[116, "mcstas-and-nxgeometry-system"]], "Simple (Spherical Polar) Coordinate System": [[116, "simple-spherical-polar-coordinate-system"]], "Rules and Underlying File Formats": [[116, "rules-and-underlying-file-formats"]], "About these docs": [[117, "about-these-docs"]], "Example NeXus programs using NAPI": [[118, "example-nexus-programs-using-napi"]], "NAPI Simple 2-D Write Example (C, F77, F90)": [[118, "napi-simple-2-d-write-example-c-f77-f90"]], "NAPI C Example: write simple NeXus file": [[118, "napi-c-example-write-simple-nexus-file"]], "NAPI F77 Example: write simple NeXus file": [[118, "napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, "writing-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "Reading a simple NeXus file using native HDF5 commands in C": [[119, "reading-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "EPICS Area Detector Examples": [[120, "epics-area-detector-examples"]], "HDF5 File Writing Plugin": [[120, "hdf5-file-writing-plugin"]], "configuration files": [[120, "configuration-files"]], "attributes.xml": [[120, "attributes-xml"]], "layout.xml": [[120, "layout-xml"]], "additional configuration": [[120, "additional-configuration"]], "Example view": [[120, "example-view"]], "Python code to store an image in a NeXus file": [[120, "python-code-to-store-an-image-in-a-nexus-file"]], "using the h5py package": [[120, "using-the-h5py-package"]], "using the nexusformat package": [[120, "using-the-nexusformat-package"]], "Visualization": [[120, "visualization"]], "Downloads": [[120, "downloads"], [126, "downloads"]], "Footnotes": [[120, "footnotes"]], "Python Examples using h5py": [[121, "python-examples-using-h5py"]], "Writing the simplest data using h5py": [[121, "writing-the-simplest-data-using-h5py"]], "Complete h5py example writing and reading a NeXus data file": [[121, "complete-h5py-example-writing-and-reading-a-nexus-data-file"]], "Writing the HDF5 file using h5py": [[121, "writing-the-hdf5-file-using-h5py"]], "Reading the HDF5 file using h5py": [[121, "reading-the-hdf5-file-using-h5py"]], "Finding the default plottable data": [[121, "finding-the-default-plottable-data"]], "Plotting the HDF5 file": [[121, "plotting-the-hdf5-file"]], "Links to Data in External HDF5 Files": [[121, "links-to-data-in-external-hdf5-files"]], "file: external_angles.hdf5": [[121, "file-external-angles-hdf5"]], "file: external_counts.hdf5": [[121, "file-external-counts-hdf5"]], "file: external_master.hdf5": [[121, "file-external-master-hdf5"]], "source code: externalExample.py": [[121, "source-code-externalexample-py"]], "downloads": [[121, "downloads"], [122, "downloads"], [123, "downloads"]], "h5py example writing the simplest NeXus data file": [[122, "h5py-example-writing-the-simplest-nexus-data-file"]], "h5py example writing a simple NeXus data file with links": [[123, "h5py-example-writing-a-simple-nexus-data-file-with-links"]], "Examples of writing and reading NeXus data files": [[124, "examples-of-writing-and-reading-nexus-data-files"]], "Code Examples in Various Languages": [[124, "code-examples-in-various-languages"]], "Code Examples that use the NeXus API (NAPI)": [[124, "code-examples-that-use-the-nexus-api-napi"]], "Code that reads NeXus data files": [[124, "code-that-reads-nexus-data-files"]], "Viewing 2-D Data from LRMECS": [[125, "viewing-2-d-data-from-lrmecs"]], "Visualize Using h5dump": [[125, "visualize-using-h5dump"]], "LRMECS lrcs3701 data: h5dump output": [[125, "lrmecs-lrcs3701-data-h5dump-output"]], "Visualize Using HDFview": [[125, "visualize-using-hdfview"]], "LRMECS lrcs3701 data: image": [[125, "lrmecs-lrcs3701-data-image"], [125, "id3"]], "Visualize Using IgorPro": [[125, "visualize-using-igorpro"]], "MATLAB Examples": [[126, "matlab-examples"]], "input.dat": [[126, "input-dat"]], "writing data": [[126, "writing-data"]], "reading data": [[126, "reading-data"]], "writing data file with links": [[126, "writing-data-file-with-links"]], "Frequently Asked Questions": [[127, "frequently-asked-questions"]], "Physical File format": [[128, "physical-file-format"]], "Choice of HDF as Underlying File Format": [[128, "choice-of-hdf-as-underlying-file-format"]], "Mapping NeXus into HDF": [[128, "mapping-nexus-into-hdf"]], "NeXus Repositories": [[129, "nexus-repositories"]], "Brief history of NeXus": [[130, "brief-history-of-nexus"]], "User Manual and Reference Documentation": [[131, "user-manual-and-reference-documentation"]], "Installation": [[132, "installation"], [143, "installation"]], "Precompiled Binary Installation": [[132, "precompiled-binary-installation"]], "Linux RPM Distribution Kits": [[132, "linux-rpm-distribution-kits"]], "Microsoft Windows Installation Kit": [[132, "microsoft-windows-installation-kit"]], "Mac OS X Installation Kit": [[132, "mac-os-x-installation-kit"]], "Source Installation": [[132, "source-installation"]], "NeXus Source Code Distribution": [[132, "nexus-source-code-distribution"]], "Releases": [[132, "releases"]], "NeXus definitions": [[132, "nexus-definitions"]], "Release Notes": [[132, "release-notes"]], "Release Process": [[132, "release-process"]], "Versioning (Tags)": [[132, "versioning-tags"]], "NeXus Introduction": [[133, "nexus-introduction"]], "What is NeXus?": [[133, "what-is-nexus"]], "A Set of Design Principles": [[133, "a-set-of-design-principles"]], "Example of a NeXus File": [[133, "example-of-a-nexus-file"]], "Important Classes": [[133, "important-classes"]], "Simple Example": [[133, "simple-example"]], "A Set of Data Storage Objects": [[133, "a-set-of-data-storage-objects"]], "A Set of Subroutines": [[133, "a-set-of-subroutines"]], "Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, "napi-fortran-77-interface"]], "NAPI Fortran 90 Interface": [[141, "napi-fortran-90-interface"]], "NAPI IDL Interface": [[142, "napi-idl-interface"]], "NAPI Java Interface": [[143, "napi-java-interface"]], "Acknowledgement": [[143, "acknowledgement"]], "Requirements": [[143, "requirements"]], "Installation under Windows": [[143, "installation-under-windows"]], "Installation under Unix": [[143, "installation-under-unix"]], "Running Programs with the NeXus API for Java": [[143, "running-programs-with-the-nexus-api-for-java"]], "Locating the shared libraries": [[143, "locating-the-shared-libraries"]], "Locating jnexus.jar": [[143, "locating-jnexus-jar"]], "Programming with the NeXus API for Java": [[143, "programming-with-the-nexus-api-for-java"]], "Data Writing and Reading": [[143, "data-writing-and-reading"]], "Inquiry Routines": [[143, "inquiry-routines"]], "Known Problems": [[143, "known-problems"]], "On-line Documentation": [[143, "on-line-documentation"]], "NIAC: The NeXus 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142, 143, 144, 145, 147, 148, 151, 152], "code": [0, 50, 54, 60, 79, 84, 91, 112, 113, 114, 118, 119, 122, 123, 129, 131, 134, 137, 138, 139, 140, 141, 142, 143, 152, 154], "refer": [0, 4, 9, 37, 38, 40, 43, 45, 48, 49, 52, 60, 62, 66, 67, 68, 73, 76, 80, 86, 87, 94, 95, 107, 111, 114, 115, 116, 120, 121, 122, 123, 124, 127, 128, 133, 143, 144, 147, 148, 151], "altern": [0, 4, 11, 48, 50, 51, 53, 54, 114, 116, 120, 132, 147], "c": [0, 9, 29, 46, 47, 57, 67, 82, 83, 87, 95, 107, 113, 115, 116, 124, 125, 128, 130, 134, 138, 141, 143, 146, 147, 154, 155], "program": [0, 2, 8, 17, 18, 26, 28, 36, 53, 54, 79, 81, 84, 88, 114, 115, 116, 120, 121, 122, 124, 125, 127, 130, 131, 133, 136, 137, 141, 144, 145, 148, 151, 154, 155], "nativ": [0, 118, 124, 128, 134, 137, 138, 143], "hdf5": [0, 4, 81, 89, 97, 107, 110, 114, 115, 116, 122, 123, 124, 125, 126, 127, 128, 130, 131, 132, 133, 134, 137, 138, 143, 147, 148, 152, 155], "command": [0, 78, 103, 104, 107, 118, 121, 122, 124, 125, 128, 132, 134, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 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4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 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121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 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"hypertext-anchors"], [84, "hypertext-anchors"], [85, "hypertext-anchors"], [86, "hypertext-anchors"], [87, "hypertext-anchors"], [88, "hypertext-anchors"], [89, "hypertext-anchors"], [90, "hypertext-anchors"], [91, "hypertext-anchors"], [92, "hypertext-anchors"], [93, "hypertext-anchors"], [95, "hypertext-anchors"], [96, "hypertext-anchors"], [97, "hypertext-anchors"], [98, "hypertext-anchors"], [99, "hypertext-anchors"], [100, "hypertext-anchors"], [101, "hypertext-anchors"], [102, "hypertext-anchors"], [103, "hypertext-anchors"], [104, "hypertext-anchors"], [105, "hypertext-anchors"], [106, "hypertext-anchors"], [107, "hypertext-anchors"], [108, "hypertext-anchors"]], "NXarpes": [[3, "nxarpes"]], "NXcanSAS": [[4, "nxcansas"]], "NXdirecttof": [[5, "nxdirecttof"]], "NXfluo": [[6, "nxfluo"]], "NXindirecttof": [[7, "nxindirecttof"]], "NXiqproc": [[8, "nxiqproc"]], "NXlauetof": [[9, "nxlauetof"]], "NXmonopd": [[10, "nxmonopd"]], "NXmx": [[11, "nxmx"]], "NXrefscan": [[12, "nxrefscan"]], "NXreftof": [[13, "nxreftof"]], "NXsas": [[14, "nxsas"]], "NXsastof": [[15, "nxsastof"]], "NXscan": [[16, "nxscan"]], "NXspe": [[17, "nxspe"]], "NXsqom": [[18, "nxsqom"]], "NXstxm": [[19, "nxstxm"]], "NXtas": [[20, "nxtas"]], "NXtofnpd": [[21, "nxtofnpd"]], "NXtofraw": [[22, "nxtofraw"]], "NXtofsingle": [[23, "nxtofsingle"]], "NXtomo": [[24, "nxtomo"]], "NXtomophase": [[25, "nxtomophase"]], "NXtomoproc": [[26, "nxtomoproc"]], "NXxas": [[27, "nxxas"]], "NXxasproc": [[28, "nxxasproc"]], "NXxbase": [[29, "nxxbase"]], "NXxeuler": [[30, "nxxeuler"]], "NXxkappa": [[31, "nxxkappa"]], "NXxlaue": [[32, "nxxlaue"]], "NXxlaueplate": [[33, "nxxlaueplate"]], "NXxnb": [[34, "nxxnb"]], "NXxrot": [[35, "nxxrot"]], "Application Definitions": [[36, "application-definitions"]], "NXaperture": [[37, "nxaperture"]], "NXattenuator": [[38, "nxattenuator"]], "NXbeam": [[39, "nxbeam"]], "NXbeam_stop": [[40, "nxbeam-stop"]], "NXbending_magnet": [[41, "nxbending-magnet"]], "NXcapillary": [[42, "nxcapillary"]], "NXcite": [[43, "nxcite"]], "NXcollection": [[44, "nxcollection"], [151, "nxcollection"]], "NXcollimator": [[45, "nxcollimator"]], "NXcrystal": [[46, "nxcrystal"]], "NXcylindrical_geometry": [[47, "nxcylindrical-geometry"], [116, "nxcylindrical-geometry"]], "NXdata": [[48, "nxdata"]], "NXdetector": [[49, "nxdetector"]], "NXdetector_group": [[50, "nxdetector-group"]], "NXdetector_module": [[51, "nxdetector-module"]], "NXdisk_chopper": [[52, "nxdisk-chopper"]], "NXentry": [[53, "nxentry"]], "NXenvironment": [[54, "nxenvironment"]], "NXevent_data": [[55, "nxevent-data"]], "NXfermi_chopper": [[56, "nxfermi-chopper"]], "NXfilter": [[57, "nxfilter"]], "NXflipper": [[58, "nxflipper"]], "NXfresnel_zone_plate": [[59, "nxfresnel-zone-plate"]], "NXgeometry": [[60, "nxgeometry"]], "NXgrating": [[61, "nxgrating"]], "NXguide": [[62, "nxguide"]], "NXinsertion_device": [[63, "nxinsertion-device"]], "NXinstrument": [[64, "nxinstrument"]], "NXlog": [[65, "nxlog"]], "NXmirror": [[66, "nxmirror"]], "NXmoderator": [[67, "nxmoderator"]], "NXmonitor": [[68, "nxmonitor"]], "NXmonochromator": [[69, "nxmonochromator"]], "NXnote": [[70, "nxnote"]], "NXobject": [[71, "nxobject"]], "NXoff_geometry": [[72, "nxoff-geometry"], [116, "nxoff-geometry"]], "NXorientation": [[73, "nxorientation"]], "NXparameters": [[74, "nxparameters"]], "NXpdb": [[75, "nxpdb"]], "NXpinhole": [[76, "nxpinhole"]], "NXpolarizer": [[77, "nxpolarizer"]], "NXpositioner": [[78, "nxpositioner"]], "NXprocess": [[79, "nxprocess"]], "NXreflections": [[80, "nxreflections"]], "NXroot": [[81, "nxroot"]], "NXsample": [[82, "nxsample"]], "NXsample_component": [[83, "nxsample-component"]], "NXsensor": [[84, "nxsensor"]], "NXshape": [[85, "nxshape"]], "NXslit": [[86, "nxslit"]], "NXsource": [[87, "nxsource"]], "NXsubentry": [[88, "nxsubentry"]], "NXtransformations": [[89, "nxtransformations"]], "NXtranslation": [[90, "nxtranslation"]], "NXuser": [[91, "nxuser"]], "NXvelocity_selector": [[92, "nxvelocity-selector"]], "NXxraylens": [[93, "nxxraylens"]], "Base Class Definitions": [[94, "base-class-definitions"]], "NXcontainer": [[95, "nxcontainer"]], "NXcsg": [[96, "nxcsg"]], "NXcxi_ptycho": [[97, "nxcxi-ptycho"]], "NXelectrostatic_kicker": [[98, "nxelectrostatic-kicker"]], "NXmagnetic_kicker": [[99, "nxmagnetic-kicker"]], "NXquadric": [[100, "nxquadric"]], "NXquadrupole_magnet": [[101, "nxquadrupole-magnet"]], "NXseparator": [[102, "nxseparator"]], "NXsnsevent": [[103, "nxsnsevent"]], "NXsnshisto": [[104, "nxsnshisto"]], "NXsolenoid_magnet": [[105, "nxsolenoid-magnet"]], "NXsolid_geometry": [[106, "nxsolid-geometry"]], "NXspecdata": [[107, "nxspecdata"]], "NXspin_rotator": [[108, "nxspin-rotator"]], "Contributed Definitions": [[109, "contributed-definitions"], [112, "contributed-definitions"]], "NeXus Class Definitions": [[110, "nexus-class-definitions"]], "Colophon": [[111, "colophon"]], "NeXus Community": [[112, "nexus-community"]], "NeXus Webpage": [[112, "nexus-webpage"]], "Other Ways NeXus Coordinates with the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional Data with Axis Data": [[114, "associating-multi-dimensional-data-with-axis-data"]], "Associating plottable data using attributes applied to the NXdata group": [[114, "associating-plottable-data-using-attributes-applied-to-the-nxdata-group"]], "Examples": [[114, "examples"]], "Associating plottable data by name using the axes attribute": [[114, "associating-plottable-data-by-name-using-the-axes-attribute"]], "Associating plottable data by dimension number using the axis attribute": [[114, "associating-plottable-data-by-dimension-number-using-the-axis-attribute"]], "Introduction to NeXus definitions": [[115, "introduction-to-nexus-definitions"]], "Overview of NeXus definitions": [[115, "overview-of-nexus-definitions"]], "Description": [[115, "description"], [115, "id1"]], "Symbols table": [[115, "symbols-table"]], "Annotated Structure": [[115, "annotated-structure"]], "Names (groups, fields, links, and attributes)": [[115, "names-groups-fields-links-and-attributes"]], "NeXus data type": [[115, "nexus-data-type"]], "Units": [[115, "units"]], "Choice": [[115, "choice"]], "NeXus Design": [[116, "nexus-design"]], "NeXus Objects and Terms": [[116, "nexus-objects-and-terms"]], "Groups": [[116, "groups"]], "Fields": [[116, "fields"]], "Attributes": [[116, "attributes"]], "File attributes": [[116, "file-attributes"]], "Links": [[116, "links"]], "Python h5py code to make NeXus links": [[116, "index-13"]], "External File Links": [[116, "external-file-links"]], "Combining NeXus links and External File Links": [[116, "combining-nexus-links-and-external-file-links"]], "NeXus Base Classes": [[116, "nexus-base-classes"]], "NXdata Facilitates Automatic Plotting": [[116, "nxdata-facilitates-automatic-plotting"]], "Where to Store Metadata": [[116, "where-to-store-metadata"]], "NeXus Application Definitions": [[116, "nexus-application-definitions"]], "NeXus Geometry": [[116, "nexus-geometry"]], "The NeXus Coordinate System": [[116, "the-nexus-coordinate-system"]], "Coordinate Transformations": [[116, "coordinate-transformations"]], "Coordinate Transformation Field And Attributes": [[116, "coordinate-transformation-field-and-attributes"]], "Shape Descriptions": [[116, "shape-descriptions"]], "Detector Shape Descriptions": [[116, "detector-shape-descriptions"]], "Legacy Geometry Descriptions": [[116, "legacy-geometry-descriptions"]], "McStas and NXgeometry System": [[116, "mcstas-and-nxgeometry-system"]], "Simple (Spherical Polar) Coordinate System": [[116, "simple-spherical-polar-coordinate-system"]], "Rules and Underlying File Formats": [[116, "rules-and-underlying-file-formats"]], "About these docs": [[117, "about-these-docs"]], "Example NeXus programs using NAPI": [[118, "example-nexus-programs-using-napi"]], "NAPI Simple 2-D Write Example (C, F77, F90)": [[118, "napi-simple-2-d-write-example-c-f77-f90"]], "NAPI C Example: write simple NeXus file": [[118, "napi-c-example-write-simple-nexus-file"]], "NAPI F77 Example: write simple NeXus file": [[118, "napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, "writing-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "Reading a simple NeXus file using native HDF5 commands in C": [[119, "reading-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "EPICS Area Detector Examples": [[120, "epics-area-detector-examples"]], "HDF5 File Writing Plugin": [[120, "hdf5-file-writing-plugin"]], "configuration files": [[120, "configuration-files"]], "attributes.xml": [[120, "attributes-xml"]], "layout.xml": [[120, "layout-xml"]], "additional configuration": [[120, "additional-configuration"]], "Example view": [[120, "example-view"]], "Python code to store an image in a NeXus file": [[120, "python-code-to-store-an-image-in-a-nexus-file"]], "using the h5py package": [[120, "using-the-h5py-package"]], "using the nexusformat package": [[120, "using-the-nexusformat-package"]], "Visualization": [[120, "visualization"]], "Downloads": [[120, "downloads"], [126, "downloads"]], "Footnotes": [[120, "footnotes"]], "Python Examples using h5py": [[121, "python-examples-using-h5py"]], "Writing the simplest data using h5py": [[121, "writing-the-simplest-data-using-h5py"]], "Complete h5py example writing and reading a NeXus data file": [[121, "complete-h5py-example-writing-and-reading-a-nexus-data-file"]], "Writing the HDF5 file using h5py": [[121, "writing-the-hdf5-file-using-h5py"]], "Reading the HDF5 file using h5py": [[121, "reading-the-hdf5-file-using-h5py"]], "Finding the default plottable data": [[121, "finding-the-default-plottable-data"]], "Plotting the HDF5 file": [[121, "plotting-the-hdf5-file"]], "Links to Data in External HDF5 Files": [[121, "links-to-data-in-external-hdf5-files"]], "file: external_angles.hdf5": [[121, "file-external-angles-hdf5"]], "file: external_counts.hdf5": [[121, "file-external-counts-hdf5"]], "file: external_master.hdf5": [[121, "file-external-master-hdf5"]], "source code: externalExample.py": [[121, "source-code-externalexample-py"]], "downloads": [[121, "downloads"], [122, "downloads"], [123, "downloads"]], "h5py example writing the simplest NeXus data file": [[122, "h5py-example-writing-the-simplest-nexus-data-file"]], "h5py example writing a simple NeXus data file with links": [[123, "h5py-example-writing-a-simple-nexus-data-file-with-links"]], "Examples of writing and reading NeXus data files": [[124, "examples-of-writing-and-reading-nexus-data-files"]], "Code Examples in Various Languages": [[124, "code-examples-in-various-languages"]], "Code Examples that use the NeXus API (NAPI)": [[124, "code-examples-that-use-the-nexus-api-napi"]], "Code that reads NeXus data files": [[124, "code-that-reads-nexus-data-files"]], "Viewing 2-D Data from LRMECS": [[125, "viewing-2-d-data-from-lrmecs"]], "Visualize Using h5dump": [[125, "visualize-using-h5dump"]], "LRMECS lrcs3701 data: h5dump output": [[125, "lrmecs-lrcs3701-data-h5dump-output"]], "Visualize Using HDFview": [[125, "visualize-using-hdfview"]], "LRMECS lrcs3701 data: image": [[125, "lrmecs-lrcs3701-data-image"], [125, "id3"]], "Visualize Using IgorPro": [[125, "visualize-using-igorpro"]], "MATLAB Examples": [[126, "matlab-examples"]], "input.dat": [[126, "input-dat"]], "writing data": [[126, "writing-data"]], "reading data": [[126, "reading-data"]], "writing data file with links": [[126, "writing-data-file-with-links"]], "Frequently Asked Questions": [[127, "frequently-asked-questions"]], "Physical File format": [[128, "physical-file-format"]], "Choice of HDF as Underlying File Format": [[128, "choice-of-hdf-as-underlying-file-format"]], "Mapping NeXus into HDF": [[128, "mapping-nexus-into-hdf"]], "NeXus Repositories": [[129, "nexus-repositories"]], "Brief history of NeXus": [[130, "brief-history-of-nexus"]], "User Manual and Reference Documentation": [[131, "user-manual-and-reference-documentation"]], "Installation": [[132, "installation"], [143, "installation"]], "Precompiled Binary Installation": [[132, "precompiled-binary-installation"]], "Linux RPM Distribution Kits": [[132, "linux-rpm-distribution-kits"]], "Microsoft Windows Installation Kit": [[132, "microsoft-windows-installation-kit"]], "Mac OS X Installation Kit": [[132, "mac-os-x-installation-kit"]], "Source Installation": [[132, "source-installation"]], "NeXus Source Code Distribution": [[132, "nexus-source-code-distribution"]], "Releases": [[132, "releases"]], "NeXus definitions": [[132, "nexus-definitions"]], "Release Notes": [[132, "release-notes"]], "Release Process": [[132, "release-process"]], "Versioning (Tags)": [[132, "versioning-tags"]], "NeXus Introduction": [[133, "nexus-introduction"]], "What is NeXus?": [[133, "what-is-nexus"]], "A Set of Design Principles": [[133, "a-set-of-design-principles"]], "Example of a NeXus File": [[133, "example-of-a-nexus-file"]], "Important Classes": [[133, "important-classes"]], "Simple Example": [[133, "simple-example"]], "A Set of Data Storage Objects": [[133, "a-set-of-data-storage-objects"]], "A Set of Subroutines": [[133, "a-set-of-subroutines"]], "Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, "napi-fortran-77-interface"]], "NAPI Fortran 90 Interface": [[141, "napi-fortran-90-interface"]], "NAPI IDL Interface": [[142, "napi-idl-interface"]], "NAPI Java Interface": [[143, "napi-java-interface"]], "Acknowledgement": [[143, "acknowledgement"]], "Requirements": [[143, "requirements"]], "Installation under Windows": [[143, "installation-under-windows"]], "Installation under Unix": [[143, "installation-under-unix"]], "Running Programs with the NeXus API for Java": [[143, "running-programs-with-the-nexus-api-for-java"]], "Locating the shared libraries": [[143, "locating-the-shared-libraries"]], "Locating jnexus.jar": [[143, "locating-jnexus-jar"]], "Programming with the NeXus API for Java": [[143, "programming-with-the-nexus-api-for-java"]], "Data Writing and Reading": [[143, "data-writing-and-reading"]], "Inquiry Routines": [[143, "inquiry-routines"]], "Known Problems": [[143, "known-problems"]], "On-line Documentation": [[143, "on-line-documentation"]], "NIAC: The NeXus 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