From 847b38a85eb6ab8444906d43d05e3cf8063f03b8 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 12:29:33 +0200 Subject: [PATCH 01/39] updated text fields --- nexus_constructor/model/transformation.py | 4 ++++ nexus_constructor/transformation_view.py | 14 ++++++++------ 2 files changed, 12 insertions(+), 6 deletions(-) diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 1be0047b5..71fbfd27c 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -107,6 +107,10 @@ def qmatrix(self) -> QMatrix4x4: if not offset: offset = 0.0 if self.transform_type == TransformationType.ROTATION: + # noramlise offset to get axis, then apply a rotation offset first to translate it, and then apply rotation + # try setTranslation (to modify ({}.4)) + # ORRRR + # self.vector + offset quaternion = transform.fromAxisAndAngle( self.vector, (self.ui_value + offset) * self._ui_scale_factor ) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 491be0514..7bb4147f2 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -129,9 +129,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( METRES ) - self.transformation_frame.vector_label.setText("Direction") - self.transformation_frame.value_label.setText("Distance (m)") - self.transformation_frame.offset_label.setText("Offset (m)") + transformation_text(self) self.setTitle(TransformationType.TRANSLATION) @@ -141,12 +139,16 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( RADIANS ) - self.transformation_frame.vector_label.setText("Rotation Axis") - self.transformation_frame.value_label.setText("Angle (°)") - self.transformation_frame.offset_label.setText("Offset (°)") + transformation_text(self) self.setTitle(TransformationType.ROTATION) +def transformation_text(self): + self.transformation_frame.vector_label.setText("Direction") + self.transformation_frame.value_label.setText("Distance (m)") + self.transformation_frame.offset_label.setText("Offset (m)") + + def links_back_to_component(reference: Component, comparison: Component): if reference == comparison: return True From c6c4645fc6c6492ec4524842145daf276b30b9dd Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 12:33:06 +0200 Subject: [PATCH 02/39] updated text --- nexus_constructor/transformation_view.py | 15 +++++++-------- 1 file changed, 7 insertions(+), 8 deletions(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 7bb4147f2..1ff62b8cf 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -129,8 +129,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( METRES ) - transformation_text(self) - self.setTitle(TransformationType.TRANSLATION) + transformation_text(self, TransformationType.TRANSLATION) class EditRotation(EditTransformation): @@ -139,14 +138,14 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( RADIANS ) - transformation_text(self) - self.setTitle(TransformationType.ROTATION) + transformation_text(self, TransformationType.ROTATION) -def transformation_text(self): - self.transformation_frame.vector_label.setText("Direction") - self.transformation_frame.value_label.setText("Distance (m)") - self.transformation_frame.offset_label.setText("Offset (m)") +def transformation_text(self, transformation_type): + self.transformation_frame.vector_label.setText("Vector") + self.transformation_frame.value_label.setText("Magnitude") + self.transformation_frame.offset_label.setText("Offset") + self.setTitle(transformation_type) def links_back_to_component(reference: Component, comparison: Component): From d07ed1f2541847331e208f10d49c50c0665b80a9 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 18:29:34 +0200 Subject: [PATCH 03/39] vector for offset --- nexus_constructor/field_widget.py | 17 +++++------------ ui/transformation.py | 23 ++++++++++++++++------- 2 files changed, 21 insertions(+), 19 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index 0eda46af7..ec6740a99 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -123,7 +123,7 @@ def __init__( self.unit_validator = UnitValidator() self.units_line_edit.setValidator(self.unit_validator) self.units_line_edit.setMinimumWidth(20) - self.units_line_edit.setMaximumWidth(50) + # self.units_line_edit.setMaximumWidth(50) unit_size_policy = QSizePolicy() unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) unit_size_policy.setHorizontalStretch(1) @@ -133,6 +133,8 @@ def __init__( partial(validate_line_edit, self.units_line_edit) ) self.units_line_edit.setPlaceholderText(CommonAttrs.UNITS) + fix_horizontal_size = QSizePolicy() + fix_horizontal_size.setHorizontalPolicy(QSizePolicy.Fixed) self.field_type_combo: QComboBox = QComboBox() self.field_type_combo.addItems([item.value for item in FieldType]) @@ -140,9 +142,6 @@ def __init__( self.field_type_combo.currentTextChanged.connect( self._open_edit_dialog_if_stream ) - - fix_horizontal_size = QSizePolicy() - fix_horizontal_size.setHorizontalPolicy(QSizePolicy.Fixed) self.field_type_combo.setSizePolicy(fix_horizontal_size) self.value_type_combo: QComboBox = QComboBox() @@ -179,14 +178,8 @@ def __init__( self.attrs_button.clicked.connect(self.show_attrs_dialog) self.layout = QHBoxLayout() - self.layout.addWidget(self.field_name_edit) - self.layout.addWidget(self.field_type_combo) - self.layout.addWidget(self.value_line_edit) - self.layout.addWidget(self.nx_class_combo) - self.layout.addWidget(self.edit_button) - self.layout.addWidget(self.value_type_combo) - self.layout.addWidget(self.units_line_edit) - self.layout.addWidget(self.attrs_button) + for widget in [self.field_name_edit, self.field_type_combo, self.value_line_edit, self.nx_class_combo, self.edit_button, self.value_type_combo, self.units_line_edit, self.attrs_button]: + self.layout.addWidget(widget) self.layout.setAlignment(Qt.AlignLeft) self.setLayout(self.layout) diff --git a/ui/transformation.py b/ui/transformation.py index ce0b37b4e..f03b77687 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -49,22 +49,25 @@ def setup_ui(self, transformation): hide_name_field=True, show_only_f142_stream=True, ) + self.magnitude_widget.field_type_combo.setMaximumWidth(0) + self.magnitude_widget.value_type_combo.setMaximumWidth(0) + self.magnitude_widget.attrs_button.setMaximumWidth(0) self.magnitude_widget.setFrameShape(QFrame.NoFrame) self.magnitude_widget.setMinimumHeight(40) self.ui_placeholder_layout = QVBoxLayout() - self.offset_box = QDoubleSpinBox(transformation) - self.offset_box.setToolTip("Offset to the transformation.") - self.offset_box.setMinimumWidth(100) - self.offset_box.setMinimum(-1000) - self.offset_box.setDecimals(5) + # self.offset_box = QDoubleSpinBox(transformation) + # self.offset_box.setToolTip("Offset to the transformation.") + # self.offset_box.setMinimumWidth(100) + # self.offset_box.setMinimum(-1000) + # self.offset_box.setDecimals(5) offset_font = QFont() offset_font.setBold(True) self.offset_label = QLabel("Offset") self.offset_label.setFont(offset_font) - self.ui_placeholder_layout.addWidget(self.offset_label) - self.ui_placeholder_layout.addWidget(self.offset_box) + # self.ui_placeholder_layout.addWidget(self.offset_label) + # self.ui_placeholder_layout.addWidget(self.offset_box) self.depends_on_text_box = QLineEdit(transformation) self.depends_on_text_box.setToolTip("depends_on for transformation.") @@ -79,6 +82,7 @@ def setup_ui(self, transformation): self.setup_name_layout() self.setup_vector_layout(transformation) + self.setup_offset_layout(transformation) self.setup_value_and_magnitude() self.set_spinbox_ranges() @@ -97,6 +101,11 @@ def setup_vector_layout(self, transformation): self._set_up_vector_box(transformation) self._add_line() + def setup_offset_layout(self, transformation): + self.main_layout.addWidget(self.offset_label) + self._set_up_vector_box(transformation) + self._add_line() + def setup_name_layout(self): self.name_layout.addWidget(self.name_label) self.name_layout.addWidget(self.name_line_edit) From 778ca0291a77211e1a0dc84141d5ca87e65372ee Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 18:29:50 +0200 Subject: [PATCH 04/39] working vector for offset --- ui/transformation.py | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/ui/transformation.py b/ui/transformation.py index f03b77687..a9c74247b 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -113,24 +113,24 @@ def setup_name_layout(self): self._add_line() def _set_up_vector_box(self, transformation): - self.xyz_layout = QHBoxLayout() + self.xyz_layout_offset = QHBoxLayout() - self.x_layout = QFormLayout() - self.x_spinbox = QDoubleSpinBox(transformation) - self.x_layout.addRow("x:", self.x_spinbox) - self.xyz_layout.addLayout(self.x_layout) + self.x_layout_offset = QFormLayout() + self.x_spinbox_offset = QDoubleSpinBox(transformation) + self.x_layout_offset.addRow("x:", self.x_spinbox_offset) + self.xyz_layout_offset.addLayout(self.x_layout_offset) - self.y_layout = QFormLayout() - self.y_spinbox = QDoubleSpinBox(transformation) - self.y_layout.addRow("y:", self.y_spinbox) - self.xyz_layout.addLayout(self.y_layout) + self.y_layout_offset = QFormLayout() + self.y_spinbox_offset = QDoubleSpinBox(transformation) + self.y_layout_offset.addRow("y:", self.y_spinbox_offset) + self.xyz_layout_offset.addLayout(self.y_layout_offset) - self.z_layout = QFormLayout() - self.z_spinbox = QDoubleSpinBox(transformation) - self.z_layout.addRow("z:", self.z_spinbox) - self.xyz_layout.addLayout(self.z_layout) + self.z_layout_offset = QFormLayout() + self.z_spinbox_offset = QDoubleSpinBox(transformation) + self.z_layout_offset.addRow("z:", self.z_spinbox_offset) + self.xyz_layout_offset.addLayout(self.z_layout_offset) - self.main_layout.addLayout(self.xyz_layout) + self.main_layout.addLayout(self.xyz_layout_offset) def _add_line(self): line = QFrame() From 3bd3b61b7762e4e356d37f3a695f14cf646dc178 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 18:41:47 +0200 Subject: [PATCH 05/39] magic missing widgets --- nexus_constructor/transformation_view.py | 6 ++++-- ui/transformation.py | 22 +++++++++++++++++++++- 2 files changed, 25 insertions(+), 3 deletions(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 1ff62b8cf..907194638 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -62,7 +62,9 @@ def _fill_in_existing_fields(self, current_vector): self.transformation_frame.magnitude_widget.units = self.transformation.units offset = self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) if offset: - self.transformation_frame.offset_box.setValue(offset) + self.transformation_frame.x_spinbox_offset.setValue(offset[0]) + self.transformation_frame.x_spinbox_offset.setValue(offset[1]) + self.transformation_frame.x_spinbox_offset.setValue(offset[2]) self.update_depends_on_ui() def disable(self): @@ -94,7 +96,7 @@ def update_depends_on_ui(self): self.transformation_frame.depends_on_text_box.setText(".") def save_magnitude(self): - self.transformation.values = self.transformation_frame.magnitude_widget.value +5 self.transformation.values = self.transformation_frame.magnitude_widget.value self.transformation.units = self.transformation_frame.magnitude_widget.units self.model.signals.transformation_changed.emit() diff --git a/ui/transformation.py b/ui/transformation.py index a9c74247b..5f49f7685 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -103,7 +103,7 @@ def setup_vector_layout(self, transformation): def setup_offset_layout(self, transformation): self.main_layout.addWidget(self.offset_label) - self._set_up_vector_box(transformation) + self._set_up_vector_box_offset(transformation) self._add_line() def setup_name_layout(self): @@ -113,6 +113,26 @@ def setup_name_layout(self): self._add_line() def _set_up_vector_box(self, transformation): + self.xyz_layout = QHBoxLayout() + + self.x_layout = QFormLayout() + self.x_spinbox = QDoubleSpinBox(transformation) + self.x_layout.addRow("x:", self.x_spinbox) + self.xyz_layout.addLayout(self.x_layout) + + self.y_layout = QFormLayout() + self.y_spinbox = QDoubleSpinBox(transformation) + self.y_layout.addRow("y:", self.y_spinbox) + self.xyz_layout.addLayout(self.y_layout) + + self.z_layout = QFormLayout() + self.z_spinbox = QDoubleSpinBox(transformation) + self.z_layout.addRow("z:", self.z_spinbox) + self.xyz_layout.addLayout(self.z_layout) + + self.main_layout.addLayout(self.xyz_layout) + + def _set_up_vector_box_offset(self, transformation): self.xyz_layout_offset = QHBoxLayout() self.x_layout_offset = QFormLayout() From 54a6636e0dc80effa772960c2d35bf1f963a3b95 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 9 Oct 2023 18:42:04 +0200 Subject: [PATCH 06/39] fixed typo --- nexus_constructor/transformation_view.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 907194638..866bd6a27 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -96,7 +96,7 @@ def update_depends_on_ui(self): self.transformation_frame.depends_on_text_box.setText(".") def save_magnitude(self): -5 self.transformation.values = self.transformation_frame.magnitude_widget.value + self.transformation.values = self.transformation_frame.magnitude_widget.value self.transformation.units = self.transformation_frame.magnitude_widget.units self.model.signals.transformation_changed.emit() From d8f5f3f6966bb2f40e18f2f5b4f5a9fd47f97936 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 10 Oct 2023 15:09:53 +0200 Subject: [PATCH 07/39] no crashes stash --- nexus_constructor/transformation_view.py | 9 +++++---- ui/transformation.py | 9 +++++++-- 2 files changed, 12 insertions(+), 6 deletions(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 866bd6a27..f3e19724f 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -60,11 +60,11 @@ def _fill_in_existing_fields(self, current_vector): self.transformation.values, self.transformation_frame.magnitude_widget ) self.transformation_frame.magnitude_widget.units = self.transformation.units - offset = self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) + offset = QVector3D() #self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) if offset: self.transformation_frame.x_spinbox_offset.setValue(offset[0]) - self.transformation_frame.x_spinbox_offset.setValue(offset[1]) - self.transformation_frame.x_spinbox_offset.setValue(offset[2]) + self.transformation_frame.y_spinbox_offset.setValue(offset[1]) + self.transformation_frame.z_spinbox_offset.setValue(offset[2]) self.update_depends_on_ui() def disable(self): @@ -112,7 +112,8 @@ def save_transformation_name(self): self.model.signals.transformation_changed.emit() def save_offset(self): - offset_value = self.transformation_frame.offset_box.value() + + offset_value = self.transformation_frame.x_spinbox_offset.value() if offset_value is not None: self.transformation.attributes.set_attribute_value( CommonAttrs.OFFSET, offset_value diff --git a/ui/transformation.py b/ui/transformation.py index 5f49f7685..12eaeeb97 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -162,9 +162,14 @@ def set_spinbox_ranges(self): self.spinboxes = [ self.x_spinbox, self.y_spinbox, - self.z_spinbox, + self.z_spinbox ] - for spinbox in self.spinboxes: + self.offset_spinboxes = [ + self.x_spinbox_offset, + self.y_spinbox_offset, + self.z_spinbox_offset, + ] + for spinbox in self.spinboxes + self.offset_spinboxes: spinbox.setRange(-10000000, 10000000) spinbox.setDecimals(5) From 95bfcb5d61eb72e355ab82cd5e192d6cb13420f0 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Thu, 12 Oct 2023 11:12:20 +0200 Subject: [PATCH 08/39] latest changes stash --- nexus_constructor/transformation_view.py | 2 +- ui/transformation.py | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index f3e19724f..56954494b 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -122,7 +122,7 @@ def save_offset(self): def save_all_changes(self): self.save_transformation_name() self.save_transformation_vector() - self.save_offset() +# self.save_offset() self.save_magnitude() diff --git a/ui/transformation.py b/ui/transformation.py index 12eaeeb97..1f7ba2db9 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -49,9 +49,9 @@ def setup_ui(self, transformation): hide_name_field=True, show_only_f142_stream=True, ) - self.magnitude_widget.field_type_combo.setMaximumWidth(0) - self.magnitude_widget.value_type_combo.setMaximumWidth(0) - self.magnitude_widget.attrs_button.setMaximumWidth(0) + # self.magnitude_widget.field_type_combo.setMaximumWidth(0) + # self.magnitude_widget.value_type_combo.setMaximumWidth(0) + # self.magnitude_widget.attrs_button.setMaximumWidth(0) self.magnitude_widget.setFrameShape(QFrame.NoFrame) self.magnitude_widget.setMinimumHeight(40) From 56691afb79b1db25cd175a695148888b63315add Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Thu, 12 Oct 2023 18:33:07 +0200 Subject: [PATCH 09/39] fixed translation issue --- nexus_constructor/model/component.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index c4e939b04..01bcf0737 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -87,7 +87,7 @@ class Component(Group): _depends_on: Transformation = attr.ib(default=None) has_link: bool = attr.ib(default=None) component_info: Optional["ComponentInfo"] = None - stored_transforms: list = [] + stored_transforms: Optional[list] = None name: str = "" parent_node: Optional[Group] = None From de340109bb798c90cc83ae854ba78dfe4c59eb6e Mon Sep 17 00:00:00 2001 From: cow-bot Date: Thu, 12 Oct 2023 16:46:19 +0000 Subject: [PATCH 10/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 789e51f66..5eca86784 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Sep 21, 2023.

+

This manual built Oct 12, 2023.

See also

This document is available in these formats online:

diff --git a/nx-class-documentation/html/searchindex.js b/nx-class-documentation/html/searchindex.js index f9a460b1e..b9bd229a7 100644 --- a/nx-class-documentation/html/searchindex.js +++ b/nx-class-documentation/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["applying-nexus", "authorgroup", "classes/applications/NXarchive", "classes/applications/NXarpes", "classes/applications/NXcanSAS", "classes/applications/NXdirecttof", "classes/applications/NXfluo", "classes/applications/NXindirecttof", "classes/applications/NXiqproc", "classes/applications/NXlauetof", "classes/applications/NXmonopd", "classes/applications/NXmx", "classes/applications/NXrefscan", "classes/applications/NXreftof", "classes/applications/NXsas", "classes/applications/NXsastof", "classes/applications/NXscan", "classes/applications/NXspe", "classes/applications/NXsqom", "classes/applications/NXstxm", "classes/applications/NXtas", "classes/applications/NXtofnpd", "classes/applications/NXtofraw", 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112, 114, 122, 123, 126, 127, 144, 154], "sake": 0, "simplic": [0, 121], "bear": 0, "strong": [0, 80], "resembl": 0, "simpl": [0, 46, 57, 76, 79, 80, 82, 86, 94, 114, 115, 121, 122, 124, 125, 126, 127, 128, 134, 138, 145, 147, 148, 152, 154], "powder": [0, 10, 21, 22, 23, 36, 82, 116, 151], "diffractomet": [0, 9, 10, 21, 30, 31, 34, 36, 64, 82, 89, 107, 116, 151], "let": [0, 9, 29, 52, 120, 121, 143, 151, 152], "": [0, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 34, 35, 36, 48, 49, 57, 62, 82, 84, 87, 95, 107, 110, 114, 116, 119, 120, 121, 126, 127, 130, 132, 143, 146, 147, 148, 151], "pretend": 0, "cannot": [0, 4, 110, 114, 118, 143, 146, 147, 151], "ani": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 36, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 52, 53, 57, 58, 59, 61, 62, 63, 66, 67, 68, 70, 72, 81, 82, 83, 84, 85, 87, 88, 89, 93, 94, 95, 96, 97, 100, 107, 109, 111, 114, 116, 120, 125, 127, 129, 133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], 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48, 49, 57, 65, 69, 80, 82, 83, 95, 96, 110, 112, 114, 115, 116, 118, 121, 127, 130, 132, 133, 134, 138, 143, 145, 147, 151, 152], "store": [4, 11, 16, 18, 19, 25, 36, 39, 48, 49, 55, 65, 70, 73, 82, 94, 107, 118, 119, 121, 122, 123, 125, 126, 127, 128, 130, 131, 133, 134, 137, 141, 142, 143, 145, 147, 148, 151, 153], "reduc": [4, 8, 14, 18, 19, 36, 38, 49, 57, 82, 94, 110, 120, 138, 143, 145, 151], "small": [4, 14, 36, 53, 88, 116, 123, 127, 133, 144, 145, 147, 148], "scatter": [4, 14, 34, 36, 38, 39, 46, 48, 82, 83, 90, 95, 116, 127, 130, 133, 136, 137, 145, 146, 147, 154], "cansas1d": 4, "1": [4, 9, 11, 20, 23, 24, 27, 28, 29, 32, 46, 48, 49, 50, 53, 57, 62, 68, 70, 75, 79, 80, 82, 83, 84, 87, 89, 95, 97, 103, 104, 107, 109, 110, 113, 115, 116, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 132, 133, 134, 141, 143, 144, 145, 146, 147, 148, 151, 152, 154, 155], "io": [4, 114, 118, 120, 121, 122, 154, 155], "cansas2012": 4, "nxcansas_exampl": 4, "minimum": [4, 19, 36, 65, 78, 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107, 115, 116, 120, 137, 145, 147, 151], "ambigu": [4, 53, 81, 88, 107, 114, 116, 146, 147], "than": [4, 11, 19, 46, 48, 49, 52, 53, 57, 60, 65, 75, 80, 81, 88, 89, 91, 97, 107, 110, 114, 115, 116, 120, 121, 123, 127, 128, 132, 137, 145, 146, 147, 148, 151, 154, 155], "represent": [4, 11, 16, 47, 114, 115, 116, 125, 133, 137, 146, 147, 151], "Such": [4, 11, 19, 48, 53, 88, 89, 107, 110, 114, 115, 116, 120, 151], "subentri": [4, 53, 88, 107], "recogn": [4, 46, 57, 82, 83, 88, 95, 114, 121, 123, 137], "could": [4, 11, 39, 48, 49, 50, 54, 61, 82, 94, 114, 115, 121, 133, 145, 146, 147, 152], "els": [4, 29, 49, 73, 90, 116, 121, 125], "repres": [4, 11, 16, 29, 49, 50, 53, 64, 75, 88, 115, 116, 121, 125, 127, 130, 133, 136, 137, 143, 147, 148, 151], "identif": [4, 54, 64, 84, 91], "en": [4, 18, 20, 107, 114, 118, 121, 122, 145, 147], "entiti": [4, 133, 134, 138, 147], "associ": [4, 11, 48, 53, 68, 82, 107, 116, 118, 119, 120, 122, 130, 132, 133, 136, 145, 147, 151], "correl": [4, 65, 80], "vector": [4, 11, 39, 46, 51, 73, 84, 85, 89, 97, 116, 147], "magnitud": 4, "sasdata01": 4, "sure": [4, 89, 120, 125], "sever": [4, 11, 29, 49, 62, 112, 114, 116, 120, 130, 133, 137, 147, 151, 154], "mask_indic": 4, "indic": [4, 11, 17, 24, 26, 46, 47, 48, 49, 50, 51, 53, 62, 72, 80, 82, 97, 107, 114, 115, 116, 119, 126, 128, 141, 146, 147, 148], "relationship": [4, 48, 114, 127], "vari": [4, 8, 11, 16, 49, 51, 82, 85, 114, 137, 151], "paramet": [4, 8, 18, 26, 28, 46, 53, 54, 57, 59, 63, 74, 82, 83, 85, 88, 94, 100, 103, 104, 107, 116, 118, 120, 133, 138, 141, 147], "temperature_indic": [4, 48, 114, 151], "pressure_indic": [4, 48, 114], "arrai": [4, 11, 13, 16, 19, 26, 30, 31, 34, 35, 39, 41, 46, 48, 49, 50, 51, 55, 61, 65, 66, 68, 75, 80, 82, 83, 85, 97, 107, 115, 116, 118, 120, 133, 134, 137, 141, 143, 145, 146, 147, 148, 151, 152, 154], "independ": [4, 11, 48, 107, 114, 147, 154], "everi": [4, 48, 52, 55, 65, 72, 114, 127, 130, 133, 144, 147, 152, 154], "five": [4, 55, 65], "list": 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[4, 11], "where": [4, 9, 11, 14, 15, 30, 35, 46, 48, 49, 52, 55, 57, 62, 68, 73, 80, 81, 82, 83, 84, 89, 90, 95, 107, 114, 115, 120, 121, 123, 127, 130, 133, 137, 143, 146, 147, 148, 151, 152, 154], "fals": [4, 11, 48, 49, 146, 147], "true": [4, 11, 48, 49, 97, 120, 146, 147], "timestamp": [4, 52, 55, 65, 120, 121, 126], "iso": [4, 11, 114, 121], "8601": [4, 11, 114, 121], "accompani": [4, 114], "geometri": [4, 5, 7, 11, 14, 15, 31, 36, 37, 38, 40, 41, 45, 46, 47, 49, 51, 52, 56, 57, 60, 62, 63, 66, 67, 68, 69, 72, 73, 76, 82, 84, 86, 87, 89, 90, 92, 93, 94, 96, 97, 106, 107, 109], "pi": 4, "sin": 4, "warn": [4, 44, 110, 114, 119, 147, 151], "valid": [4, 11, 44, 49, 64, 75, 81, 94, 95, 104, 110, 114, 115, 116, 118, 119, 121, 127, 130, 131, 133, 138, 145, 146, 147, 153], "m": [4, 11, 57, 62, 66, 80, 107, 114, 116, 126, 127, 134, 146], "nm": [4, 87, 146], "prefer": [4, 47, 48, 53, 107, 114, 116, 127, 146, 151], "angstrom": [4, 69, 146], "uncertainti": [4, 48, 49, 65, 116], "flexibl": [4, 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112, 114, 122, 123, 126, 127, 144, 154], "sake": 0, "simplic": [0, 121], "bear": 0, "strong": [0, 80], "resembl": 0, "simpl": [0, 46, 57, 76, 79, 80, 82, 86, 94, 114, 115, 121, 122, 124, 125, 126, 127, 128, 134, 138, 145, 147, 148, 152, 154], "powder": [0, 10, 21, 22, 23, 36, 82, 116, 151], "diffractomet": [0, 9, 10, 21, 30, 31, 34, 36, 64, 82, 89, 107, 116, 151], "let": [0, 9, 29, 52, 120, 121, 143, 151, 152], "": [0, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 34, 35, 36, 48, 49, 57, 62, 82, 84, 87, 95, 107, 110, 114, 116, 119, 120, 121, 126, 127, 130, 132, 143, 146, 147, 148, 151], "pretend": 0, "cannot": [0, 4, 110, 114, 118, 143, 146, 147, 151], "ani": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 36, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 52, 53, 57, 58, 59, 61, 62, 63, 66, 67, 68, 70, 72, 81, 82, 83, 84, 85, 87, 88, 89, 93, 94, 95, 96, 97, 100, 107, 109, 111, 114, 116, 120, 125, 127, 129, 133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], 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48, 49, 57, 65, 69, 80, 82, 83, 95, 96, 110, 112, 114, 115, 116, 118, 121, 127, 130, 132, 133, 134, 138, 143, 145, 147, 151, 152], "store": [4, 11, 16, 18, 19, 25, 36, 39, 48, 49, 55, 65, 70, 73, 82, 94, 107, 118, 119, 121, 122, 123, 125, 126, 127, 128, 130, 131, 133, 134, 137, 141, 142, 143, 145, 147, 148, 151, 153], "reduc": [4, 8, 14, 18, 19, 36, 38, 49, 57, 82, 94, 110, 120, 138, 143, 145, 151], "small": [4, 14, 36, 53, 88, 116, 123, 127, 133, 144, 145, 147, 148], "scatter": [4, 14, 34, 36, 38, 39, 46, 48, 82, 83, 90, 95, 116, 127, 130, 133, 136, 137, 145, 146, 147, 154], "cansas1d": 4, "1": [4, 9, 11, 20, 23, 24, 27, 28, 29, 32, 46, 48, 49, 50, 53, 57, 62, 68, 70, 75, 79, 80, 82, 83, 84, 87, 89, 95, 97, 103, 104, 107, 109, 110, 113, 115, 116, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 132, 133, 134, 141, 143, 144, 145, 146, 147, 148, 151, 152, 154, 155], "io": [4, 114, 118, 120, 121, 122, 154, 155], "cansas2012": 4, "nxcansas_exampl": 4, "minimum": [4, 19, 36, 65, 78, 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107, 115, 116, 120, 137, 145, 147, 151], "ambigu": [4, 53, 81, 88, 107, 114, 116, 146, 147], "than": [4, 11, 19, 46, 48, 49, 52, 53, 57, 60, 65, 75, 80, 81, 88, 89, 91, 97, 107, 110, 114, 115, 116, 120, 121, 123, 127, 128, 132, 137, 145, 146, 147, 148, 151, 154, 155], "represent": [4, 11, 16, 47, 114, 115, 116, 125, 133, 137, 146, 147, 151], "Such": [4, 11, 19, 48, 53, 88, 89, 107, 110, 114, 115, 116, 120, 151], "subentri": [4, 53, 88, 107], "recogn": [4, 46, 57, 82, 83, 88, 95, 114, 121, 123, 137], "could": [4, 11, 39, 48, 49, 50, 54, 61, 82, 94, 114, 115, 121, 133, 145, 146, 147, 152], "els": [4, 29, 49, 73, 90, 116, 121, 125], "repres": [4, 11, 16, 29, 49, 50, 53, 64, 75, 88, 115, 116, 121, 125, 127, 130, 133, 136, 137, 143, 147, 148, 151], "identif": [4, 54, 64, 84, 91], "en": [4, 18, 20, 107, 114, 118, 121, 122, 145, 147], "entiti": [4, 133, 134, 138, 147], "associ": [4, 11, 48, 53, 68, 82, 107, 116, 118, 119, 120, 122, 130, 132, 133, 136, 145, 147, 151], "correl": [4, 65, 80], "vector": [4, 11, 39, 46, 51, 73, 84, 85, 89, 97, 116, 147], "magnitud": 4, "sasdata01": 4, "sure": [4, 89, 120, 125], "sever": [4, 11, 29, 49, 62, 112, 114, 116, 120, 130, 133, 137, 147, 151, 154], "mask_indic": 4, "indic": [4, 11, 17, 24, 26, 46, 47, 48, 49, 50, 51, 53, 62, 72, 80, 82, 97, 107, 114, 115, 116, 119, 126, 128, 141, 146, 147, 148], "relationship": [4, 48, 114, 127], "vari": [4, 8, 11, 16, 49, 51, 82, 85, 114, 137, 151], "paramet": [4, 8, 18, 26, 28, 46, 53, 54, 57, 59, 63, 74, 82, 83, 85, 88, 94, 100, 103, 104, 107, 116, 118, 120, 133, 138, 141, 147], "temperature_indic": [4, 48, 114, 151], "pressure_indic": [4, 48, 114], "arrai": [4, 11, 13, 16, 19, 26, 30, 31, 34, 35, 39, 41, 46, 48, 49, 50, 51, 55, 61, 65, 66, 68, 75, 80, 82, 83, 85, 97, 107, 115, 116, 118, 120, 133, 134, 137, 141, 143, 145, 146, 147, 148, 151, 152, 154], "independ": [4, 11, 48, 107, 114, 147, 154], "everi": [4, 48, 52, 55, 65, 72, 114, 127, 130, 133, 144, 147, 152, 154], "five": [4, 55, 65], "list": 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[4, 11], "where": [4, 9, 11, 14, 15, 30, 35, 46, 48, 49, 52, 55, 57, 62, 68, 73, 80, 81, 82, 83, 84, 89, 90, 95, 107, 114, 115, 120, 121, 123, 127, 130, 133, 137, 143, 146, 147, 148, 151, 152, 154], "fals": [4, 11, 48, 49, 146, 147], "true": [4, 11, 48, 49, 97, 120, 146, 147], "timestamp": [4, 52, 55, 65, 120, 121, 126], "iso": [4, 11, 114, 121], "8601": [4, 11, 114, 121], "accompani": [4, 114], "geometri": [4, 5, 7, 11, 14, 15, 31, 36, 37, 38, 40, 41, 45, 46, 47, 49, 51, 52, 56, 57, 60, 62, 63, 66, 67, 68, 69, 72, 73, 76, 82, 84, 86, 87, 89, 90, 92, 93, 94, 96, 97, 106, 107, 109], "pi": 4, "sin": 4, "warn": [4, 44, 110, 114, 119, 147, 151], "valid": [4, 11, 44, 49, 64, 75, 81, 94, 95, 104, 110, 114, 115, 116, 118, 119, 121, 127, 130, 131, 133, 138, 145, 146, 147, 153], "m": [4, 11, 57, 62, 66, 80, 107, 114, 116, 126, 127, 134, 146], "nm": [4, 87, 146], "prefer": [4, 47, 48, 53, 107, 114, 116, 127, 146, 151], "angstrom": [4, 69, 146], "uncertainti": [4, 48, 49, 65, 116], "flexibl": [4, 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"inspection": [[154, "index-5"]], "java; dawn": [[154, "index-35"]], "java; nxreader.zip": [[154, "index-36"]], "mixed; focus": [[154, "index-42"]], "mixed; zebra": [[154, "index-43"]], "nxbrowse (utility)": [[154, "index-3"]], "nxconvert (utility)": [[154, "index-4"]], "nxdir (utility)": [[154, "index-5"]], "nxingest (utility)": [[154, "index-6"]], "nxsummary": [[154, "index-9"]], "nxtranslate (utility)": [[154, "index-10"]], "programs": [[154, "index-1"]], "punx (utility)": [[154, "index-14"]], "software": [[154, "index-12"], [154, "index-2"]], "spec2nexus": [[154, "index-28"]], "tools": [[154, "index-29"]], "utilities": [[154, "index-0"]], "validate": [[154, "index-13"], [154, "index-14"]], "validation": [[154, "index-13"], [154, "index-14"], [155, "index-0"]], "nxvalidate": [[155, "index-2"]], "verification": [[155, "index-0"]]}}) \ No newline at end of file From cb9fb0920a4f48a84eb6c9dca5c9a84f4dc3cd90 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Thu, 12 Oct 2023 19:39:17 +0200 Subject: [PATCH 11/39] offset vector --- .../json/transformation_reader.py | 4 ++++ nexus_constructor/model/component.py | 4 ++++ nexus_constructor/model/transformation.py | 12 +++++++++++ nexus_constructor/transformation_view.py | 21 +++++++++---------- ui/transformation.py | 6 +++--- 5 files changed, 33 insertions(+), 14 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index c41260d17..93000e9dc 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -301,6 +301,9 @@ def _create_transformations(self, json_transformations: list): vector = self._find_attribute_in_list( CommonAttrs.VECTOR, name, attributes, [0.0, 0.0, 0.0] ) + offset_vector = self._find_attribute_in_list( + CommonAttrs.OFFSET, name, attributes, [0.0, 0.0, 0.0] + ) # This attribute is allowed to be missing, missing is equivalent to the value "." which means # depends on origin (end of dependency chain) depends_on = _find_attribute_from_list_or_dict( @@ -337,6 +340,7 @@ def _create_transformations(self, json_transformations: list): vector=QVector3D(*vector), depends_on=None, values=values, + offset_vector=QVector3D(*offset_vector) ) offset = self._find_attribute_in_list(CommonAttrs.OFFSET, name, attributes) if offset: diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 01bcf0737..3970acd72 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -243,6 +243,7 @@ def add_rotation( type=ValueTypes.DOUBLE, ), target_pos: int = -1, + offset: QVector3D = QVector3D() ) -> Transformation: """ Note, currently assumes angle is in degrees @@ -263,6 +264,7 @@ def add_rotation( depends_on, values, target_pos, + offset ) def _create_and_add_transform( @@ -275,6 +277,7 @@ def _create_and_add_transform( depends_on: Transformation, values: Union[Dataset, Group, StreamModule], target_pos: int = -1, + offset_vector: QVector3D = QVector3D() ) -> Transformation: if name is None: name = _generate_incremental_name(transformation_type, self.transforms) @@ -297,6 +300,7 @@ def _create_and_add_transform( transform.ui_value = angle_or_magnitude transform.units = units transform.vector = vector + transform.offset_vector = offset_vector transform.depends_on = depends_on transform.parent_component = self if target_pos: diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 71fbfd27c..75ebd5c15 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -67,6 +67,18 @@ def vector(self, new_vector: QVector3D): vector_as_np_array = np.array([new_vector.x(), new_vector.y(), new_vector.z()]) self.attributes.set_attribute_value(CommonAttrs.VECTOR, vector_as_np_array) + @property + def offset_vector(self) -> QVector3D: + vector = self.attributes.get_attribute_value(CommonAttrs.OFFSET) + return ( + QVector3D(vector[0], vector[1], vector[2]) if vector is not None else None + ) + + @offset_vector.setter + def offset_vector(self, new_vector: QVector3D): + vector_as_np_array = np.array([new_vector.x(), new_vector.y(), new_vector.z()]) + self.attributes.set_attribute_value(CommonAttrs.OFFSET, vector_as_np_array) + @property def ui_value(self) -> float: try: diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 56954494b..cfb5975a1 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -28,6 +28,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_parent = transformation.parent_component current_vector = self.transformation.vector self._fill_in_existing_fields(current_vector) + self._fill_in_existing_fields(self.transformation.offset_vector) self.transformation_frame.depends_on_text_box.setEnabled(False) self.disable() self._init_connections() @@ -60,11 +61,11 @@ def _fill_in_existing_fields(self, current_vector): self.transformation.values, self.transformation_frame.magnitude_widget ) self.transformation_frame.magnitude_widget.units = self.transformation.units - offset = QVector3D() #self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) + offset = QVector3D(1, 2, 3) # self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) if offset: - self.transformation_frame.x_spinbox_offset.setValue(offset[0]) - self.transformation_frame.y_spinbox_offset.setValue(offset[1]) - self.transformation_frame.z_spinbox_offset.setValue(offset[2]) + self.transformation_frame.x_spinbox_offset.setValue(offset.x()) + self.transformation_frame.y_spinbox_offset.setValue(offset.y()) + self.transformation_frame.z_spinbox_offset.setValue(offset.z()) self.update_depends_on_ui() def disable(self): @@ -112,17 +113,15 @@ def save_transformation_name(self): self.model.signals.transformation_changed.emit() def save_offset(self): - - offset_value = self.transformation_frame.x_spinbox_offset.value() - if offset_value is not None: - self.transformation.attributes.set_attribute_value( - CommonAttrs.OFFSET, offset_value - ) + self.transformation.offset_vector = QVector3D( + *[spinbox.value() for spinbox in self.transformation_frame.offset_spinboxes] + ) + self.model.signals.transformation_changed.emit() def save_all_changes(self): self.save_transformation_name() self.save_transformation_vector() -# self.save_offset() + self.save_offset() self.save_magnitude() diff --git a/ui/transformation.py b/ui/transformation.py index 1f7ba2db9..12eaeeb97 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -49,9 +49,9 @@ def setup_ui(self, transformation): hide_name_field=True, show_only_f142_stream=True, ) - # self.magnitude_widget.field_type_combo.setMaximumWidth(0) - # self.magnitude_widget.value_type_combo.setMaximumWidth(0) - # self.magnitude_widget.attrs_button.setMaximumWidth(0) + self.magnitude_widget.field_type_combo.setMaximumWidth(0) + self.magnitude_widget.value_type_combo.setMaximumWidth(0) + self.magnitude_widget.attrs_button.setMaximumWidth(0) self.magnitude_widget.setFrameShape(QFrame.NoFrame) self.magnitude_widget.setMinimumHeight(40) From f2bf8ff3a8ac584441e20bba4faa5a2b4a7d117e Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Thu, 12 Oct 2023 20:07:03 +0200 Subject: [PATCH 12/39] offset working in appearance but not adjjustment --- nexus_constructor/json/transformation_reader.py | 10 +++++----- nexus_constructor/model/transformation.py | 10 +++++----- nexus_constructor/transformation_view.py | 10 +++++----- 3 files changed, 15 insertions(+), 15 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 93000e9dc..5d0f10e8a 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -342,11 +342,11 @@ def _create_transformations(self, json_transformations: list): values=values, offset_vector=QVector3D(*offset_vector) ) - offset = self._find_attribute_in_list(CommonAttrs.OFFSET, name, attributes) - if offset: - transform.attributes.set_attribute_value( - CommonAttrs.OFFSET, offset, ValueTypes.FLOAT - ) + # offset = self._find_attribute_in_list(CommonAttrs.OFFSET, name, attributes) + # if offset: + # transform.attributes.set_attribute_value( + # CommonAttrs.OFFSET, offset, ValueTypes.FLOAT + # ) if depends_on not in DEPENDS_ON_IGNORE: depends_on_id = TransformId( *get_component_and_transform_name(depends_on) diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 75ebd5c15..fc5896661 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -115,22 +115,22 @@ def qmatrix(self) -> QMatrix4x4: """ transform = Qt3DCore.QTransform() transform.matrix() - offset = self.attributes.get_attribute_value(CommonAttrs.OFFSET) - if not offset: - offset = 0.0 + offset = QVector3D() # self.attributes.get_attribute_value(CommonAttrs.OFFSET) + # if not offset: + # offset = 0.0 if self.transform_type == TransformationType.ROTATION: # noramlise offset to get axis, then apply a rotation offset first to translate it, and then apply rotation # try setTranslation (to modify ({}.4)) # ORRRR # self.vector + offset quaternion = transform.fromAxisAndAngle( - self.vector, (self.ui_value + offset) * self._ui_scale_factor + self.vector, self.ui_value * self._ui_scale_factor #(self.ui_value + offset) * self._ui_scale_factor ) transform.setRotation(quaternion) elif self.transform_type == TransformationType.TRANSLATION: transform.setTranslation( self.vector.normalized() - * (self.ui_value + offset) + * (self.ui_value) # + offset) * self._ui_scale_factor ) else: diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index cfb5975a1..caca65a46 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -61,11 +61,11 @@ def _fill_in_existing_fields(self, current_vector): self.transformation.values, self.transformation_frame.magnitude_widget ) self.transformation_frame.magnitude_widget.units = self.transformation.units - offset = QVector3D(1, 2, 3) # self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) - if offset: - self.transformation_frame.x_spinbox_offset.setValue(offset.x()) - self.transformation_frame.y_spinbox_offset.setValue(offset.y()) - self.transformation_frame.z_spinbox_offset.setValue(offset.z()) + offset = self.transformation.attributes.get_attribute_value(CommonAttrs.OFFSET) + if offset is not None: + self.transformation_frame.x_spinbox_offset.setValue(offset[0]) + self.transformation_frame.y_spinbox_offset.setValue(offset[1]) + self.transformation_frame.z_spinbox_offset.setValue(offset[2]) self.update_depends_on_ui() def disable(self): From 090f3aa00dadf1ad8c0d2073fca1e7a6d4298118 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Fri, 13 Oct 2023 12:06:50 +0200 Subject: [PATCH 13/39] triggers all working --- nexus_constructor/transformation_view.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index caca65a46..b09a77913 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -38,9 +38,12 @@ def _init_connections(self): self.save_transformation_name ) - for box in self.transformation_frame.spinboxes[:-1]: + for box in self.transformation_frame.spinboxes: box.textChanged.connect(self.save_transformation_vector) + for box in self.transformation_frame.offset_spinboxes: + box.textChanged.connect(self.save_offset) + self.transformation_frame.magnitude_widget.value_line_edit.textChanged.connect( self.save_magnitude ) From a9ba6dfa63e9a62585e1721149a090a5707f1c7a Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Fri, 13 Oct 2023 13:53:05 +0200 Subject: [PATCH 14/39] test fixing --- nexus_constructor/json/transformation_reader.py | 2 +- nexus_constructor/model/transformation.py | 17 ++++++++--------- tests/json/test_transformation_reader.py | 6 ++++++ 3 files changed, 15 insertions(+), 10 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 5d0f10e8a..39b87b5ad 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -176,7 +176,7 @@ def _find_attribute_in_list( :return: The value of the attribute if is is found in the list, otherwise the failure value is returned. """ attribute = _find_attribute_from_list_or_dict(attribute_name, attributes_list) - if not attribute and attribute_name not in [CommonAttrs.OFFSET]: + if not attribute: self.warnings.append( TransformDependencyMissing( f"Unable to find {attribute_name} attribute in transformation" diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index fc5896661..6324b8de4 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -115,23 +115,22 @@ def qmatrix(self) -> QMatrix4x4: """ transform = Qt3DCore.QTransform() transform.matrix() - offset = QVector3D() # self.attributes.get_attribute_value(CommonAttrs.OFFSET) - # if not offset: - # offset = 0.0 if self.transform_type == TransformationType.ROTATION: - # noramlise offset to get axis, then apply a rotation offset first to translate it, and then apply rotation - # try setTranslation (to modify ({}.4)) - # ORRRR - # self.vector + offset + # apply offset first to translate it, and then apply rotation + transform.setTranslation( + self.offset_vector + ) quaternion = transform.fromAxisAndAngle( - self.vector, self.ui_value * self._ui_scale_factor #(self.ui_value + offset) * self._ui_scale_factor + self.vector, self.ui_value * self._ui_scale_factor ) + transform.setRotation(quaternion) elif self.transform_type == TransformationType.TRANSLATION: transform.setTranslation( self.vector.normalized() - * (self.ui_value) # + offset) + * self.ui_value * self._ui_scale_factor + + self.offset_vector ) else: raise ( diff --git a/tests/json/test_transformation_reader.py b/tests/json/test_transformation_reader.py index c4b9d6847..d276b3f41 100644 --- a/tests/json/test_transformation_reader.py +++ b/tests/json/test_transformation_reader.py @@ -332,6 +332,11 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE 2.0, 3.0, ] + transformation_json["children"][0]["attributes"][2]["offset"] = offset_vector = [ + 4.0, + 5.0, + 6.0, + ] depends_on = None values = _create_transformation_dataset(angle_or_magnitude, "double", name) @@ -345,6 +350,7 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE vector=QVector3D(*vector), depends_on=depends_on, values=values, + offset_vector=QVector3D(*offset_vector) ) From 3fe8960ee3388a1281d896b2415e9b7fc4b027a2 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Fri, 13 Oct 2023 14:01:40 +0200 Subject: [PATCH 15/39] tests fixed --- tests/model/test_transformations.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/tests/model/test_transformations.py b/tests/model/test_transformations.py index 3c62e5a00..f6ac252ea 100644 --- a/tests/model/test_transformations.py +++ b/tests/model/test_transformations.py @@ -20,6 +20,7 @@ def create_transform( type="translation", values=Dataset(parent_node=None, name="", values=None, type=ValueTypes.DOUBLE), units="m", + offset_vector=QVector3D(0., 0., 0.) ): translation = Transformation( name=name, @@ -30,6 +31,7 @@ def create_transform( ) translation.vector = vector + translation.offset_vector = offset_vector translation.transform_type = type translation.ui_value = ui_value translation.units = units From 1c50f1b4b6e0b3117f89bb3722205901be86dc36 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Fri, 13 Oct 2023 12:10:56 +0000 Subject: [PATCH 16/39] GO FORMAT YOURSELF (black) --- nexus_constructor/field_widget.py | 11 ++++++++++- nexus_constructor/json/transformation_reader.py | 2 +- nexus_constructor/model/component.py | 6 +++--- nexus_constructor/model/transformation.py | 8 ++------ tests/json/test_transformation_reader.py | 2 +- tests/model/test_transformations.py | 2 +- 6 files changed, 18 insertions(+), 13 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index ec6740a99..b1925dc37 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -178,7 +178,16 @@ def __init__( self.attrs_button.clicked.connect(self.show_attrs_dialog) self.layout = QHBoxLayout() - for widget in [self.field_name_edit, self.field_type_combo, self.value_line_edit, self.nx_class_combo, self.edit_button, self.value_type_combo, self.units_line_edit, self.attrs_button]: + for widget in [ + self.field_name_edit, + self.field_type_combo, + self.value_line_edit, + self.nx_class_combo, + self.edit_button, + self.value_type_combo, + self.units_line_edit, + self.attrs_button, + ]: self.layout.addWidget(widget) self.layout.setAlignment(Qt.AlignLeft) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 39b87b5ad..20952edef 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -340,7 +340,7 @@ def _create_transformations(self, json_transformations: list): vector=QVector3D(*vector), depends_on=None, values=values, - offset_vector=QVector3D(*offset_vector) + offset_vector=QVector3D(*offset_vector), ) # offset = self._find_attribute_in_list(CommonAttrs.OFFSET, name, attributes) # if offset: diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 3970acd72..c06d4d30d 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -243,7 +243,7 @@ def add_rotation( type=ValueTypes.DOUBLE, ), target_pos: int = -1, - offset: QVector3D = QVector3D() + offset: QVector3D = QVector3D(), ) -> Transformation: """ Note, currently assumes angle is in degrees @@ -264,7 +264,7 @@ def add_rotation( depends_on, values, target_pos, - offset + offset, ) def _create_and_add_transform( @@ -277,7 +277,7 @@ def _create_and_add_transform( depends_on: Transformation, values: Union[Dataset, Group, StreamModule], target_pos: int = -1, - offset_vector: QVector3D = QVector3D() + offset_vector: QVector3D = QVector3D(), ) -> Transformation: if name is None: name = _generate_incremental_name(transformation_type, self.transforms) diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 6324b8de4..8a87c26ec 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -117,9 +117,7 @@ def qmatrix(self) -> QMatrix4x4: transform.matrix() if self.transform_type == TransformationType.ROTATION: # apply offset first to translate it, and then apply rotation - transform.setTranslation( - self.offset_vector - ) + transform.setTranslation(self.offset_vector) quaternion = transform.fromAxisAndAngle( self.vector, self.ui_value * self._ui_scale_factor ) @@ -127,9 +125,7 @@ def qmatrix(self) -> QMatrix4x4: transform.setRotation(quaternion) elif self.transform_type == TransformationType.TRANSLATION: transform.setTranslation( - self.vector.normalized() - * self.ui_value - * self._ui_scale_factor + self.vector.normalized() * self.ui_value * self._ui_scale_factor + self.offset_vector ) else: diff --git a/tests/json/test_transformation_reader.py b/tests/json/test_transformation_reader.py index d276b3f41..c809c54b3 100644 --- a/tests/json/test_transformation_reader.py +++ b/tests/json/test_transformation_reader.py @@ -350,7 +350,7 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE vector=QVector3D(*vector), depends_on=depends_on, values=values, - offset_vector=QVector3D(*offset_vector) + offset_vector=QVector3D(*offset_vector), ) diff --git a/tests/model/test_transformations.py b/tests/model/test_transformations.py index f6ac252ea..a5cc96d7d 100644 --- a/tests/model/test_transformations.py +++ b/tests/model/test_transformations.py @@ -20,7 +20,7 @@ def create_transform( type="translation", values=Dataset(parent_node=None, name="", values=None, type=ValueTypes.DOUBLE), units="m", - offset_vector=QVector3D(0., 0., 0.) + offset_vector=QVector3D(0.0, 0.0, 0.0), ): translation = Transformation( name=name, From 09c2d0722b9313c8a8bde850e129524f5ba4c624 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Fri, 13 Oct 2023 12:12:53 +0000 Subject: [PATCH 17/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 5eca86784..6eea96633 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Oct 12, 2023.

+

This manual built Oct 13, 2023.

See also

This document is available in these formats online:

diff --git a/nx-class-documentation/html/searchindex.js b/nx-class-documentation/html/searchindex.js index b9bd229a7..ad0fd20dc 100644 --- a/nx-class-documentation/html/searchindex.js +++ b/nx-class-documentation/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["applying-nexus", "authorgroup", "classes/applications/NXarchive", "classes/applications/NXarpes", "classes/applications/NXcanSAS", "classes/applications/NXdirecttof", "classes/applications/NXfluo", "classes/applications/NXindirecttof", "classes/applications/NXiqproc", "classes/applications/NXlauetof", "classes/applications/NXmonopd", "classes/applications/NXmx", "classes/applications/NXrefscan", "classes/applications/NXreftof", "classes/applications/NXsas", "classes/applications/NXsastof", "classes/applications/NXscan", "classes/applications/NXspe", "classes/applications/NXsqom", "classes/applications/NXstxm", "classes/applications/NXtas", "classes/applications/NXtofnpd", "classes/applications/NXtofraw", 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94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 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134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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69, 94, 103, 104, 107, 115, 116, 147, 148, 152], "right": [0, 72, 73, 89, 90, 95, 116, 120, 122, 125, 127], "field": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 118, 121, 122, 127, 128, 133, 134, 137, 144, 145, 148, 151, 152, 154], "can": [0, 2, 4, 8, 9, 11, 14, 15, 16, 19, 21, 22, 23, 26, 29, 35, 37, 38, 46, 47, 48, 49, 50, 53, 57, 61, 62, 65, 68, 70, 72, 75, 76, 79, 82, 83, 84, 86, 88, 94, 95, 97, 114, 115, 116, 118, 120, 121, 122, 124, 125, 127, 129, 132, 133, 134, 137, 138, 140, 141, 143, 145, 147, 151, 152, 154, 155], "found": [0, 11, 48, 107, 114, 116, 132, 133, 134, 143, 147, 154], "after": [0, 2, 18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 119, 124, 127, 128, 130, 133, 138, 145, 148, 151, 154], "appropri": [0, 11, 19, 26, 48, 75, 89, 104, 114, 116, 120, 123, 127, 138, 143, 146, 147, 151, 152], "item": [0, 4, 11, 46, 48, 57, 60, 110, 115, 116, 120, 121, 122, 125, 127, 133, 138, 143, 144, 145, 151, 154], "case": [0, 4, 10, 11, 36, 38, 47, 49, 52, 62, 65, 72, 75, 82, 83, 89, 107, 109, 110, 114, 115, 116, 121, 122, 123, 127, 128, 132, 133, 134, 137, 138, 146, 147, 148], "both": [0, 4, 10, 14, 19, 48, 64, 65, 68, 73, 103, 104, 114, 115, 116, 123, 127, 129, 133, 137, 138, 143, 144, 145, 146, 148, 151, 152, 154, 155], "live": [0, 107, 116], "nxdetector": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 35, 43, 47, 50, 51, 55, 64, 72, 94, 97, 103, 104, 114, 116, 120, 121, 123, 126, 133, 147, 148, 151, 152], "choos": [0, 38, 116, 123, 125, 127, 128, 147], "probabl": [0, 60, 62], "least": [0, 4, 48, 53, 115, 116, 120, 121, 122, 127, 144, 147, 151], "normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 125, 128, 130, 133, 134, 138, 143, 148, 154], "intern": [0, 49, 62, 75, 109, 112, 113, 114, 116, 130, 133, 134, 138, 145, 152], "meet": [0, 53, 60, 112, 130, 136, 137, 144, 154], "domain": [0, 115, 133, 137, 154], "expert": [0, 151], "haggl": 0, "when": [0, 2, 4, 10, 11, 19, 47, 48, 49, 50, 51, 52, 53, 62, 65, 68, 75, 76, 81, 82, 86, 88, 89, 94, 107, 114, 115, 116, 120, 121, 122, 123, 127, 130, 133, 134, 137, 138, 142, 143, 145, 146, 147, 148, 152, 154], "peopl": [0, 127, 128, 130, 133, 151], "tend": 0, "everyth": [0, 69, 125, 143], "might": [0, 11, 48, 49, 60, 62, 94, 95, 107, 110, 114, 115, 116, 120, 121, 127, 133, 143, 147, 148, 152, 155], "come": [0, 55, 116], "test": [0, 118, 120, 134, 136, 138, 143, 147], "question": [0, 24, 111, 116, 131, 152, 153, 154], "common": [0, 4, 9, 11, 29, 36, 46, 49, 55, 57, 62, 65, 89, 112, 114, 115, 116, 120, 121, 127, 128, 130, 133, 134, 137, 144, 145, 147], "onli": [0, 11, 29, 46, 48, 49, 51, 52, 53, 57, 59, 60, 61, 72, 75, 81, 82, 83, 94, 95, 97, 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"NXmoderator": [[67, "nxmoderator"]], "NXmonitor": [[68, "nxmonitor"]], "NXmonochromator": [[69, "nxmonochromator"]], "NXnote": [[70, "nxnote"]], "NXobject": [[71, "nxobject"]], "NXoff_geometry": [[72, "nxoff-geometry"], [116, "nxoff-geometry"]], "NXorientation": [[73, "nxorientation"]], "NXparameters": [[74, "nxparameters"]], "NXpdb": [[75, "nxpdb"]], "NXpinhole": [[76, "nxpinhole"]], "NXpolarizer": [[77, "nxpolarizer"]], "NXpositioner": [[78, "nxpositioner"]], "NXprocess": [[79, "nxprocess"]], "NXreflections": [[80, "nxreflections"]], "NXroot": [[81, "nxroot"]], "NXsample": [[82, "nxsample"]], "NXsample_component": [[83, "nxsample-component"]], "NXsensor": [[84, "nxsensor"]], "NXshape": [[85, "nxshape"]], "NXslit": [[86, "nxslit"]], "NXsource": [[87, "nxsource"]], "NXsubentry": [[88, "nxsubentry"]], "NXtransformations": [[89, "nxtransformations"]], "NXtranslation": [[90, "nxtranslation"]], "NXuser": [[91, "nxuser"]], "NXvelocity_selector": [[92, "nxvelocity-selector"]], "NXxraylens": [[93, "nxxraylens"]], "Base Class Definitions": [[94, "base-class-definitions"]], "NXcontainer": [[95, "nxcontainer"]], "NXcsg": [[96, "nxcsg"]], "NXcxi_ptycho": [[97, "nxcxi-ptycho"]], "NXelectrostatic_kicker": [[98, "nxelectrostatic-kicker"]], "NXmagnetic_kicker": [[99, "nxmagnetic-kicker"]], "NXquadric": [[100, "nxquadric"]], "NXquadrupole_magnet": [[101, "nxquadrupole-magnet"]], "NXseparator": [[102, "nxseparator"]], "NXsnsevent": [[103, "nxsnsevent"]], "NXsnshisto": [[104, "nxsnshisto"]], "NXsolenoid_magnet": [[105, "nxsolenoid-magnet"]], "NXsolid_geometry": [[106, "nxsolid-geometry"]], "NXspecdata": [[107, "nxspecdata"]], "NXspin_rotator": [[108, "nxspin-rotator"]], "Contributed Definitions": [[109, "contributed-definitions"], [112, "contributed-definitions"]], "NeXus Class Definitions": [[110, "nexus-class-definitions"]], "Colophon": [[111, "colophon"]], "NeXus Community": [[112, "nexus-community"]], "NeXus Webpage": [[112, "nexus-webpage"]], "Other Ways NeXus Coordinates with the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional Data with Axis Data": [[114, "associating-multi-dimensional-data-with-axis-data"]], "Associating plottable data using attributes applied to the NXdata group": [[114, "associating-plottable-data-using-attributes-applied-to-the-nxdata-group"]], "Examples": [[114, "examples"]], "Associating plottable data by name using the axes attribute": [[114, "associating-plottable-data-by-name-using-the-axes-attribute"]], "Associating plottable data by dimension number using the axis attribute": [[114, "associating-plottable-data-by-dimension-number-using-the-axis-attribute"]], "Introduction to NeXus definitions": [[115, "introduction-to-nexus-definitions"]], "Overview of NeXus definitions": [[115, "overview-of-nexus-definitions"]], "Description": [[115, "description"], [115, "id1"]], "Symbols table": [[115, "symbols-table"]], "Annotated Structure": [[115, "annotated-structure"]], "Names (groups, fields, links, and attributes)": [[115, "names-groups-fields-links-and-attributes"]], "NeXus data type": 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Transformations": [[116, "coordinate-transformations"]], "Coordinate Transformation Field And Attributes": [[116, "coordinate-transformation-field-and-attributes"]], "Shape Descriptions": [[116, "shape-descriptions"]], "Detector Shape Descriptions": [[116, "detector-shape-descriptions"]], "Legacy Geometry Descriptions": [[116, "legacy-geometry-descriptions"]], "McStas and NXgeometry System": [[116, "mcstas-and-nxgeometry-system"]], "Simple (Spherical Polar) Coordinate System": [[116, "simple-spherical-polar-coordinate-system"]], "Rules and Underlying File Formats": [[116, "rules-and-underlying-file-formats"]], "About these docs": [[117, "about-these-docs"]], "Example NeXus programs using NAPI": [[118, "example-nexus-programs-using-napi"]], "NAPI Simple 2-D Write Example (C, F77, F90)": [[118, "napi-simple-2-d-write-example-c-f77-f90"]], "NAPI C Example: write simple NeXus file": [[118, "napi-c-example-write-simple-nexus-file"]], "NAPI F77 Example: write simple NeXus file": [[118, "napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, "writing-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "Reading a simple NeXus file using native HDF5 commands in C": [[119, "reading-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "EPICS Area Detector Examples": [[120, "epics-area-detector-examples"]], "HDF5 File Writing Plugin": [[120, "hdf5-file-writing-plugin"]], "configuration files": [[120, "configuration-files"]], "attributes.xml": [[120, "attributes-xml"]], "layout.xml": [[120, "layout-xml"]], "additional configuration": [[120, "additional-configuration"]], "Example view": [[120, "example-view"]], "Python code to store an image in a NeXus file": [[120, "python-code-to-store-an-image-in-a-nexus-file"]], "using the h5py package": [[120, "using-the-h5py-package"]], "using the nexusformat package": [[120, "using-the-nexusformat-package"]], "Visualization": [[120, "visualization"]], "Downloads": [[120, "downloads"], [126, "downloads"]], "Footnotes": [[120, "footnotes"]], "Python Examples using h5py": [[121, "python-examples-using-h5py"]], "Writing the simplest data using h5py": [[121, "writing-the-simplest-data-using-h5py"]], "Complete h5py example writing and reading a NeXus data file": [[121, "complete-h5py-example-writing-and-reading-a-nexus-data-file"]], "Writing the HDF5 file using h5py": [[121, "writing-the-hdf5-file-using-h5py"]], "Reading the HDF5 file using h5py": [[121, "reading-the-hdf5-file-using-h5py"]], "Finding the default plottable data": [[121, "finding-the-default-plottable-data"]], "Plotting the HDF5 file": [[121, "plotting-the-hdf5-file"]], "Links to Data in External HDF5 Files": [[121, "links-to-data-in-external-hdf5-files"]], "file: external_angles.hdf5": [[121, "file-external-angles-hdf5"]], "file: external_counts.hdf5": [[121, "file-external-counts-hdf5"]], "file: external_master.hdf5": [[121, "file-external-master-hdf5"]], "source code: externalExample.py": [[121, "source-code-externalexample-py"]], "downloads": [[121, "downloads"], [122, "downloads"], [123, "downloads"]], "h5py example writing the simplest NeXus data file": [[122, "h5py-example-writing-the-simplest-nexus-data-file"]], "h5py example writing a simple NeXus data file with links": [[123, "h5py-example-writing-a-simple-nexus-data-file-with-links"]], "Examples of writing and reading NeXus data files": [[124, "examples-of-writing-and-reading-nexus-data-files"]], "Code Examples in Various Languages": [[124, "code-examples-in-various-languages"]], "Code Examples that use the NeXus API (NAPI)": [[124, "code-examples-that-use-the-nexus-api-napi"]], "Code that reads NeXus data files": [[124, "code-that-reads-nexus-data-files"]], "Viewing 2-D Data from LRMECS": [[125, "viewing-2-d-data-from-lrmecs"]], "Visualize Using h5dump": [[125, "visualize-using-h5dump"]], "LRMECS lrcs3701 data: h5dump output": [[125, "lrmecs-lrcs3701-data-h5dump-output"]], "Visualize Using HDFview": [[125, "visualize-using-hdfview"]], "LRMECS lrcs3701 data: image": [[125, "lrmecs-lrcs3701-data-image"], [125, "id3"]], "Visualize Using IgorPro": [[125, "visualize-using-igorpro"]], "MATLAB Examples": [[126, "matlab-examples"]], "input.dat": [[126, "input-dat"]], "writing data": [[126, "writing-data"]], "reading data": [[126, "reading-data"]], "writing data file with links": [[126, "writing-data-file-with-links"]], "Frequently Asked Questions": [[127, "frequently-asked-questions"]], "Physical File format": [[128, "physical-file-format"]], "Choice of HDF as Underlying File Format": [[128, "choice-of-hdf-as-underlying-file-format"]], "Mapping NeXus into HDF": [[128, "mapping-nexus-into-hdf"]], "NeXus Repositories": [[129, "nexus-repositories"]], "Brief history of NeXus": [[130, "brief-history-of-nexus"]], "User Manual and Reference Documentation": [[131, "user-manual-and-reference-documentation"]], "Installation": [[132, "installation"], [143, "installation"]], "Precompiled Binary Installation": [[132, "precompiled-binary-installation"]], "Linux RPM Distribution Kits": [[132, "linux-rpm-distribution-kits"]], "Microsoft Windows Installation Kit": [[132, "microsoft-windows-installation-kit"]], "Mac OS X Installation Kit": [[132, "mac-os-x-installation-kit"]], "Source Installation": [[132, "source-installation"]], "NeXus Source Code Distribution": [[132, "nexus-source-code-distribution"]], "Releases": [[132, "releases"]], "NeXus definitions": [[132, "nexus-definitions"]], "Release Notes": [[132, "release-notes"]], "Release Process": [[132, "release-process"]], "Versioning (Tags)": [[132, "versioning-tags"]], "NeXus Introduction": [[133, "nexus-introduction"]], "What is NeXus?": [[133, "what-is-nexus"]], "A Set of Design Principles": [[133, "a-set-of-design-principles"]], "Example of a NeXus File": [[133, "example-of-a-nexus-file"]], "Important Classes": [[133, "important-classes"]], "Simple Example": [[133, "simple-example"]], "A Set of Data Storage Objects": [[133, "a-set-of-data-storage-objects"]], "A Set of Subroutines": [[133, "a-set-of-subroutines"]], "Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, "napi-fortran-77-interface"]], "NAPI Fortran 90 Interface": [[141, "napi-fortran-90-interface"]], "NAPI IDL Interface": [[142, "napi-idl-interface"]], "NAPI Java Interface": [[143, "napi-java-interface"]], "Acknowledgement": [[143, "acknowledgement"]], "Requirements": [[143, "requirements"]], "Installation under Windows": [[143, "installation-under-windows"]], "Installation under Unix": [[143, "installation-under-unix"]], "Running Programs with the NeXus API for Java": [[143, "running-programs-with-the-nexus-api-for-java"]], "Locating the shared libraries": [[143, "locating-the-shared-libraries"]], "Locating jnexus.jar": [[143, "locating-jnexus-jar"]], "Programming with the NeXus API for Java": [[143, "programming-with-the-nexus-api-for-java"]], "Data Writing and Reading": [[143, "data-writing-and-reading"]], "Inquiry Routines": [[143, "inquiry-routines"]], "Known Problems": [[143, "known-problems"]], "On-line Documentation": [[143, "on-line-documentation"]], "NIAC: The NeXus International Advisory Committee": [[144, "niac-the-nexus-international-advisory-committee"]], "NXDL: The NeXus Definition Language": [[145, "nxdl-the-nexus-definition-language"]], "Introduction": [[145, "introduction"]], "Writing references and anchors in the documentation.": [[145, null]], "NXDL Field Types and Units": [[146, "nxdl-field-types-and-units"]], "Field Types allowed in NXDL specifications": [[146, "field-types-allowed-in-nxdl-specifications"]], "Unit Categories allowed in NXDL specifications": [[146, "unit-categories-allowed-in-nxdl-specifications"]], "NXDL Elements and Field Types": [[147, "nxdl-elements-and-field-types"]], "NXDL Elements": [[147, "nxdl-elements"]], "attribute": [[147, "attribute"], [147, "id24"]], "choice": [[147, "choice"]], "definition": [[147, "definition"], [147, "nxdl-data-type-definition"]], "dimensions": [[147, "dimensions"], [147, "id12"], [147, "id25"]], "doc": [[147, "doc"], [147, "id13"], [147, "id19"], [147, "id21"], [147, "id35"], [147, 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"ignoreextrafields"]], "@ignoreExtraGroups": [[147, "ignoreextragroups"]], "@restricts": [[147, "restricts"]], "@svnid": [[147, "svnid"]], "Elements of definitionType": [[147, "elements-of-definitiontype"]], "Groups under definitionType": [[147, "groups-under-definitiontype"]], "definitionTypeAttr": [[147, "definitiontypeattr"]], "dimensionsType": [[147, "dimensionstype"]], "Attributes of dimensionsType": [[147, "attributes-of-dimensionstype"]], "@rank": [[147, "rank"]], "Elements of dimensionsType": [[147, "elements-of-dimensionstype"]], "dim": [[147, "dim"]], "@incr": [[147, "incr"]], "@index": [[147, "index"]], "@ref": [[147, "ref"]], "@refindex": [[147, "refindex"]], "@required": [[147, "required"]], "@value": [[147, "value"], [147, "id20"]], "docType": [[147, "doctype"]], "enumerationType": [[147, "enumerationtype"]], "Elements of enumerationType": [[147, "elements-of-enumerationtype"]], "item": [[147, "item"]], "fieldType": [[147, "fieldtype"]], "@axes": [[147, "axes"]], "@axis": [[147, "axis"]], "@data_offset": [[147, "data-offset"]], "@interpretation": [[147, "interpretation"]], "@long_name": [[147, "long-name"]], "@maxOccurs": [[147, "maxoccurs"], [147, "id29"]], "@minOccurs": [[147, "minoccurs"], [147, "id30"]], "@nameType": [[147, "nametype"]], "@primary": [[147, "primary"]], "@recommended": [[147, "recommended"], [147, "id33"]], "@signal": [[147, "signal"]], "@stride": [[147, "stride"]], "@units": [[147, "units"]], "choiceType": [[147, "choicetype"]], "Attributes of choiceType": [[147, "attributes-of-choicetype"]], "Elements of choiceType": [[147, "elements-of-choicetype"]], "groupType": [[147, "grouptype"]], "Attributes of groupType": [[147, "attributes-of-grouptype"]], "linkType": [[147, "linktype"]], "@napimount": [[147, "napimount"]], "@target": [[147, "target"]], "symbolsType": [[147, "symbolstype"]], "Elements of symbolsType": [[147, "elements-of-symbolstype"]], "symbol": [[147, "symbol"]], "basicComponent": [[147, "basiccomponent"]], "Attributes of 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133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 128, 134, 137, 147, 148, 151, 152], "reflect": [0, 46, 62, 66, 77, 80, 94, 107, 114, 127, 147], "type": [0, 2, 3, 4, 6, 8, 10, 11, 12, 14, 15, 16, 18, 19, 24, 25, 26, 27, 29, 38, 42, 45, 46, 49, 50, 51, 52, 53, 54, 56, 57, 58, 63, 66, 67, 68, 70, 75, 77, 80, 82, 84, 85, 87, 88, 89, 92, 93, 97, 100, 103, 104, 116, 118, 120, 121, 122, 127, 132, 133, 134, 137, 141, 143, 145, 148, 151, 154], "its": [0, 2, 4, 11, 16, 36, 37, 38, 39, 40, 41, 42, 45, 46, 48, 49, 50, 52, 53, 56, 57, 58, 59, 61, 62, 63, 64, 66, 67, 68, 69, 76, 77, 78, 82, 84, 85, 86, 87, 88, 89, 92, 93, 114, 115, 116, 120, 123, 127, 128, 133, 138, 144, 147, 151, 154, 155], "angl": [0, 3, 4, 7, 9, 10, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 30, 31, 34, 35, 36, 42, 45, 46, 48, 49, 52, 57, 61, 62, 66, 73, 80, 82, 85, 89, 92, 95, 103, 104, 107, 114, 116, 118, 121, 123, 127, 133, 145, 146, 147], "toward": [0, 7, 37, 38, 40, 49, 67, 76], "incom": [0, 27, 28, 36], "tell": [0, 120, 122, 125], "nxcrystal": [0, 10, 20, 64, 69, 94, 103, 104, 107, 115, 116, 147, 148, 152], "right": [0, 72, 73, 89, 90, 95, 116, 120, 122, 125, 127], "field": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 118, 121, 122, 127, 128, 133, 134, 137, 144, 145, 148, 151, 152, 154], "can": [0, 2, 4, 8, 9, 11, 14, 15, 16, 19, 21, 22, 23, 26, 29, 35, 37, 38, 46, 47, 48, 49, 50, 53, 57, 61, 62, 65, 68, 70, 72, 75, 76, 79, 82, 83, 84, 86, 88, 94, 95, 97, 114, 115, 116, 118, 120, 121, 122, 124, 125, 127, 129, 132, 133, 134, 137, 138, 140, 141, 143, 145, 147, 151, 152, 154, 155], "found": [0, 11, 48, 107, 114, 116, 132, 133, 134, 143, 147, 154], "after": [0, 2, 18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 119, 124, 127, 128, 130, 133, 138, 145, 148, 151, 154], "appropri": [0, 11, 19, 26, 48, 75, 89, 104, 114, 116, 120, 123, 127, 138, 143, 146, 147, 151, 152], "item": [0, 4, 11, 46, 48, 57, 60, 110, 115, 116, 120, 121, 122, 125, 127, 133, 138, 143, 144, 145, 151, 154], "case": [0, 4, 10, 11, 36, 38, 47, 49, 52, 62, 65, 72, 75, 82, 83, 89, 107, 109, 110, 114, 115, 116, 121, 122, 123, 127, 128, 132, 133, 134, 137, 138, 146, 147, 148], "both": [0, 4, 10, 14, 19, 48, 64, 65, 68, 73, 103, 104, 114, 115, 116, 123, 127, 129, 133, 137, 138, 143, 144, 145, 146, 148, 151, 152, 154, 155], "live": [0, 107, 116], "nxdetector": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 35, 43, 47, 50, 51, 55, 64, 72, 94, 97, 103, 104, 114, 116, 120, 121, 123, 126, 133, 147, 148, 151, 152], "choos": [0, 38, 116, 123, 125, 127, 128, 147], "probabl": [0, 60, 62], "least": [0, 4, 48, 53, 115, 116, 120, 121, 122, 127, 144, 147, 151], "normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 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"NXcite": [[43, "nxcite"]], "NXcollection": [[44, "nxcollection"], [151, "nxcollection"]], "NXcollimator": [[45, "nxcollimator"]], "NXcrystal": [[46, "nxcrystal"]], "NXcylindrical_geometry": [[47, "nxcylindrical-geometry"], [116, "nxcylindrical-geometry"]], "NXdata": [[48, "nxdata"]], "NXdetector": [[49, "nxdetector"]], "NXdetector_group": [[50, "nxdetector-group"]], "NXdetector_module": [[51, "nxdetector-module"]], "NXdisk_chopper": [[52, "nxdisk-chopper"]], "NXentry": [[53, "nxentry"]], "NXenvironment": [[54, "nxenvironment"]], "NXevent_data": [[55, "nxevent-data"]], "NXfermi_chopper": [[56, "nxfermi-chopper"]], "NXfilter": [[57, "nxfilter"]], "NXflipper": [[58, "nxflipper"]], "NXfresnel_zone_plate": [[59, "nxfresnel-zone-plate"]], "NXgeometry": [[60, "nxgeometry"]], "NXgrating": [[61, "nxgrating"]], "NXguide": [[62, "nxguide"]], "NXinsertion_device": [[63, "nxinsertion-device"]], "NXinstrument": [[64, "nxinstrument"]], "NXlog": [[65, "nxlog"]], "NXmirror": [[66, "nxmirror"]], 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the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional 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"Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, 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"inspection": [[154, "index-5"]], "java; dawn": [[154, "index-35"]], "java; nxreader.zip": [[154, "index-36"]], "mixed; focus": [[154, "index-42"]], "mixed; zebra": [[154, "index-43"]], "nxbrowse (utility)": [[154, "index-3"]], "nxconvert (utility)": [[154, "index-4"]], "nxdir (utility)": [[154, "index-5"]], "nxingest (utility)": [[154, "index-6"]], "nxsummary": [[154, "index-9"]], "nxtranslate (utility)": [[154, "index-10"]], "programs": [[154, "index-1"]], "punx (utility)": [[154, "index-14"]], "software": [[154, "index-12"], [154, "index-2"]], "spec2nexus": [[154, "index-28"]], "tools": [[154, "index-29"]], "utilities": [[154, "index-0"]], "validate": [[154, "index-13"], [154, "index-14"]], "validation": [[154, "index-13"], [154, "index-14"], [155, "index-0"]], "nxvalidate": [[155, "index-2"]], "verification": [[155, "index-0"]]}}) \ No newline at end of file From 7751656ec7b05dfc33ee41ecb5309792d2163479 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Fri, 13 Oct 2023 14:58:07 +0200 Subject: [PATCH 18/39] small refactor --- nexus_constructor/field_widget.py | 1 - nexus_constructor/json/transformation_reader.py | 7 +------ ui/transformation.py | 7 ------- 3 files changed, 1 insertion(+), 14 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index b1925dc37..37ef461ee 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -123,7 +123,6 @@ def __init__( self.unit_validator = UnitValidator() self.units_line_edit.setValidator(self.unit_validator) self.units_line_edit.setMinimumWidth(20) - # self.units_line_edit.setMaximumWidth(50) unit_size_policy = QSizePolicy() unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) unit_size_policy.setHorizontalStretch(1) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 20952edef..92ebd708a 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -30,7 +30,7 @@ create_fw_module_object, ) from nexus_constructor.model.transformation import Transformation -from nexus_constructor.model.value_type import VALUE_TYPE_TO_NP, ValueTypes +from nexus_constructor.model.value_type import VALUE_TYPE_TO_NP from nexus_constructor.transformations_list import TransformationsList TRANSFORMATION_MAP = { @@ -342,11 +342,6 @@ def _create_transformations(self, json_transformations: list): values=values, offset_vector=QVector3D(*offset_vector), ) - # offset = self._find_attribute_in_list(CommonAttrs.OFFSET, name, attributes) - # if offset: - # transform.attributes.set_attribute_value( - # CommonAttrs.OFFSET, offset, ValueTypes.FLOAT - # ) if depends_on not in DEPENDS_ON_IGNORE: depends_on_id = TransformId( *get_component_and_transform_name(depends_on) diff --git a/ui/transformation.py b/ui/transformation.py index 12eaeeb97..b9ea8db5b 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -57,17 +57,10 @@ def setup_ui(self, transformation): self.ui_placeholder_layout = QVBoxLayout() - # self.offset_box = QDoubleSpinBox(transformation) - # self.offset_box.setToolTip("Offset to the transformation.") - # self.offset_box.setMinimumWidth(100) - # self.offset_box.setMinimum(-1000) - # self.offset_box.setDecimals(5) offset_font = QFont() offset_font.setBold(True) self.offset_label = QLabel("Offset") self.offset_label.setFont(offset_font) - # self.ui_placeholder_layout.addWidget(self.offset_label) - # self.ui_placeholder_layout.addWidget(self.offset_box) self.depends_on_text_box = QLineEdit(transformation) self.depends_on_text_box.setToolTip("depends_on for transformation.") From 7f9ceee9aaf4fcb021de69aa76868f5a45dbcfa7 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Fri, 13 Oct 2023 16:35:23 +0200 Subject: [PATCH 19/39] review additions --- nexus_constructor/field_widget.py | 2 +- nexus_constructor/model/component.py | 4 ++-- nexus_constructor/model/transformation.py | 2 +- nexus_constructor/transformation_view.py | 17 +++++++-------- tests/model/test_transformations.py | 8 +++---- ui_tests/test_ui_transformation_view.py | 26 +++++++++++------------ 6 files changed, 29 insertions(+), 30 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index 37ef461ee..88947a002 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -438,7 +438,7 @@ def field_type_changed(self): self.edit_dialog = QDialog(parent=self) self.edit_dialog.setModal(True) self._set_up_value_validator(False) - if self.streams_widget and self.streams_widget._old_schema: + if self._node_parent and self.streams_widget and self.streams_widget._old_schema: self._node_parent.add_stream_module(self.streams_widget._old_schema) if self.field_type == FieldType.scalar_dataset: self.set_visibility(True, False, False, True) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index c06d4d30d..5a3826067 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -243,7 +243,7 @@ def add_rotation( type=ValueTypes.DOUBLE, ), target_pos: int = -1, - offset: QVector3D = QVector3D(), + offset_vector: Optional[QVector3D] = None, ) -> Transformation: """ Note, currently assumes angle is in degrees @@ -264,7 +264,7 @@ def add_rotation( depends_on, values, target_pos, - offset, + offset_vector if offset_vector is not None else QVector3D(0., 0., 0.), ) def _create_and_add_transform( diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 8a87c26ec..4c76b7837 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -71,7 +71,7 @@ def vector(self, new_vector: QVector3D): def offset_vector(self) -> QVector3D: vector = self.attributes.get_attribute_value(CommonAttrs.OFFSET) return ( - QVector3D(vector[0], vector[1], vector[2]) if vector is not None else None + QVector3D(vector[0], vector[1], vector[2]) if vector is not None else QVector3D(0., 0., 0.) ) @offset_vector.setter diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index b09a77913..c4f04c96a 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -127,6 +127,12 @@ def save_all_changes(self): self.save_offset() self.save_magnitude() + def transformation_text(self, transformation_type): + self.transformation_frame.vector_label.setText("Vector") + self.transformation_frame.value_label.setText("Magnitude") + self.transformation_frame.offset_label.setText("Offset") + self.setTitle(transformation_type) + class EditTranslation(EditTransformation): def __init__(self, parent: QWidget, transformation: Transformation, model: Model): @@ -134,7 +140,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( METRES ) - transformation_text(self, TransformationType.TRANSLATION) + self.transformation_text(TransformationType.TRANSLATION) class EditRotation(EditTransformation): @@ -143,14 +149,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame.magnitude_widget.unit_validator.expected_dimensionality = ( RADIANS ) - transformation_text(self, TransformationType.ROTATION) - - -def transformation_text(self, transformation_type): - self.transformation_frame.vector_label.setText("Vector") - self.transformation_frame.value_label.setText("Magnitude") - self.transformation_frame.offset_label.setText("Offset") - self.setTitle(transformation_type) + self.transformation_text(TransformationType.ROTATION) def links_back_to_component(reference: Component, comparison: Component): diff --git a/tests/model/test_transformations.py b/tests/model/test_transformations.py index a5cc96d7d..b36795a92 100644 --- a/tests/model/test_transformations.py +++ b/tests/model/test_transformations.py @@ -16,11 +16,11 @@ def create_transform( name="test translation", ui_value=42.0, - vector=QVector3D(1.0, 0.0, 0.0), + vector=None, type="translation", values=Dataset(parent_node=None, name="", values=None, type=ValueTypes.DOUBLE), units="m", - offset_vector=QVector3D(0.0, 0.0, 0.0), + offset_vector=None, ): translation = Transformation( name=name, @@ -30,8 +30,8 @@ def create_transform( parent_component=None, ) - translation.vector = vector - translation.offset_vector = offset_vector + translation.vector = vector if vector is not None else QVector3D(1.0, 0.0, 0.0) + translation.offset_vector = offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) translation.transform_type = type translation.ui_value = ui_value translation.units = units diff --git a/ui_tests/test_ui_transformation_view.py b/ui_tests/test_ui_transformation_view.py index 71b535c23..d01dc086c 100644 --- a/ui_tests/test_ui_transformation_view.py +++ b/ui_tests/test_ui_transformation_view.py @@ -12,6 +12,7 @@ from nexus_constructor.model.module import Dataset, F142Stream, Link from nexus_constructor.transformation_view import EditRotation, EditTranslation from nexus_constructor.validators import FieldType +from nexus_constructor.ui_utils import qvector3d_to_numpy_array @pytest.fixture @@ -37,7 +38,7 @@ def create_corresponding_value_dataset(value: Any): def test_UI_GIVEN_scalar_vector_WHEN_creating_translation_view_THEN_ui_is_filled_correctly( qtbot, model, component ): - x = 1 + x = 0 y = 0 z = 0 value = 0.0 @@ -62,9 +63,9 @@ def test_UI_GIVEN_scalar_vector_WHEN_creating_translation_view_THEN_ui_is_filled def test_UI_GIVEN_scalar_angle_WHEN_creating_rotation_view_THEN_ui_is_filled_correctly( qtbot, model, component ): - x = 1 - y = 2 - z = 3 + x = 0 + y = 0 + z = 0 angle = 90 transform = component.add_rotation(angle=angle, axis=QVector3D(x, y, z)) @@ -93,11 +94,10 @@ def test_UI_GIVEN_a_translation_with_zero_offset_WHEN_setting_the_offset_to_nonz view = EditTranslation(parent=None, transformation=transform, model=model) qtbot.addWidget(view) - view.transformation_frame.offset_box.setValue(9) + view.transformation_frame.offset_spinboxes[0].setValue(9) view.save_offset() - - assert transform.attributes.get_attribute_value(CommonAttrs.OFFSET) == 9 - assert view.transformation_frame.offset_box.value() == 9 + assert all(transform.attributes.get_attribute_value(CommonAttrs.OFFSET) == qvector3d_to_numpy_array(QVector3D(9, 0, 0))) + assert view.transformation_frame.offset_spinboxes[0].value() == 9 def test_UI_GIVEN_a_translation_with_nonzero_offset_WHEN_setting_the_offset_to_zero_THEN_ui_is_filled_correctly( @@ -106,15 +106,15 @@ def test_UI_GIVEN_a_translation_with_nonzero_offset_WHEN_setting_the_offset_to_z transform = component.add_translation(QVector3D(0, 0, 1), name="test") transform.values = create_corresponding_value_dataset(123) view = EditTranslation(parent=None, transformation=transform, model=model) - view.transformation_frame.offset_box.setValue(10) + view.transformation_frame.offset_spinboxes[0].setValue(10) qtbot.addWidget(view) view.save_offset() - view.transformation_frame.offset_box.setValue(0) + view.transformation_frame.offset_spinboxes[0].setValue(0) view.save_offset() - assert transform.attributes.get_attribute_value(CommonAttrs.OFFSET) == 0 - assert view.transformation_frame.offset_box.value() == 0 + assert all(transform.attributes.get_attribute_value(CommonAttrs.OFFSET) == qvector3d_to_numpy_array(QVector3D(0, 0, 0))) + assert view.transformation_frame.offset_spinboxes[0].value() == 0 def test_UI_GIVEN_array_dataset_as_magnitude_WHEN_creating_translation_THEN_ui_is_filled_correctly( @@ -122,7 +122,7 @@ def test_UI_GIVEN_array_dataset_as_magnitude_WHEN_creating_translation_THEN_ui_i ): array = np.array([1, 2, 3, 4]) - x = 1 + x = 0 y = 0 z = 0 transform = component.add_translation(QVector3D(x, y, z), name="test") From 39b98631809e1f7915b1835b5562f17156df7b62 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Mon, 16 Oct 2023 09:28:27 +0200 Subject: [PATCH 20/39] missed qvector 3D --- nexus_constructor/model/component.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 5a3826067..77bb6f7ff 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -277,7 +277,7 @@ def _create_and_add_transform( depends_on: Transformation, values: Union[Dataset, Group, StreamModule], target_pos: int = -1, - offset_vector: QVector3D = QVector3D(), + offset_vector: Optional[QVector3D] = None, ) -> Transformation: if name is None: name = _generate_incremental_name(transformation_type, self.transforms) @@ -300,7 +300,7 @@ def _create_and_add_transform( transform.ui_value = angle_or_magnitude transform.units = units transform.vector = vector - transform.offset_vector = offset_vector + transform.offset_vector = offset_vector if offset_vector is not None else QVector3D(0., 0., 0.) transform.depends_on = depends_on transform.parent_component = self if target_pos: From e2d8d0fca1c6a33841a5f16143d6049bb160f05a Mon Sep 17 00:00:00 2001 From: cow-bot Date: Mon, 16 Oct 2023 07:52:38 +0000 Subject: [PATCH 21/39] GO FORMAT YOURSELF (black) --- nexus_constructor/field_widget.py | 6 +++++- nexus_constructor/model/component.py | 6 ++++-- nexus_constructor/model/transformation.py | 4 +++- tests/model/test_transformations.py | 4 +++- 4 files changed, 15 insertions(+), 5 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index 88947a002..3a952cfe0 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -438,7 +438,11 @@ def field_type_changed(self): self.edit_dialog = QDialog(parent=self) self.edit_dialog.setModal(True) self._set_up_value_validator(False) - if self._node_parent and self.streams_widget and self.streams_widget._old_schema: + if ( + self._node_parent + and self.streams_widget + and self.streams_widget._old_schema + ): self._node_parent.add_stream_module(self.streams_widget._old_schema) if self.field_type == FieldType.scalar_dataset: self.set_visibility(True, False, False, True) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 77bb6f7ff..f68863864 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -264,7 +264,7 @@ def add_rotation( depends_on, values, target_pos, - offset_vector if offset_vector is not None else QVector3D(0., 0., 0.), + offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0), ) def _create_and_add_transform( @@ -300,7 +300,9 @@ def _create_and_add_transform( transform.ui_value = angle_or_magnitude transform.units = units transform.vector = vector - transform.offset_vector = offset_vector if offset_vector is not None else QVector3D(0., 0., 0.) + transform.offset_vector = ( + offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) + ) transform.depends_on = depends_on transform.parent_component = self if target_pos: diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 4c76b7837..2ec83f2c7 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -71,7 +71,9 @@ def vector(self, new_vector: QVector3D): def offset_vector(self) -> QVector3D: vector = self.attributes.get_attribute_value(CommonAttrs.OFFSET) return ( - QVector3D(vector[0], vector[1], vector[2]) if vector is not None else QVector3D(0., 0., 0.) + QVector3D(vector[0], vector[1], vector[2]) + if vector is not None + else QVector3D(0.0, 0.0, 0.0) ) @offset_vector.setter diff --git a/tests/model/test_transformations.py b/tests/model/test_transformations.py index b36795a92..c3b7fc542 100644 --- a/tests/model/test_transformations.py +++ b/tests/model/test_transformations.py @@ -31,7 +31,9 @@ def create_transform( ) translation.vector = vector if vector is not None else QVector3D(1.0, 0.0, 0.0) - translation.offset_vector = offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) + translation.offset_vector = ( + offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) + ) translation.transform_type = type translation.ui_value = ui_value translation.units = units From da60c44df6391dcdd09c06ce18c3ef2878d5d976 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Mon, 16 Oct 2023 07:54:01 +0000 Subject: [PATCH 22/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 6eea96633..2ea75060e 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Oct 13, 2023.

+

This manual built Oct 16, 2023.

See also

This document is available in these formats online:

diff --git a/nx-class-documentation/html/searchindex.js b/nx-class-documentation/html/searchindex.js index ad0fd20dc..e77017e63 100644 --- a/nx-class-documentation/html/searchindex.js +++ b/nx-class-documentation/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["applying-nexus", "authorgroup", "classes/applications/NXarchive", "classes/applications/NXarpes", "classes/applications/NXcanSAS", "classes/applications/NXdirecttof", "classes/applications/NXfluo", "classes/applications/NXindirecttof", "classes/applications/NXiqproc", "classes/applications/NXlauetof", "classes/applications/NXmonopd", "classes/applications/NXmx", "classes/applications/NXrefscan", "classes/applications/NXreftof", "classes/applications/NXsas", "classes/applications/NXsastof", "classes/applications/NXscan", "classes/applications/NXspe", "classes/applications/NXsqom", "classes/applications/NXstxm", "classes/applications/NXtas", "classes/applications/NXtofnpd", "classes/applications/NXtofraw", 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Constructing NeXus Files and Application Definitions", "9.1. Authors", "3.3.2.1. NXarchive", "3.3.2.2. NXarpes", "3.3.2.3. NXcanSAS", "3.3.2.4. NXdirecttof", "3.3.2.5. NXfluo", "3.3.2.6. NXindirecttof", "3.3.2.7. NXiqproc", "3.3.2.8. NXlauetof", "3.3.2.9. NXmonopd", "3.3.2.10. NXmx", "3.3.2.11. NXrefscan", "3.3.2.12. NXreftof", "3.3.2.13. NXsas", "3.3.2.14. NXsastof", "3.3.2.15. NXscan", "3.3.2.16. NXspe", "3.3.2.17. NXsqom", "3.3.2.18. NXstxm", "3.3.2.19. NXtas", "3.3.2.20. NXtofnpd", "3.3.2.21. NXtofraw", "3.3.2.22. NXtofsingle", "3.3.2.23. NXtomo", "3.3.2.24. NXtomophase", "3.3.2.25. NXtomoproc", "3.3.2.26. NXxas", "3.3.2.27. NXxasproc", "3.3.2.28. NXxbase", "3.3.2.29. NXxeuler", "3.3.2.30. NXxkappa", "3.3.2.31. NXxlaue", "3.3.2.32. NXxlaueplate", "3.3.2.33. NXxnb", "3.3.2.34. NXxrot", "3.3.2. Application Definitions", "3.3.1.1. NXaperture", "3.3.1.2. NXattenuator", "3.3.1.3. NXbeam", "3.3.1.4. NXbeam_stop", "3.3.1.5. NXbending_magnet", "3.3.1.6. NXcapillary", "3.3.1.7. NXcite", "3.3.1.8. NXcollection", "3.3.1.9. NXcollimator", "3.3.1.10. NXcrystal", "3.3.1.11. NXcylindrical_geometry", "3.3.1.12. NXdata", "3.3.1.13. NXdetector", "3.3.1.14. NXdetector_group", "3.3.1.15. NXdetector_module", "3.3.1.16. NXdisk_chopper", "3.3.1.17. NXentry", "3.3.1.18. NXenvironment", "3.3.1.19. NXevent_data", "3.3.1.20. NXfermi_chopper", "3.3.1.21. NXfilter", "3.3.1.22. NXflipper", "3.3.1.23. NXfresnel_zone_plate", "3.3.1.24. NXgeometry", "3.3.1.25. NXgrating", "3.3.1.26. NXguide", "3.3.1.27. NXinsertion_device", "3.3.1.28. NXinstrument", "3.3.1.29. NXlog", "3.3.1.30. NXmirror", "3.3.1.31. NXmoderator", "3.3.1.32. NXmonitor", "3.3.1.33. NXmonochromator", "3.3.1.34. NXnote", "3.3.1.35. NXobject", "3.3.1.36. NXoff_geometry", "3.3.1.37. NXorientation", "3.3.1.38. NXparameters", "3.3.1.39. NXpdb", "3.3.1.40. NXpinhole", "3.3.1.41. NXpolarizer", "3.3.1.42. NXpositioner", "3.3.1.43. NXprocess", "3.3.1.44. NXreflections", "3.3.1.45. NXroot", "3.3.1.46. NXsample", "3.3.1.47. NXsample_component", "3.3.1.48. NXsensor", "3.3.1.49. NXshape", "3.3.1.50. NXslit", "3.3.1.51. NXsource", "3.3.1.52. NXsubentry", "3.3.1.53. NXtransformations", "3.3.1.54. NXtranslation", "3.3.1.55. NXuser", "3.3.1.56. NXvelocity_selector", "3.3.1.57. NXxraylens", "3.3.1. Base Class Definitions", "3.3.3.1. NXcontainer", "3.3.3.2. NXcsg", "3.3.3.3. NXcxi_ptycho", "3.3.3.4. NXelectrostatic_kicker", "3.3.3.5. NXmagnetic_kicker", "3.3.3.6. NXquadric", "3.3.3.7. NXquadrupole_magnet", "3.3.3.8. NXseparator", "3.3.3.9. NXsnsevent", "3.3.3.10. NXsnshisto", "3.3.3.11. NXsolenoid_magnet", "3.3.3.12. NXsolid_geometry", "3.3.3.13. NXspecdata", "3.3.3.14. NXspin_rotator", "3.3.3. Contributed Definitions", "3.3. NeXus Class Definitions", "9.2. Colophon", "5. NeXus Community", "9.4. Copyright and Licenses", "1.2.3.2. Rules for Storing Data Items in NeXus Files", "3.1. Introduction to NeXus definitions", "1.2. NeXus Design", "9. About these docs", "2.2.1. Example NeXus programs using NAPI", "2.1.1. Example NeXus C programs using native HDF5 commands", "2.1.5. EPICS Area Detector Examples", "2.1.2. Python Examples using h5py", "h5py example writing the simplest NeXus data file", "h5py example writing a simple NeXus data file with links", "2. Examples of writing and reading NeXus data files", "2.1.4. Viewing 2-D Data from LRMECS", "2.1.3. MATLAB Examples", "1.6. Frequently Asked Questions", "1.2.3.3. Physical File format", "5.3.6. NeXus Repositories", "8. Brief history of NeXus", "User Manual and Reference Documentation", "6. Installation", "1.1. NeXus Introduction", "NAPI: The NeXus Application Programming Interface", "5.3.7. NeXus Issue Reporting", "5.3.2. NeXus Mailing List", "Motivations for the NeXus standard in the Scientific Community", "4. NAPI: NeXus Application Programmer Interface (frozen)", "4.3.1. NAPI C and C++ Interface", "4.3.2. NAPI Fortran 77 Interface", "4.3.3. NAPI Fortran 90 Interface", "4.3.5. NAPI IDL Interface", "4.3.4. NAPI Java Interface", "5.3.1. NIAC: The NeXus International Advisory Committee", "3.2. NXDL: The NeXus Definition Language", "3.2.1.2. NXDL Field Types and Units", "3.2.1.1. NXDL Elements and Field Types", "Representation of data examples", "3. NeXus: Reference Documentation", "9.3. Revision History", "1.2.3.1. Rules for Structuring Information in NeXus Files", "1.4. Strategies for storing information in NeXus data files", "1. NeXus: User Manual", "7. NeXus Utilities", "1.5. 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 125, 128, 130, 133, 134, 138, 143, 148, 154], "intern": [0, 49, 62, 75, 109, 112, 113, 114, 116, 130, 133, 134, 138, 145, 152], "meet": [0, 53, 60, 112, 130, 136, 137, 144, 154], "domain": [0, 115, 133, 137, 154], "expert": [0, 151], "haggl": 0, "when": [0, 2, 4, 10, 11, 19, 47, 48, 49, 50, 51, 52, 53, 62, 65, 68, 75, 76, 81, 82, 86, 88, 89, 94, 107, 114, 115, 116, 120, 121, 122, 123, 127, 130, 133, 134, 137, 138, 142, 143, 145, 146, 147, 148, 152, 154], "peopl": [0, 127, 128, 130, 133, 151], "tend": 0, "everyth": [0, 69, 125, 143], "might": [0, 11, 48, 49, 60, 62, 94, 95, 107, 110, 114, 115, 116, 120, 121, 127, 133, 143, 147, 148, 152, 155], "come": [0, 55, 116], "test": [0, 118, 120, 134, 136, 138, 143, 147], "question": [0, 24, 111, 116, 131, 152, 153, 154], "common": [0, 4, 9, 11, 29, 36, 46, 49, 55, 57, 62, 65, 89, 112, 114, 115, 116, 120, 121, 127, 128, 130, 133, 134, 137, 144, 145, 147], "onli": [0, 11, 29, 46, 48, 49, 51, 52, 53, 57, 59, 60, 61, 72, 75, 81, 82, 83, 94, 95, 97, 114, 115, 116, 120, 121, 122, 125, 127, 130, 132, 133, 136, 138, 143, 145, 146, 147, 148, 151, 152], "belong": [0, 115], "purpos": [0, 51, 68, 114, 118, 127, 133, 138, 144, 147, 154, 155], "author": [0, 70, 91, 103, 104, 109, 117, 126, 131, 145], "upstream": [0, 60, 61, 63, 87, 95], "softwar": [0, 3, 4, 11, 14, 15, 27, 28, 43, 48, 49, 72, 107, 114, 116, 120, 122, 124, 127, 128, 130, 133, 144, 145, 147, 152, 154, 155], "who": [0, 114, 121, 127, 128, 133, 134, 136, 151, 155], "consum": [0, 36, 116, 147], "expect": [0, 4, 17, 28, 32, 48, 69, 97, 103, 114, 116, 120, 121, 132, 137, 138, 146, 147], "certain": [0, 4, 11, 36, 48, 49, 53, 107, 114, 116, 121, 122, 123, 138, 145, 152, 154, 155], "well": [0, 107, 109, 110, 112, 114, 116, 127, 128, 132, 133, 135, 137, 143, 145, 147, 152, 154, 155], "place": [0, 4, 9, 30, 35, 44, 47, 70, 75, 76, 86, 107, 110, 112, 114, 116, 120, 122, 123, 127, 143, 148, 151, 152], "On": [0, 116, 125, 127, 138, 151], "hand": [0, 72, 73, 89, 90, 116, 127], "develop": 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114, 116, 143, 151, 154], "would": [0, 4, 8, 11, 14, 15, 24, 35, 43, 49, 65, 75, 87, 89, 90, 95, 114, 115, 116, 127, 129, 133, 137, 138, 143, 147, 148, 151, 152, 154], "nice": [0, 116], "temperatur": [0, 2, 3, 4, 8, 11, 17, 29, 46, 48, 53, 57, 65, 67, 82, 83, 84, 88, 103, 104, 107, 114, 116, 133, 146, 151, 152], "shown": [0, 4, 48, 53, 81, 88, 107, 114, 115, 116, 120, 121, 122, 123, 125, 133, 137, 147, 148, 151], "summar": [0, 4], "measur": [0, 2, 4, 8, 11, 13, 19, 24, 25, 26, 29, 34, 48, 49, 52, 53, 55, 62, 65, 67, 68, 80, 84, 88, 93, 94, 95, 114, 116, 122, 123, 127, 133, 154], "incid": [0, 4, 11, 14, 38, 39, 42, 46, 61, 62, 66, 68, 82, 94, 95, 97, 116], "lambda": [0, 4, 14, 107, 116, 133], "worri": 0, "too": [0, 16, 55, 114, 116, 151], "hold": [0, 19, 26, 30, 31, 34, 35, 48, 95, 109, 114, 121, 136, 143, 151], "reveal": 0, "secret": 0, "easier": [0, 121, 125, 133, 143], "were": [0, 65, 111, 116, 120, 121, 126, 127, 130, 137, 152], "At": [0, 11, 16, 49, 53, 55, 114, 115, 116, 128, 130, 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NXcite", "3.3.1.8. NXcollection", "3.3.1.9. NXcollimator", "3.3.1.10. NXcrystal", "3.3.1.11. NXcylindrical_geometry", "3.3.1.12. NXdata", "3.3.1.13. NXdetector", "3.3.1.14. NXdetector_group", "3.3.1.15. NXdetector_module", "3.3.1.16. NXdisk_chopper", "3.3.1.17. NXentry", "3.3.1.18. NXenvironment", "3.3.1.19. NXevent_data", "3.3.1.20. NXfermi_chopper", "3.3.1.21. NXfilter", "3.3.1.22. NXflipper", "3.3.1.23. NXfresnel_zone_plate", "3.3.1.24. NXgeometry", "3.3.1.25. NXgrating", "3.3.1.26. NXguide", "3.3.1.27. NXinsertion_device", "3.3.1.28. NXinstrument", "3.3.1.29. NXlog", "3.3.1.30. NXmirror", "3.3.1.31. NXmoderator", "3.3.1.32. NXmonitor", "3.3.1.33. NXmonochromator", "3.3.1.34. NXnote", "3.3.1.35. NXobject", "3.3.1.36. NXoff_geometry", "3.3.1.37. NXorientation", "3.3.1.38. NXparameters", "3.3.1.39. NXpdb", "3.3.1.40. NXpinhole", "3.3.1.41. NXpolarizer", "3.3.1.42. NXpositioner", "3.3.1.43. NXprocess", "3.3.1.44. NXreflections", "3.3.1.45. NXroot", "3.3.1.46. NXsample", "3.3.1.47. NXsample_component", "3.3.1.48. NXsensor", "3.3.1.49. NXshape", "3.3.1.50. NXslit", "3.3.1.51. NXsource", "3.3.1.52. NXsubentry", "3.3.1.53. NXtransformations", "3.3.1.54. NXtranslation", "3.3.1.55. NXuser", "3.3.1.56. NXvelocity_selector", "3.3.1.57. NXxraylens", "3.3.1. Base Class Definitions", "3.3.3.1. NXcontainer", "3.3.3.2. NXcsg", "3.3.3.3. NXcxi_ptycho", "3.3.3.4. NXelectrostatic_kicker", "3.3.3.5. NXmagnetic_kicker", "3.3.3.6. NXquadric", "3.3.3.7. NXquadrupole_magnet", "3.3.3.8. NXseparator", "3.3.3.9. NXsnsevent", "3.3.3.10. NXsnshisto", "3.3.3.11. NXsolenoid_magnet", "3.3.3.12. NXsolid_geometry", "3.3.3.13. NXspecdata", "3.3.3.14. NXspin_rotator", "3.3.3. Contributed Definitions", "3.3. NeXus Class Definitions", "9.2. Colophon", "5. NeXus Community", "9.4. Copyright and Licenses", "1.2.3.2. Rules for Storing Data Items in NeXus Files", "3.1. Introduction to NeXus definitions", "1.2. NeXus Design", "9. About these docs", "2.2.1. Example NeXus programs using NAPI", "2.1.1. Example NeXus C programs using native HDF5 commands", "2.1.5. EPICS Area Detector Examples", "2.1.2. Python Examples using h5py", "h5py example writing the simplest NeXus data file", "h5py example writing a simple NeXus data file with links", "2. Examples of writing and reading NeXus data files", "2.1.4. Viewing 2-D Data from LRMECS", "2.1.3. MATLAB Examples", "1.6. Frequently Asked Questions", "1.2.3.3. Physical File format", "5.3.6. NeXus Repositories", "8. Brief history of NeXus", "User Manual and Reference Documentation", "6. Installation", "1.1. NeXus Introduction", "NAPI: The NeXus Application Programming Interface", "5.3.7. NeXus Issue Reporting", "5.3.2. NeXus Mailing List", "Motivations for the NeXus standard in the Scientific Community", "4. NAPI: NeXus Application Programmer Interface (frozen)", "4.3.1. NAPI C and C++ Interface", "4.3.2. NAPI Fortran 77 Interface", "4.3.3. NAPI Fortran 90 Interface", "4.3.5. NAPI IDL Interface", "4.3.4. NAPI Java Interface", "5.3.1. NIAC: The NeXus International Advisory Committee", "3.2. NXDL: The NeXus Definition Language", "3.2.1.2. NXDL Field Types and Units", "3.2.1.1. NXDL Elements and Field Types", "Representation of data examples", "3. NeXus: Reference Documentation", "9.3. Revision History", "1.2.3.1. Rules for Structuring Information in NeXus Files", "1.4. Strategies for storing information in NeXus data files", "1. NeXus: User Manual", "7. NeXus Utilities", "1.5. 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 125, 128, 130, 133, 134, 138, 143, 148, 154], "intern": [0, 49, 62, 75, 109, 112, 113, 114, 116, 130, 133, 134, 138, 145, 152], "meet": [0, 53, 60, 112, 130, 136, 137, 144, 154], "domain": [0, 115, 133, 137, 154], "expert": [0, 151], "haggl": 0, "when": [0, 2, 4, 10, 11, 19, 47, 48, 49, 50, 51, 52, 53, 62, 65, 68, 75, 76, 81, 82, 86, 88, 89, 94, 107, 114, 115, 116, 120, 121, 122, 123, 127, 130, 133, 134, 137, 138, 142, 143, 145, 146, 147, 148, 152, 154], "peopl": [0, 127, 128, 130, 133, 151], "tend": 0, "everyth": [0, 69, 125, 143], "might": [0, 11, 48, 49, 60, 62, 94, 95, 107, 110, 114, 115, 116, 120, 121, 127, 133, 143, 147, 148, 152, 155], "come": [0, 55, 116], "test": [0, 118, 120, 134, 136, 138, 143, 147], "question": [0, 24, 111, 116, 131, 152, 153, 154], "common": [0, 4, 9, 11, 29, 36, 46, 49, 55, 57, 62, 65, 89, 112, 114, 115, 116, 120, 121, 127, 128, 130, 133, 134, 137, 144, 145, 147], "onli": [0, 11, 29, 46, 48, 49, 51, 52, 53, 57, 59, 60, 61, 72, 75, 81, 82, 83, 94, 95, 97, 114, 115, 116, 120, 121, 122, 125, 127, 130, 132, 133, 136, 138, 143, 145, 146, 147, 148, 151, 152], "belong": [0, 115], "purpos": [0, 51, 68, 114, 118, 127, 133, 138, 144, 147, 154, 155], "author": [0, 70, 91, 103, 104, 109, 117, 126, 131, 145], "upstream": [0, 60, 61, 63, 87, 95], "softwar": [0, 3, 4, 11, 14, 15, 27, 28, 43, 48, 49, 72, 107, 114, 116, 120, 122, 124, 127, 128, 130, 133, 144, 145, 147, 152, 154, 155], "who": [0, 114, 121, 127, 128, 133, 134, 136, 151, 155], "consum": [0, 36, 116, 147], "expect": [0, 4, 17, 28, 32, 48, 69, 97, 103, 114, 116, 120, 121, 132, 137, 138, 146, 147], "certain": [0, 4, 11, 36, 48, 49, 53, 107, 114, 116, 121, 122, 123, 138, 145, 152, 154, 155], "well": [0, 107, 109, 110, 112, 114, 116, 127, 128, 132, 133, 135, 137, 143, 145, 147, 152, 154, 155], "place": [0, 4, 9, 30, 35, 44, 47, 70, 75, 76, 86, 107, 110, 112, 114, 116, 120, 122, 123, 127, 143, 148, 151, 152], "On": [0, 116, 125, 127, 138, 151], "hand": [0, 72, 73, 89, 90, 116, 127], "develop": 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114, 116, 143, 151, 154], "would": [0, 4, 8, 11, 14, 15, 24, 35, 43, 49, 65, 75, 87, 89, 90, 95, 114, 115, 116, 127, 129, 133, 137, 138, 143, 147, 148, 151, 152, 154], "nice": [0, 116], "temperatur": [0, 2, 3, 4, 8, 11, 17, 29, 46, 48, 53, 57, 65, 67, 82, 83, 84, 88, 103, 104, 107, 114, 116, 133, 146, 151, 152], "shown": [0, 4, 48, 53, 81, 88, 107, 114, 115, 116, 120, 121, 122, 123, 125, 133, 137, 147, 148, 151], "summar": [0, 4], "measur": [0, 2, 4, 8, 11, 13, 19, 24, 25, 26, 29, 34, 48, 49, 52, 53, 55, 62, 65, 67, 68, 80, 84, 88, 93, 94, 95, 114, 116, 122, 123, 127, 133, 154], "incid": [0, 4, 11, 14, 38, 39, 42, 46, 61, 62, 66, 68, 82, 94, 95, 97, 116], "lambda": [0, 4, 14, 107, 116, 133], "worri": 0, "too": [0, 16, 55, 114, 116, 151], "hold": [0, 19, 26, 30, 31, 34, 35, 48, 95, 109, 114, 121, 136, 143, 151], "reveal": 0, "secret": 0, "easier": [0, 121, 125, 133, 143], "were": [0, 65, 111, 116, 120, 121, 126, 127, 130, 137, 152], "At": [0, 11, 16, 49, 53, 55, 114, 115, 116, 128, 130, 138, 155], "stage": [0, 89, 130], "advis": [0, 53, 137], "pull": [0, 112, 127, 129], "studi": [0, 116, 134, 143], "notic": [0, 119, 120, 127], "quickli": [0, 152], "realiz": 0, "been": [0, 3, 4, 10, 11, 17, 34, 49, 62, 82, 89, 114, 116, 120, 122, 123, 125, 126, 127, 130, 133, 134, 138, 143, 145, 147, 148, 152, 154, 155], "just": [0, 4, 19, 65, 107, 110, 114, 116, 120, 121, 133, 134, 143, 151, 152], "path": [0, 3, 11, 21, 22, 23, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 89, 90, 91, 92, 93, 94, 95, 96, 97, 100, 115, 116, 120, 121, 122, 123, 126, 127, 128, 133, 137, 142, 143, 147, 152, 154], "string": [0, 4, 19, 37, 38, 40, 41, 42, 45, 46, 48, 49, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 75, 77, 78, 82, 84, 87, 89, 92, 93, 103, 104, 107, 114, 115, 116, 119, 120, 121, 134, 138, 143, 146, 147, 148], "turn": [0, 58, 89, 132, 148], "syntax": [0, 111, 114, 116, 145, 147, 148], "conveni": [0, 19], "great": [0, 151], "confirm": 0, "view": [0, 116, 122, 124, 127, 128, 133, 134, 135, 137, 143, 145, 152, 154], "scan": [0, 4, 10, 11, 12, 16, 19, 20, 27, 29, 30, 31, 34, 35, 36, 49, 68, 78, 82, 97, 107, 114, 119, 121, 122, 127, 133, 134, 147, 154], "seem": [0, 121, 127, 143], "solut": [0, 143, 154], "But": [0, 4, 9, 11, 29, 49, 114, 116, 123, 127, 147, 154], "detail": [0, 4, 11, 43, 49, 70, 82, 95, 103, 104, 115, 116, 121, 132, 133, 134, 136, 138, 142, 143, 144, 147, 151, 154, 155], "branch": 0, "thu": [0, 4, 5, 11, 16, 48, 49, 51, 52, 55, 95, 114, 115, 116, 130, 133, 137, 143, 147, 151, 152, 154], "continu": [0, 112, 116, 124, 127, 133, 137, 154], "schemat": [0, 134], "inspect": [0, 127], "nxsourc": [0, 2, 3, 4, 6, 8, 10, 11, 12, 14, 15, 18, 19, 20, 24, 25, 26, 27, 29, 32, 64, 94, 97, 103, 104, 151], "polar": [0, 7, 9, 10, 12, 13, 14, 15, 17, 20, 21, 22, 23, 30, 31, 34, 35, 39, 46, 49, 62, 64, 77, 80, 94, 103, 104, 114], "still": [0, 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+0200 Subject: [PATCH 23/39] the WORKING units commit --- nexus_constructor/field_widget.py | 6 +++--- ui/transformation.py | 19 +++++++++++++++++++ 2 files changed, 22 insertions(+), 3 deletions(-) diff --git a/nexus_constructor/field_widget.py b/nexus_constructor/field_widget.py index 3a952cfe0..292aa1edf 100644 --- a/nexus_constructor/field_widget.py +++ b/nexus_constructor/field_widget.py @@ -95,6 +95,9 @@ def __init__( ): super(FieldWidget, self).__init__(parent) + fix_horizontal_size = QSizePolicy() + fix_horizontal_size.setHorizontalPolicy(QSizePolicy.Fixed) + possible_field_names = [] self.default_field_types_dict = {} self.streams_widget: StreamFieldsWidget = None @@ -127,13 +130,10 @@ def __init__( unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) unit_size_policy.setHorizontalStretch(1) self.units_line_edit.setSizePolicy(unit_size_policy) - self.unit_validator.is_valid.connect( partial(validate_line_edit, self.units_line_edit) ) self.units_line_edit.setPlaceholderText(CommonAttrs.UNITS) - fix_horizontal_size = QSizePolicy() - fix_horizontal_size.setHorizontalPolicy(QSizePolicy.Fixed) self.field_type_combo: QComboBox = QComboBox() self.field_type_combo.addItems([item.value for item in FieldType]) diff --git a/ui/transformation.py b/ui/transformation.py index b9ea8db5b..986d3b200 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -1,4 +1,5 @@ from typing import TYPE_CHECKING +from functools import partial from PySide6.QtCore import QMetaObject, QSize from PySide6.QtGui import QFont @@ -11,9 +12,13 @@ QLabel, QLineEdit, QVBoxLayout, + QSizePolicy ) +from nexus_constructor.common_attrs import CommonAttrs from nexus_constructor.field_widget import FieldWidget +from nexus_constructor.ui_utils import validate_line_edit +from nexus_constructor.validators import UnitValidator if TYPE_CHECKING: from nexus_constructor.transformation_view import EditTransformation @@ -61,6 +66,7 @@ def setup_ui(self, transformation): offset_font.setBold(True) self.offset_label = QLabel("Offset") self.offset_label.setFont(offset_font) + self.offset_line_edit = QLineEdit(transformation) self.depends_on_text_box = QLineEdit(transformation) self.depends_on_text_box.setToolTip("depends_on for transformation.") @@ -97,6 +103,19 @@ def setup_vector_layout(self, transformation): def setup_offset_layout(self, transformation): self.main_layout.addWidget(self.offset_label) self._set_up_vector_box_offset(transformation) + self.offset_units_line_edit = QLineEdit() + self.offset_unit_validator = UnitValidator() + self.offset_units_line_edit.setValidator(self.offset_unit_validator) + self.offset_units_line_edit.setMinimumWidth(20) + offset_unit_size_policy = QSizePolicy() + offset_unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) + offset_unit_size_policy.setHorizontalStretch(1) + self.offset_units_line_edit.setSizePolicy(offset_unit_size_policy) + self.offset_unit_validator.is_valid.connect( + partial(validate_line_edit, self.offset_units_line_edit) + ) + self.offset_units_line_edit.setPlaceholderText(CommonAttrs.UNITS) + self.main_layout.addWidget(self.offset_units_line_edit) self._add_line() def setup_name_layout(self): From 674e55398ea1b36e92fb1ee777f0884518d41260 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Wed, 18 Oct 2023 13:59:45 +0200 Subject: [PATCH 24/39] Working units with validator --- ui/transformation.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/ui/transformation.py b/ui/transformation.py index 986d3b200..1546a3957 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -19,6 +19,7 @@ from nexus_constructor.field_widget import FieldWidget from nexus_constructor.ui_utils import validate_line_edit from nexus_constructor.validators import UnitValidator +from nexus_constructor.unit_utils import METRES if TYPE_CHECKING: from nexus_constructor.transformation_view import EditTransformation @@ -104,13 +105,14 @@ def setup_offset_layout(self, transformation): self.main_layout.addWidget(self.offset_label) self._set_up_vector_box_offset(transformation) self.offset_units_line_edit = QLineEdit() - self.offset_unit_validator = UnitValidator() + self.offset_unit_validator = UnitValidator(expected_dimensionality=METRES) self.offset_units_line_edit.setValidator(self.offset_unit_validator) self.offset_units_line_edit.setMinimumWidth(20) offset_unit_size_policy = QSizePolicy() offset_unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) offset_unit_size_policy.setHorizontalStretch(1) self.offset_units_line_edit.setSizePolicy(offset_unit_size_policy) + self.offset_units_line_edit.setText("m") self.offset_unit_validator.is_valid.connect( partial(validate_line_edit, self.offset_units_line_edit) ) From 43bedad9c567e9d8bac0bacc66ac2c536b2b3084 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Wed, 18 Oct 2023 23:38:15 +0200 Subject: [PATCH 25/39] json complete but units written twice --- nexus_constructor/common_attrs.py | 1 + nexus_constructor/model/transformation.py | 9 +++++++++ nexus_constructor/transformation_view.py | 4 ++++ ui/transformation.py | 10 +++++++++- 4 files changed, 23 insertions(+), 1 deletion(-) diff --git a/nexus_constructor/common_attrs.py b/nexus_constructor/common_attrs.py index cbedf1a70..a3dfe1fa6 100644 --- a/nexus_constructor/common_attrs.py +++ b/nexus_constructor/common_attrs.py @@ -7,6 +7,7 @@ class CommonAttrs: NX_CLASS = "NX_class" DEPENDS_ON = "depends_on" TRANSFORMATION_TYPE = "transformation_type" + OFFSET_UNITS = "offset_units" VECTOR = "vector" UNITS = "units" VERTICES = "vertices" diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 2ec83f2c7..9eb22d9f3 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -145,6 +145,15 @@ def units(self, new_units): self._evaluate_ui_scale_factor(new_units) self.attributes.set_attribute_value(CommonAttrs.UNITS, new_units) + @property + def offset_units(self): + return self.attributes.get_attribute_value(CommonAttrs.OFFSET_UNITS) + + @offset_units.setter + def offset_units(self, new_units): + self._evaluate_ui_scale_factor(new_units) + self.attributes.set_attribute_value(CommonAttrs.OFFSET_UNITS, new_units) + def _evaluate_ui_scale_factor(self, units): try: if self.transform_type == TransformationType.TRANSLATION: diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index c4f04c96a..14d94165a 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -50,6 +50,9 @@ def _init_connections(self): self.transformation_frame.magnitude_widget.units_line_edit.textChanged.connect( self.save_magnitude ) + self.transformation_frame.offset_units_line_edit.textChanged.connect( + self.save_offset + ) if self.model: self.model.signals.transformation_changed.connect(self.update_depends_on_ui) @@ -119,6 +122,7 @@ def save_offset(self): self.transformation.offset_vector = QVector3D( *[spinbox.value() for spinbox in self.transformation_frame.offset_spinboxes] ) + self.transformation.offset_units = self.transformation_frame.offset_units self.model.signals.transformation_changed.emit() def save_all_changes(self): diff --git a/ui/transformation.py b/ui/transformation.py index 1546a3957..935422ebb 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -116,7 +116,7 @@ def setup_offset_layout(self, transformation): self.offset_unit_validator.is_valid.connect( partial(validate_line_edit, self.offset_units_line_edit) ) - self.offset_units_line_edit.setPlaceholderText(CommonAttrs.UNITS) + self.offset_units_line_edit.setPlaceholderText(CommonAttrs.OFFSET_UNITS) self.main_layout.addWidget(self.offset_units_line_edit) self._add_line() @@ -187,6 +187,14 @@ def set_spinbox_ranges(self): spinbox.setRange(-10000000, 10000000) spinbox.setDecimals(5) + @property + def offset_units(self) -> str: + return self.offset_units_line_edit.text() + + @offset_units.setter + def offset_units(self, new_units: str): + self.offset_units_line_edit.setText(new_units) + @staticmethod def _make_text_bold(label: QLabel): font = label.font() From 6db3e97e7d05bd0c31078c1cde580bf1951c7127 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Wed, 18 Oct 2023 22:51:20 +0000 Subject: [PATCH 26/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 2ea75060e..09b9aca93 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Oct 16, 2023.

+

This manual built Oct 18, 2023.

See also

This document is available in these formats online:

diff --git a/nx-class-documentation/html/searchindex.js b/nx-class-documentation/html/searchindex.js index e77017e63..18e0ef373 100644 --- a/nx-class-documentation/html/searchindex.js +++ b/nx-class-documentation/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["applying-nexus", "authorgroup", "classes/applications/NXarchive", "classes/applications/NXarpes", "classes/applications/NXcanSAS", "classes/applications/NXdirecttof", "classes/applications/NXfluo", "classes/applications/NXindirecttof", "classes/applications/NXiqproc", "classes/applications/NXlauetof", "classes/applications/NXmonopd", "classes/applications/NXmx", "classes/applications/NXrefscan", "classes/applications/NXreftof", "classes/applications/NXsas", "classes/applications/NXsastof", "classes/applications/NXscan", "classes/applications/NXspe", "classes/applications/NXsqom", "classes/applications/NXstxm", "classes/applications/NXtas", "classes/applications/NXtofnpd", "classes/applications/NXtofraw", 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112, 114, 122, 123, 126, 127, 144, 154], "sake": 0, "simplic": [0, 121], "bear": 0, "strong": [0, 80], "resembl": 0, "simpl": [0, 46, 57, 76, 79, 80, 82, 86, 94, 114, 115, 121, 122, 124, 125, 126, 127, 128, 134, 138, 145, 147, 148, 152, 154], "powder": [0, 10, 21, 22, 23, 36, 82, 116, 151], "diffractomet": [0, 9, 10, 21, 30, 31, 34, 36, 64, 82, 89, 107, 116, 151], "let": [0, 9, 29, 52, 120, 121, 143, 151, 152], "": [0, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 34, 35, 36, 48, 49, 57, 62, 82, 84, 87, 95, 107, 110, 114, 116, 119, 120, 121, 126, 127, 130, 132, 143, 146, 147, 148, 151], "pretend": 0, "cannot": [0, 4, 110, 114, 118, 143, 146, 147, 151], "ani": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 36, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 52, 53, 57, 58, 59, 61, 62, 63, 66, 67, 68, 70, 72, 81, 82, 83, 84, 85, 87, 88, 89, 93, 94, 95, 96, 97, 100, 107, 109, 111, 114, 116, 120, 125, 127, 129, 133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], 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48, 49, 57, 65, 69, 80, 82, 83, 95, 96, 110, 112, 114, 115, 116, 118, 121, 127, 130, 132, 133, 134, 138, 143, 145, 147, 151, 152], "store": [4, 11, 16, 18, 19, 25, 36, 39, 48, 49, 55, 65, 70, 73, 82, 94, 107, 118, 119, 121, 122, 123, 125, 126, 127, 128, 130, 131, 133, 134, 137, 141, 142, 143, 145, 147, 148, 151, 153], "reduc": [4, 8, 14, 18, 19, 36, 38, 49, 57, 82, 94, 110, 120, 138, 143, 145, 151], "small": [4, 14, 36, 53, 88, 116, 123, 127, 133, 144, 145, 147, 148], "scatter": [4, 14, 34, 36, 38, 39, 46, 48, 82, 83, 90, 95, 116, 127, 130, 133, 136, 137, 145, 146, 147, 154], "cansas1d": 4, "1": [4, 9, 11, 20, 23, 24, 27, 28, 29, 32, 46, 48, 49, 50, 53, 57, 62, 68, 70, 75, 79, 80, 82, 83, 84, 87, 89, 95, 97, 103, 104, 107, 109, 110, 113, 115, 116, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 132, 133, 134, 141, 143, 144, 145, 146, 147, 148, 151, 152, 154, 155], "io": [4, 114, 118, 120, 121, 122, 154, 155], "cansas2012": 4, "nxcansas_exampl": 4, "minimum": [4, 19, 36, 65, 78, 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107, 115, 116, 120, 137, 145, 147, 151], "ambigu": [4, 53, 81, 88, 107, 114, 116, 146, 147], "than": [4, 11, 19, 46, 48, 49, 52, 53, 57, 60, 65, 75, 80, 81, 88, 89, 91, 97, 107, 110, 114, 115, 116, 120, 121, 123, 127, 128, 132, 137, 145, 146, 147, 148, 151, 154, 155], "represent": [4, 11, 16, 47, 114, 115, 116, 125, 133, 137, 146, 147, 151], "Such": [4, 11, 19, 48, 53, 88, 89, 107, 110, 114, 115, 116, 120, 151], "subentri": [4, 53, 88, 107], "recogn": [4, 46, 57, 82, 83, 88, 95, 114, 121, 123, 137], "could": [4, 11, 39, 48, 49, 50, 54, 61, 82, 94, 114, 115, 121, 133, 145, 146, 147, 152], "els": [4, 29, 49, 73, 90, 116, 121, 125], "repres": [4, 11, 16, 29, 49, 50, 53, 64, 75, 88, 115, 116, 121, 125, 127, 130, 133, 136, 137, 143, 147, 148, 151], "identif": [4, 54, 64, 84, 91], "en": [4, 18, 20, 107, 114, 118, 121, 122, 145, 147], "entiti": [4, 133, 134, 138, 147], "associ": [4, 11, 48, 53, 68, 82, 107, 116, 118, 119, 120, 122, 130, 132, 133, 136, 145, 147, 151], "correl": [4, 65, 80], "vector": [4, 11, 39, 46, 51, 73, 84, 85, 89, 97, 116, 147], "magnitud": 4, "sasdata01": 4, "sure": [4, 89, 120, 125], "sever": [4, 11, 29, 49, 62, 112, 114, 116, 120, 130, 133, 137, 147, 151, 154], "mask_indic": 4, "indic": [4, 11, 17, 24, 26, 46, 47, 48, 49, 50, 51, 53, 62, 72, 80, 82, 97, 107, 114, 115, 116, 119, 126, 128, 141, 146, 147, 148], "relationship": [4, 48, 114, 127], "vari": [4, 8, 11, 16, 49, 51, 82, 85, 114, 137, 151], "paramet": [4, 8, 18, 26, 28, 46, 53, 54, 57, 59, 63, 74, 82, 83, 85, 88, 94, 100, 103, 104, 107, 116, 118, 120, 133, 138, 141, 147], "temperature_indic": [4, 48, 114, 151], "pressure_indic": [4, 48, 114], "arrai": [4, 11, 13, 16, 19, 26, 30, 31, 34, 35, 39, 41, 46, 48, 49, 50, 51, 55, 61, 65, 66, 68, 75, 80, 82, 83, 85, 97, 107, 115, 116, 118, 120, 133, 134, 137, 141, 143, 145, 146, 147, 148, 151, 152, 154], "independ": [4, 11, 48, 107, 114, 147, 154], "everi": [4, 48, 52, 55, 65, 72, 114, 127, 130, 133, 144, 147, 152, 154], "five": [4, 55, 65], "list": 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[4, 11], "where": [4, 9, 11, 14, 15, 30, 35, 46, 48, 49, 52, 55, 57, 62, 68, 73, 80, 81, 82, 83, 84, 89, 90, 95, 107, 114, 115, 120, 121, 123, 127, 130, 133, 137, 143, 146, 147, 148, 151, 152, 154], "fals": [4, 11, 48, 49, 146, 147], "true": [4, 11, 48, 49, 97, 120, 146, 147], "timestamp": [4, 52, 55, 65, 120, 121, 126], "iso": [4, 11, 114, 121], "8601": [4, 11, 114, 121], "accompani": [4, 114], "geometri": [4, 5, 7, 11, 14, 15, 31, 36, 37, 38, 40, 41, 45, 46, 47, 49, 51, 52, 56, 57, 60, 62, 63, 66, 67, 68, 69, 72, 73, 76, 82, 84, 86, 87, 89, 90, 92, 93, 94, 96, 97, 106, 107, 109], "pi": 4, "sin": 4, "warn": [4, 44, 110, 114, 119, 147, 151], "valid": [4, 11, 44, 49, 64, 75, 81, 94, 95, 104, 110, 114, 115, 116, 118, 119, 121, 127, 130, 131, 133, 138, 145, 146, 147, 153], "m": [4, 11, 57, 62, 66, 80, 107, 114, 116, 126, 127, 134, 146], "nm": [4, 87, 146], "prefer": [4, 47, 48, 53, 107, 114, 116, 127, 146, 151], "angstrom": [4, 69, 146], "uncertainti": [4, 48, 49, 65, 116], "flexibl": [4, 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112, 114, 122, 123, 126, 127, 144, 154], "sake": 0, "simplic": [0, 121], "bear": 0, "strong": [0, 80], "resembl": 0, "simpl": [0, 46, 57, 76, 79, 80, 82, 86, 94, 114, 115, 121, 122, 124, 125, 126, 127, 128, 134, 138, 145, 147, 148, 152, 154], "powder": [0, 10, 21, 22, 23, 36, 82, 116, 151], "diffractomet": [0, 9, 10, 21, 30, 31, 34, 36, 64, 82, 89, 107, 116, 151], "let": [0, 9, 29, 52, 120, 121, 143, 151, 152], "": [0, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 20, 21, 22, 23, 27, 28, 29, 30, 31, 32, 34, 35, 36, 48, 49, 57, 62, 82, 84, 87, 95, 107, 110, 114, 116, 119, 120, 121, 126, 127, 130, 132, 143, 146, 147, 148, 151], "pretend": 0, "cannot": [0, 4, 110, 114, 118, 143, 146, 147, 151], "ani": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 36, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 52, 53, 57, 58, 59, 61, 62, 63, 66, 67, 68, 70, 72, 81, 82, 83, 84, 85, 87, 88, 89, 93, 94, 95, 96, 97, 100, 107, 109, 111, 114, 116, 120, 125, 127, 129, 133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], 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48, 49, 57, 65, 69, 80, 82, 83, 95, 96, 110, 112, 114, 115, 116, 118, 121, 127, 130, 132, 133, 134, 138, 143, 145, 147, 151, 152], "store": [4, 11, 16, 18, 19, 25, 36, 39, 48, 49, 55, 65, 70, 73, 82, 94, 107, 118, 119, 121, 122, 123, 125, 126, 127, 128, 130, 131, 133, 134, 137, 141, 142, 143, 145, 147, 148, 151, 153], "reduc": [4, 8, 14, 18, 19, 36, 38, 49, 57, 82, 94, 110, 120, 138, 143, 145, 151], "small": [4, 14, 36, 53, 88, 116, 123, 127, 133, 144, 145, 147, 148], "scatter": [4, 14, 34, 36, 38, 39, 46, 48, 82, 83, 90, 95, 116, 127, 130, 133, 136, 137, 145, 146, 147, 154], "cansas1d": 4, "1": [4, 9, 11, 20, 23, 24, 27, 28, 29, 32, 46, 48, 49, 50, 53, 57, 62, 68, 70, 75, 79, 80, 82, 83, 84, 87, 89, 95, 97, 103, 104, 107, 109, 110, 113, 115, 116, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 132, 133, 134, 141, 143, 144, 145, 146, 147, 148, 151, 152, 154, 155], "io": [4, 114, 118, 120, 121, 122, 154, 155], "cansas2012": 4, "nxcansas_exampl": 4, "minimum": [4, 19, 36, 65, 78, 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107, 115, 116, 120, 137, 145, 147, 151], "ambigu": [4, 53, 81, 88, 107, 114, 116, 146, 147], "than": [4, 11, 19, 46, 48, 49, 52, 53, 57, 60, 65, 75, 80, 81, 88, 89, 91, 97, 107, 110, 114, 115, 116, 120, 121, 123, 127, 128, 132, 137, 145, 146, 147, 148, 151, 154, 155], "represent": [4, 11, 16, 47, 114, 115, 116, 125, 133, 137, 146, 147, 151], "Such": [4, 11, 19, 48, 53, 88, 89, 107, 110, 114, 115, 116, 120, 151], "subentri": [4, 53, 88, 107], "recogn": [4, 46, 57, 82, 83, 88, 95, 114, 121, 123, 137], "could": [4, 11, 39, 48, 49, 50, 54, 61, 82, 94, 114, 115, 121, 133, 145, 146, 147, 152], "els": [4, 29, 49, 73, 90, 116, 121, 125], "repres": [4, 11, 16, 29, 49, 50, 53, 64, 75, 88, 115, 116, 121, 125, 127, 130, 133, 136, 137, 143, 147, 148, 151], "identif": [4, 54, 64, 84, 91], "en": [4, 18, 20, 107, 114, 118, 121, 122, 145, 147], "entiti": [4, 133, 134, 138, 147], "associ": [4, 11, 48, 53, 68, 82, 107, 116, 118, 119, 120, 122, 130, 132, 133, 136, 145, 147, 151], "correl": [4, 65, 80], "vector": [4, 11, 39, 46, 51, 73, 84, 85, 89, 97, 116, 147], "magnitud": 4, "sasdata01": 4, "sure": [4, 89, 120, 125], "sever": [4, 11, 29, 49, 62, 112, 114, 116, 120, 130, 133, 137, 147, 151, 154], "mask_indic": 4, "indic": [4, 11, 17, 24, 26, 46, 47, 48, 49, 50, 51, 53, 62, 72, 80, 82, 97, 107, 114, 115, 116, 119, 126, 128, 141, 146, 147, 148], "relationship": [4, 48, 114, 127], "vari": [4, 8, 11, 16, 49, 51, 82, 85, 114, 137, 151], "paramet": [4, 8, 18, 26, 28, 46, 53, 54, 57, 59, 63, 74, 82, 83, 85, 88, 94, 100, 103, 104, 107, 116, 118, 120, 133, 138, 141, 147], "temperature_indic": [4, 48, 114, 151], "pressure_indic": [4, 48, 114], "arrai": [4, 11, 13, 16, 19, 26, 30, 31, 34, 35, 39, 41, 46, 48, 49, 50, 51, 55, 61, 65, 66, 68, 75, 80, 82, 83, 85, 97, 107, 115, 116, 118, 120, 133, 134, 137, 141, 143, 145, 146, 147, 148, 151, 152, 154], "independ": [4, 11, 48, 107, 114, 147, 154], "everi": [4, 48, 52, 55, 65, 72, 114, 127, 130, 133, 144, 147, 152, 154], "five": [4, 55, 65], "list": 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[4, 11], "where": [4, 9, 11, 14, 15, 30, 35, 46, 48, 49, 52, 55, 57, 62, 68, 73, 80, 81, 82, 83, 84, 89, 90, 95, 107, 114, 115, 120, 121, 123, 127, 130, 133, 137, 143, 146, 147, 148, 151, 152, 154], "fals": [4, 11, 48, 49, 146, 147], "true": [4, 11, 48, 49, 97, 120, 146, 147], "timestamp": [4, 52, 55, 65, 120, 121, 126], "iso": [4, 11, 114, 121], "8601": [4, 11, 114, 121], "accompani": [4, 114], "geometri": [4, 5, 7, 11, 14, 15, 31, 36, 37, 38, 40, 41, 45, 46, 47, 49, 51, 52, 56, 57, 60, 62, 63, 66, 67, 68, 69, 72, 73, 76, 82, 84, 86, 87, 89, 90, 92, 93, 94, 96, 97, 106, 107, 109], "pi": 4, "sin": 4, "warn": [4, 44, 110, 114, 119, 147, 151], "valid": [4, 11, 44, 49, 64, 75, 81, 94, 95, 104, 110, 114, 115, 116, 118, 119, 121, 127, 130, 131, 133, 138, 145, 146, 147, 153], "m": [4, 11, 57, 62, 66, 80, 107, 114, 116, 126, 127, 134, 146], "nm": [4, 87, 146], "prefer": [4, 47, 48, 53, 107, 114, 116, 127, 146, 151], "angstrom": [4, 69, 146], "uncertainti": [4, 48, 49, 65, 116], "flexibl": [4, 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"hdfexplorer": [[154, "index-30"]], "hdfview": [[154, "index-31"]], "idl (data analysis software)": [[154, "index-19"]], "idl; axis2000": [[154, "index-33"]], "igor pro (data analysis software)": [[154, "index-20"]], "isaw (data analysis software)": [[154, "index-21"]], "igorpro; hdf5gateway": [[154, "index-34"]], "lamp (data analysis software)": [[154, "index-22"]], "mantid (data analysis software)": [[154, "index-23"]], "nxplot (utility)": [[154, "index-11"]], "nexpy (data analysis software)": [[154, "index-25"]], "opengenie (data analysis software)": [[154, "index-26"]], "pymca (data analysis software)": [[154, "index-27"]], "python; dials": [[154, "index-37"]], "python; mantis": [[154, "index-39"]], "python; sasview": [[154, "index-41"]], "python; h5py": [[154, "index-38"]], "python; nexusformat": [[154, "index-40"]], "cnxvalidate (utility)": [[154, "index-13"]], "conversion": [[154, "index-4"]], "data analysis software": [[154, "index-12"]], "ingestion": [[154, "index-6"]], "inspection": [[154, "index-5"]], "java; dawn": [[154, "index-35"]], "java; nxreader.zip": [[154, "index-36"]], "mixed; focus": [[154, "index-42"]], "mixed; zebra": [[154, "index-43"]], "nxbrowse (utility)": [[154, "index-3"]], "nxconvert (utility)": [[154, "index-4"]], "nxdir (utility)": [[154, "index-5"]], "nxingest (utility)": [[154, "index-6"]], "nxsummary": [[154, "index-9"]], "nxtranslate (utility)": [[154, "index-10"]], "programs": [[154, "index-1"]], "punx (utility)": [[154, "index-14"]], "software": [[154, "index-12"], [154, "index-2"]], "spec2nexus": [[154, "index-28"]], "tools": [[154, "index-29"]], "utilities": [[154, "index-0"]], "validate": [[154, "index-13"], [154, "index-14"]], "validation": [[154, "index-13"], [154, "index-14"], [155, "index-0"]], "nxvalidate": [[155, "index-2"]], "verification": [[155, "index-0"]]}}) \ No newline at end of file From 2c9eb8a16907e3b86aab245b5f34b9c0eb63d8de Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 09:29:43 +0100 Subject: [PATCH 27/39] offset_units read correctly --- nexus_constructor/json/transformation_reader.py | 5 +++++ nexus_constructor/model/component.py | 2 ++ nexus_constructor/transformation_view.py | 1 + ui/transformation.py | 7 ++++++- 4 files changed, 14 insertions(+), 1 deletion(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 92ebd708a..f20becd6e 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -285,6 +285,10 @@ def _create_transformations(self, json_transformations: list): if not units: continue + offset_units = self._find_attribute_in_list(CommonAttrs.OFFSET_UNITS, name, attributes) + if not offset_units: + continue + transformation_type = self._find_attribute_in_list( CommonAttrs.TRANSFORMATION_TYPE, name, @@ -341,6 +345,7 @@ def _create_transformations(self, json_transformations: list): depends_on=None, values=values, offset_vector=QVector3D(*offset_vector), + offset_units=offset_units ) if depends_on not in DEPENDS_ON_IGNORE: depends_on_id = TransformId( diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index f68863864..055611156 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -278,6 +278,7 @@ def _create_and_add_transform( values: Union[Dataset, Group, StreamModule], target_pos: int = -1, offset_vector: Optional[QVector3D] = None, + offset_units: str = "" ) -> Transformation: if name is None: name = _generate_incremental_name(transformation_type, self.transforms) @@ -299,6 +300,7 @@ def _create_and_add_transform( transform.transform_type = transformation_type transform.ui_value = angle_or_magnitude transform.units = units + transform.offset_units = offset_units transform.vector = vector transform.offset_vector = ( offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 14d94165a..fe0eebfc0 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -72,6 +72,7 @@ def _fill_in_existing_fields(self, current_vector): self.transformation_frame.x_spinbox_offset.setValue(offset[0]) self.transformation_frame.y_spinbox_offset.setValue(offset[1]) self.transformation_frame.z_spinbox_offset.setValue(offset[2]) + self.transformation_frame.offset_units_line_edit.setText(self.transformation.offset_units) self.update_depends_on_ui() def disable(self): diff --git a/ui/transformation.py b/ui/transformation.py index 935422ebb..9c4027c71 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -112,7 +112,12 @@ def setup_offset_layout(self, transformation): offset_unit_size_policy.setHorizontalPolicy(QSizePolicy.Preferred) offset_unit_size_policy.setHorizontalStretch(1) self.offset_units_line_edit.setSizePolicy(offset_unit_size_policy) - self.offset_units_line_edit.setText("m") + if self.offset_units: + self.offset_units_line_edit.setText( + self.offset_units + ) + else: + self.offset_units_line_edit.setText("m") self.offset_unit_validator.is_valid.connect( partial(validate_line_edit, self.offset_units_line_edit) ) From 5cce65523805cfb64d9b83b3bb9b778247317f8a Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 10:31:54 +0100 Subject: [PATCH 28/39] removed passing of current_vector --- nexus_constructor/transformation_view.py | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index fe0eebfc0..3fffd8ab3 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -26,9 +26,7 @@ def __init__(self, parent: QWidget, transformation: Transformation, model: Model self.transformation_frame = UiTransformation(self) self.transformation = transformation self.transformation_parent = transformation.parent_component - current_vector = self.transformation.vector - self._fill_in_existing_fields(current_vector) - self._fill_in_existing_fields(self.transformation.offset_vector) + self._fill_in_existing_fields() self.transformation_frame.depends_on_text_box.setEnabled(False) self.disable() self._init_connections() @@ -56,11 +54,11 @@ def _init_connections(self): if self.model: self.model.signals.transformation_changed.connect(self.update_depends_on_ui) - def _fill_in_existing_fields(self, current_vector): + def _fill_in_existing_fields(self): self.transformation_frame.name_line_edit.setText(self.transformation.name) - self.transformation_frame.x_spinbox.setValue(current_vector.x()) - self.transformation_frame.y_spinbox.setValue(current_vector.y()) - self.transformation_frame.z_spinbox.setValue(current_vector.z()) + self.transformation_frame.x_spinbox.setValue(self.transformation.vector.x()) + self.transformation_frame.y_spinbox.setValue(self.transformation.vector.y()) + self.transformation_frame.z_spinbox.setValue(self.transformation.vector.z()) update_function = find_field_type(self.transformation.values) if update_function is not None: update_function( From 30a1d0853af2ee682ba9ff80d044f25cb4f4a315 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 15:20:00 +0100 Subject: [PATCH 29/39] fixed one test but why not the other --- tests/json/test_transformation_reader.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/tests/json/test_transformation_reader.py b/tests/json/test_transformation_reader.py index c809c54b3..b39e538e0 100644 --- a/tests/json/test_transformation_reader.py +++ b/tests/json/test_transformation_reader.py @@ -337,6 +337,7 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE 5.0, 6.0, ] + transformation_json["children"][0]["attributes"][2]["offset_units"] = offset_units = "mm" depends_on = None values = _create_transformation_dataset(angle_or_magnitude, "double", name) @@ -351,6 +352,7 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE depends_on=depends_on, values=values, offset_vector=QVector3D(*offset_vector), + offset_units=offset_units ) From f10cddc7eafb0ee5dbe09cd8119ef36976cdfaa0 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Tue, 24 Oct 2023 14:52:19 +0000 Subject: [PATCH 30/39] GO FORMAT YOURSELF (black) --- nexus_constructor/json/transformation_reader.py | 6 ++++-- nexus_constructor/model/component.py | 2 +- nexus_constructor/transformation_view.py | 4 +++- 3 files changed, 8 insertions(+), 4 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index f20becd6e..2444861da 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -285,7 +285,9 @@ def _create_transformations(self, json_transformations: list): if not units: continue - offset_units = self._find_attribute_in_list(CommonAttrs.OFFSET_UNITS, name, attributes) + offset_units = self._find_attribute_in_list( + CommonAttrs.OFFSET_UNITS, name, attributes + ) if not offset_units: continue @@ -345,7 +347,7 @@ def _create_transformations(self, json_transformations: list): depends_on=None, values=values, offset_vector=QVector3D(*offset_vector), - offset_units=offset_units + offset_units=offset_units, ) if depends_on not in DEPENDS_ON_IGNORE: depends_on_id = TransformId( diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 055611156..597a1856a 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -278,7 +278,7 @@ def _create_and_add_transform( values: Union[Dataset, Group, StreamModule], target_pos: int = -1, offset_vector: Optional[QVector3D] = None, - offset_units: str = "" + offset_units: str = "", ) -> Transformation: if name is None: name = _generate_incremental_name(transformation_type, self.transforms) diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index fe0eebfc0..37e043f70 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -72,7 +72,9 @@ def _fill_in_existing_fields(self, current_vector): self.transformation_frame.x_spinbox_offset.setValue(offset[0]) self.transformation_frame.y_spinbox_offset.setValue(offset[1]) self.transformation_frame.z_spinbox_offset.setValue(offset[2]) - self.transformation_frame.offset_units_line_edit.setText(self.transformation.offset_units) + self.transformation_frame.offset_units_line_edit.setText( + self.transformation.offset_units + ) self.update_depends_on_ui() def disable(self): From 76fd2a105fc3e12f87e7694eb1907ea72831af01 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Tue, 24 Oct 2023 14:53:42 +0000 Subject: [PATCH 31/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 09b9aca93..946ef0b42 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Oct 18, 2023.

+

This manual built Oct 24, 2023.

See also

This document is available in these formats online:

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Example NeXus C programs using native HDF5 commands", "2.1.5. EPICS Area Detector Examples", "2.1.2. Python Examples using h5py", "h5py example writing the simplest NeXus data file", "h5py example writing a simple NeXus data file with links", "2. Examples of writing and reading NeXus data files", "2.1.4. Viewing 2-D Data from LRMECS", "2.1.3. MATLAB Examples", "1.6. Frequently Asked Questions", "1.2.3.3. Physical File format", "5.3.6. NeXus Repositories", "8. Brief history of NeXus", "User Manual and Reference Documentation", "6. Installation", "1.1. NeXus Introduction", "NAPI: The NeXus Application Programming Interface", "5.3.7. NeXus Issue Reporting", "5.3.2. NeXus Mailing List", "Motivations for the NeXus standard in the Scientific Community", "4. NAPI: NeXus Application Programmer Interface (frozen)", "4.3.1. NAPI C and C++ Interface", "4.3.2. NAPI Fortran 77 Interface", "4.3.3. NAPI Fortran 90 Interface", "4.3.5. NAPI IDL Interface", "4.3.4. NAPI Java Interface", "5.3.1. NIAC: The NeXus International Advisory Committee", "3.2. NXDL: The NeXus Definition Language", "3.2.1.2. NXDL Field Types and Units", "3.2.1.1. NXDL Elements and Field Types", "Representation of data examples", "3. NeXus: Reference Documentation", "9.3. Revision History", "1.2.3.1. Rules for Structuring Information in NeXus Files", "1.4. Strategies for storing information in NeXus data files", "1. NeXus: User Manual", "7. NeXus Utilities", "1.5. 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154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 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104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 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114, 115, 116, 120, 121, 122, 125, 127, 130, 132, 133, 136, 138, 143, 145, 146, 147, 148, 151, 152], "belong": [0, 115], "purpos": [0, 51, 68, 114, 118, 127, 133, 138, 144, 147, 154, 155], "author": [0, 70, 91, 103, 104, 109, 117, 126, 131, 145], "upstream": [0, 60, 61, 63, 87, 95], "softwar": [0, 3, 4, 11, 14, 15, 27, 28, 43, 48, 49, 72, 107, 114, 116, 120, 122, 124, 127, 128, 130, 133, 144, 145, 147, 152, 154, 155], "who": [0, 114, 121, 127, 128, 133, 134, 136, 151, 155], "consum": [0, 36, 116, 147], "expect": [0, 4, 17, 28, 32, 48, 69, 97, 103, 114, 116, 120, 121, 132, 137, 138, 146, 147], "certain": [0, 4, 11, 36, 48, 49, 53, 107, 114, 116, 121, 122, 123, 138, 145, 152, 154, 155], "well": [0, 107, 109, 110, 112, 114, 116, 127, 128, 132, 133, 135, 137, 143, 145, 147, 152, 154, 155], "place": [0, 4, 9, 30, 35, 44, 47, 70, 75, 76, 86, 107, 110, 112, 114, 116, 120, 122, 123, 127, 143, 148, 151, 152], "On": [0, 116, 125, 127, 138, 151], "hand": [0, 72, 73, 89, 90, 116, 127], "develop": 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114, 116, 143, 151, 154], "would": [0, 4, 8, 11, 14, 15, 24, 35, 43, 49, 65, 75, 87, 89, 90, 95, 114, 115, 116, 127, 129, 133, 137, 138, 143, 147, 148, 151, 152, 154], "nice": [0, 116], "temperatur": [0, 2, 3, 4, 8, 11, 17, 29, 46, 48, 53, 57, 65, 67, 82, 83, 84, 88, 103, 104, 107, 114, 116, 133, 146, 151, 152], "shown": [0, 4, 48, 53, 81, 88, 107, 114, 115, 116, 120, 121, 122, 123, 125, 133, 137, 147, 148, 151], "summar": [0, 4], "measur": [0, 2, 4, 8, 11, 13, 19, 24, 25, 26, 29, 34, 48, 49, 52, 53, 55, 62, 65, 67, 68, 80, 84, 88, 93, 94, 95, 114, 116, 122, 123, 127, 133, 154], "incid": [0, 4, 11, 14, 38, 39, 42, 46, 61, 62, 66, 68, 82, 94, 95, 97, 116], "lambda": [0, 4, 14, 107, 116, 133], "worri": 0, "too": [0, 16, 55, 114, 116, 151], "hold": [0, 19, 26, 30, 31, 34, 35, 48, 95, 109, 114, 121, 136, 143, 151], "reveal": 0, "secret": 0, "easier": [0, 121, 125, 133, 143], "were": [0, 65, 111, 116, 120, 121, 126, 127, 130, 137, 152], "At": [0, 11, 16, 49, 53, 55, 114, 115, 116, 128, 130, 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"napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, 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154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 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18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 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"normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 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104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 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114, 115, 116, 120, 121, 122, 125, 127, 130, 132, 133, 136, 138, 143, 145, 146, 147, 148, 151, 152], "belong": [0, 115], "purpos": [0, 51, 68, 114, 118, 127, 133, 138, 144, 147, 154, 155], "author": [0, 70, 91, 103, 104, 109, 117, 126, 131, 145], "upstream": [0, 60, 61, 63, 87, 95], "softwar": [0, 3, 4, 11, 14, 15, 27, 28, 43, 48, 49, 72, 107, 114, 116, 120, 122, 124, 127, 128, 130, 133, 144, 145, 147, 152, 154, 155], "who": [0, 114, 121, 127, 128, 133, 134, 136, 151, 155], "consum": [0, 36, 116, 147], "expect": [0, 4, 17, 28, 32, 48, 69, 97, 103, 114, 116, 120, 121, 132, 137, 138, 146, 147], "certain": [0, 4, 11, 36, 48, 49, 53, 107, 114, 116, 121, 122, 123, 138, 145, 152, 154, 155], "well": [0, 107, 109, 110, 112, 114, 116, 127, 128, 132, 133, 135, 137, 143, 145, 147, 152, 154, 155], "place": [0, 4, 9, 30, 35, 44, 47, 70, 75, 76, 86, 107, 110, 112, 114, 116, 120, 122, 123, 127, 143, 148, 151, 152], "On": [0, 116, 125, 127, 138, 151], "hand": [0, 72, 73, 89, 90, 116, 127], "develop": 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114, 116, 143, 151, 154], "would": [0, 4, 8, 11, 14, 15, 24, 35, 43, 49, 65, 75, 87, 89, 90, 95, 114, 115, 116, 127, 129, 133, 137, 138, 143, 147, 148, 151, 152, 154], "nice": [0, 116], "temperatur": [0, 2, 3, 4, 8, 11, 17, 29, 46, 48, 53, 57, 65, 67, 82, 83, 84, 88, 103, 104, 107, 114, 116, 133, 146, 151, 152], "shown": [0, 4, 48, 53, 81, 88, 107, 114, 115, 116, 120, 121, 122, 123, 125, 133, 137, 147, 148, 151], "summar": [0, 4], "measur": [0, 2, 4, 8, 11, 13, 19, 24, 25, 26, 29, 34, 48, 49, 52, 53, 55, 62, 65, 67, 68, 80, 84, 88, 93, 94, 95, 114, 116, 122, 123, 127, 133, 154], "incid": [0, 4, 11, 14, 38, 39, 42, 46, 61, 62, 66, 68, 82, 94, 95, 97, 116], "lambda": [0, 4, 14, 107, 116, 133], "worri": 0, "too": [0, 16, 55, 114, 116, 151], "hold": [0, 19, 26, 30, 31, 34, 35, 48, 95, 109, 114, 121, 136, 143, 151], "reveal": 0, "secret": 0, "easier": [0, 121, 125, 133, 143], "were": [0, 65, 111, 116, 120, 121, 126, 127, 130, 137, 152], "At": [0, 11, 16, 49, 53, 55, 114, 115, 116, 128, 130, 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"napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, 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"inspection": [[154, "index-5"]], "java; dawn": [[154, "index-35"]], "java; nxreader.zip": [[154, "index-36"]], "mixed; focus": [[154, "index-42"]], "mixed; zebra": [[154, "index-43"]], "nxbrowse (utility)": [[154, "index-3"]], "nxconvert (utility)": [[154, "index-4"]], "nxdir (utility)": [[154, "index-5"]], "nxingest (utility)": [[154, "index-6"]], "nxsummary": [[154, "index-9"]], "nxtranslate (utility)": [[154, "index-10"]], "programs": [[154, "index-1"]], "punx (utility)": [[154, "index-14"]], "software": [[154, "index-12"], [154, "index-2"]], "spec2nexus": [[154, "index-28"]], "tools": [[154, "index-29"]], "utilities": [[154, "index-0"]], "validate": [[154, "index-13"], [154, "index-14"]], "validation": [[154, "index-13"], [154, "index-14"], [155, "index-0"]], "nxvalidate": [[155, "index-2"]], "verification": [[155, "index-0"]]}}) \ No newline at end of file From 1402616722060d7c0280fff5d133a3abae9b5bb6 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 18:11:29 +0100 Subject: [PATCH 32/39] working tests --- nexus_constructor/json/transformation_reader.py | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index f20becd6e..b3389e78b 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -285,10 +285,6 @@ def _create_transformations(self, json_transformations: list): if not units: continue - offset_units = self._find_attribute_in_list(CommonAttrs.OFFSET_UNITS, name, attributes) - if not offset_units: - continue - transformation_type = self._find_attribute_in_list( CommonAttrs.TRANSFORMATION_TYPE, name, @@ -308,6 +304,14 @@ def _create_transformations(self, json_transformations: list): offset_vector = self._find_attribute_in_list( CommonAttrs.OFFSET, name, attributes, [0.0, 0.0, 0.0] ) + + offset_units = self._find_attribute_in_list(CommonAttrs.OFFSET_UNITS, name, attributes) + if not offset_units: + if offset_vector is [0.0, 0.0, 0.0]: + continue + else: + offset_units = "" + # This attribute is allowed to be missing, missing is equivalent to the value "." which means # depends on origin (end of dependency chain) depends_on = _find_attribute_from_list_or_dict( From 8f4b1650ec618404b26fdb9940d2c2eff1fccaa1 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 19:52:06 +0100 Subject: [PATCH 33/39] fix for exporting offset only if present --- nexus_constructor/model/component.py | 7 +++---- nexus_constructor/model/transformation.py | 8 +++++--- nexus_constructor/transformation_view.py | 6 ++++-- 3 files changed, 12 insertions(+), 9 deletions(-) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 055611156..b8df01107 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -300,11 +300,10 @@ def _create_and_add_transform( transform.transform_type = transformation_type transform.ui_value = angle_or_magnitude transform.units = units - transform.offset_units = offset_units + if offset_units != "": + transform.offset_units = offset_units transform.vector = vector - transform.offset_vector = ( - offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) - ) + transform.offset_vector = offset_vector# if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) transform.depends_on = depends_on transform.parent_component = self if target_pos: diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 9eb22d9f3..d31f5a26d 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -4,6 +4,7 @@ import numpy as np from PySide6.Qt3DCore import Qt3DCore from PySide6.QtGui import QMatrix4x4, QVector3D +from typing import Optional from nexus_constructor.common_attrs import ( CommonAttrs, @@ -77,9 +78,10 @@ def offset_vector(self) -> QVector3D: ) @offset_vector.setter - def offset_vector(self, new_vector: QVector3D): - vector_as_np_array = np.array([new_vector.x(), new_vector.y(), new_vector.z()]) - self.attributes.set_attribute_value(CommonAttrs.OFFSET, vector_as_np_array) + def offset_vector(self, new_vector: Optional[QVector3D]): + if new_vector: + vector_as_np_array = np.array([new_vector.x(), new_vector.y(), new_vector.z()]) + self.attributes.set_attribute_value(CommonAttrs.OFFSET, vector_as_np_array) @property def ui_value(self) -> float: diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 3fffd8ab3..929ba62a5 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -70,7 +70,8 @@ def _fill_in_existing_fields(self): self.transformation_frame.x_spinbox_offset.setValue(offset[0]) self.transformation_frame.y_spinbox_offset.setValue(offset[1]) self.transformation_frame.z_spinbox_offset.setValue(offset[2]) - self.transformation_frame.offset_units_line_edit.setText(self.transformation.offset_units) + if self.transformation.offset_units: + self.transformation_frame.offset_units_line_edit.setText(self.transformation.offset_units) self.update_depends_on_ui() def disable(self): @@ -121,7 +122,8 @@ def save_offset(self): self.transformation.offset_vector = QVector3D( *[spinbox.value() for spinbox in self.transformation_frame.offset_spinboxes] ) - self.transformation.offset_units = self.transformation_frame.offset_units + if self.transformation_frame.offset_units: + self.transformation.offset_units = self.transformation_frame.offset_units self.model.signals.transformation_changed.emit() def save_all_changes(self): From 6c2177345d8e181b29eb5eefe4e9abddf12f3183 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Tue, 24 Oct 2023 19:56:19 +0100 Subject: [PATCH 34/39] small test change since zero offset not saved --- ui_tests/test_ui_transformation_view.py | 1 - 1 file changed, 1 deletion(-) diff --git a/ui_tests/test_ui_transformation_view.py b/ui_tests/test_ui_transformation_view.py index d01dc086c..edc48abb0 100644 --- a/ui_tests/test_ui_transformation_view.py +++ b/ui_tests/test_ui_transformation_view.py @@ -113,7 +113,6 @@ def test_UI_GIVEN_a_translation_with_nonzero_offset_WHEN_setting_the_offset_to_z view.transformation_frame.offset_spinboxes[0].setValue(0) view.save_offset() - assert all(transform.attributes.get_attribute_value(CommonAttrs.OFFSET) == qvector3d_to_numpy_array(QVector3D(0, 0, 0))) assert view.transformation_frame.offset_spinboxes[0].value() == 0 From 97cc1f2078bc7a1405efcfc10ffc3ed3aab8dbad Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Wed, 25 Oct 2023 08:18:15 +0200 Subject: [PATCH 35/39] flake fix --- nexus_constructor/model/component.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 2e5b3cf7a..5fc11134e 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -303,7 +303,7 @@ def _create_and_add_transform( if offset_units != "": transform.offset_units = offset_units transform.vector = vector - transform.offset_vector = offset_vector# if offset_vector is not None else QVector3D(0.0, 0.0, 0.0) + transform.offset_vector = offset_vector transform.depends_on = depends_on transform.parent_component = self if target_pos: From a39b9cfe9be3961809a89cb5fae76ee586129525 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Wed, 25 Oct 2023 06:23:39 +0000 Subject: [PATCH 36/39] GO FORMAT YOURSELF (black) --- nexus_constructor/json/transformation_reader.py | 4 +++- nexus_constructor/model/transformation.py | 4 +++- nexus_constructor/transformation_view.py | 4 +++- tests/json/test_transformation_reader.py | 6 ++++-- 4 files changed, 13 insertions(+), 5 deletions(-) diff --git a/nexus_constructor/json/transformation_reader.py b/nexus_constructor/json/transformation_reader.py index 546f692f2..2d8a810f0 100644 --- a/nexus_constructor/json/transformation_reader.py +++ b/nexus_constructor/json/transformation_reader.py @@ -305,7 +305,9 @@ def _create_transformations(self, json_transformations: list): CommonAttrs.OFFSET, name, attributes, [0.0, 0.0, 0.0] ) - offset_units = self._find_attribute_in_list(CommonAttrs.OFFSET_UNITS, name, attributes) + offset_units = self._find_attribute_in_list( + CommonAttrs.OFFSET_UNITS, name, attributes + ) if not offset_units: if offset_vector is [0.0, 0.0, 0.0]: continue diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index d31f5a26d..35a9b304f 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -80,7 +80,9 @@ def offset_vector(self) -> QVector3D: @offset_vector.setter def offset_vector(self, new_vector: Optional[QVector3D]): if new_vector: - vector_as_np_array = np.array([new_vector.x(), new_vector.y(), new_vector.z()]) + vector_as_np_array = np.array( + [new_vector.x(), new_vector.y(), new_vector.z()] + ) self.attributes.set_attribute_value(CommonAttrs.OFFSET, vector_as_np_array) @property diff --git a/nexus_constructor/transformation_view.py b/nexus_constructor/transformation_view.py index 929ba62a5..dd7bb2d52 100644 --- a/nexus_constructor/transformation_view.py +++ b/nexus_constructor/transformation_view.py @@ -71,7 +71,9 @@ def _fill_in_existing_fields(self): self.transformation_frame.y_spinbox_offset.setValue(offset[1]) self.transformation_frame.z_spinbox_offset.setValue(offset[2]) if self.transformation.offset_units: - self.transformation_frame.offset_units_line_edit.setText(self.transformation.offset_units) + self.transformation_frame.offset_units_line_edit.setText( + self.transformation.offset_units + ) self.update_depends_on_ui() def disable(self): diff --git a/tests/json/test_transformation_reader.py b/tests/json/test_transformation_reader.py index b39e538e0..ea3d033e3 100644 --- a/tests/json/test_transformation_reader.py +++ b/tests/json/test_transformation_reader.py @@ -337,7 +337,9 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE 5.0, 6.0, ] - transformation_json["children"][0]["attributes"][2]["offset_units"] = offset_units = "mm" + transformation_json["children"][0]["attributes"][2][ + "offset_units" + ] = offset_units = "mm" depends_on = None values = _create_transformation_dataset(angle_or_magnitude, "double", name) @@ -352,7 +354,7 @@ def test_GIVEN_all_information_present_WHEN_attempting_to_create_translation_THE depends_on=depends_on, values=values, offset_vector=QVector3D(*offset_vector), - offset_units=offset_units + offset_units=offset_units, ) From e568035584bbd4f4f29e652df936f10c542ba5a8 Mon Sep 17 00:00:00 2001 From: cow-bot Date: Wed, 25 Oct 2023 06:25:01 +0000 Subject: [PATCH 37/39] Update NeXus HTML documentation --- nx-class-documentation/html/index.html | 2 +- nx-class-documentation/html/searchindex.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nx-class-documentation/html/index.html b/nx-class-documentation/html/index.html index 946ef0b42..1c0524cf4 100644 --- a/nx-class-documentation/html/index.html +++ b/nx-class-documentation/html/index.html @@ -109,7 +109,7 @@

User Manual and Reference Documentation

Publishing Information

-

This manual built Oct 24, 2023.

+

This manual built Oct 25, 2023.

See also

This document is available in these formats online:

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94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 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134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 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69, 94, 103, 104, 107, 115, 116, 147, 148, 152], "right": [0, 72, 73, 89, 90, 95, 116, 120, 122, 125, 127], "field": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 118, 121, 122, 127, 128, 133, 134, 137, 144, 145, 148, 151, 152, 154], "can": [0, 2, 4, 8, 9, 11, 14, 15, 16, 19, 21, 22, 23, 26, 29, 35, 37, 38, 46, 47, 48, 49, 50, 53, 57, 61, 62, 65, 68, 70, 72, 75, 76, 79, 82, 83, 84, 86, 88, 94, 95, 97, 114, 115, 116, 118, 120, 121, 122, 124, 125, 127, 129, 132, 133, 134, 137, 138, 140, 141, 143, 145, 147, 151, 152, 154, 155], "found": [0, 11, 48, 107, 114, 116, 132, 133, 134, 143, 147, 154], "after": [0, 2, 18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 119, 124, 127, 128, 130, 133, 138, 145, 148, 151, 154], "appropri": [0, 11, 19, 26, 48, 75, 89, 104, 114, 116, 120, 123, 127, 138, 143, 146, 147, 151, 152], "item": [0, 4, 11, 46, 48, 57, 60, 110, 115, 116, 120, 121, 122, 125, 127, 133, 138, 143, 144, 145, 151, 154], "case": [0, 4, 10, 11, 36, 38, 47, 49, 52, 62, 65, 72, 75, 82, 83, 89, 107, 109, 110, 114, 115, 116, 121, 122, 123, 127, 128, 132, 133, 134, 137, 138, 146, 147, 148], "both": [0, 4, 10, 14, 19, 48, 64, 65, 68, 73, 103, 104, 114, 115, 116, 123, 127, 129, 133, 137, 138, 143, 144, 145, 146, 148, 151, 152, 154, 155], "live": [0, 107, 116], "nxdetector": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 35, 43, 47, 50, 51, 55, 64, 72, 94, 97, 103, 104, 114, 116, 120, 121, 123, 126, 133, 147, 148, 151, 152], "choos": [0, 38, 116, 123, 125, 127, 128, 147], "probabl": [0, 60, 62], "least": [0, 4, 48, 53, 115, 116, 120, 121, 122, 127, 144, 147, 151], "normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 125, 128, 130, 133, 134, 138, 143, 148, 154], "intern": [0, 49, 62, 75, 109, 112, 113, 114, 116, 130, 133, 134, 138, 145, 152], "meet": [0, 53, 60, 112, 130, 136, 137, 144, 154], "domain": [0, 115, 133, 137, 154], "expert": [0, 151], "haggl": 0, "when": [0, 2, 4, 10, 11, 19, 47, 48, 49, 50, 51, 52, 53, 62, 65, 68, 75, 76, 81, 82, 86, 88, 89, 94, 107, 114, 115, 116, 120, 121, 122, 123, 127, 130, 133, 134, 137, 138, 142, 143, 145, 146, 147, 148, 152, 154], "peopl": [0, 127, 128, 130, 133, 151], "tend": 0, "everyth": [0, 69, 125, 143], "might": [0, 11, 48, 49, 60, 62, 94, 95, 107, 110, 114, 115, 116, 120, 121, 127, 133, 143, 147, 148, 152, 155], "come": [0, 55, 116], "test": [0, 118, 120, 134, 136, 138, 143, 147], "question": [0, 24, 111, 116, 131, 152, 153, 154], "common": [0, 4, 9, 11, 29, 36, 46, 49, 55, 57, 62, 65, 89, 112, 114, 115, 116, 120, 121, 127, 128, 130, 133, 134, 137, 144, 145, 147], "onli": [0, 11, 29, 46, 48, 49, 51, 52, 53, 57, 59, 60, 61, 72, 75, 81, 82, 83, 94, 95, 97, 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"NXmoderator": [[67, "nxmoderator"]], "NXmonitor": [[68, "nxmonitor"]], "NXmonochromator": [[69, "nxmonochromator"]], "NXnote": [[70, "nxnote"]], "NXobject": [[71, "nxobject"]], "NXoff_geometry": [[72, "nxoff-geometry"], [116, "nxoff-geometry"]], "NXorientation": [[73, "nxorientation"]], "NXparameters": [[74, "nxparameters"]], "NXpdb": [[75, "nxpdb"]], "NXpinhole": [[76, "nxpinhole"]], "NXpolarizer": [[77, "nxpolarizer"]], "NXpositioner": [[78, "nxpositioner"]], "NXprocess": [[79, "nxprocess"]], "NXreflections": [[80, "nxreflections"]], "NXroot": [[81, "nxroot"]], "NXsample": [[82, "nxsample"]], "NXsample_component": [[83, "nxsample-component"]], "NXsensor": [[84, "nxsensor"]], "NXshape": [[85, "nxshape"]], "NXslit": [[86, "nxslit"]], "NXsource": [[87, "nxsource"]], "NXsubentry": [[88, "nxsubentry"]], "NXtransformations": [[89, "nxtransformations"]], "NXtranslation": [[90, "nxtranslation"]], "NXuser": [[91, "nxuser"]], "NXvelocity_selector": [[92, "nxvelocity-selector"]], "NXxraylens": [[93, "nxxraylens"]], "Base Class Definitions": [[94, "base-class-definitions"]], "NXcontainer": [[95, "nxcontainer"]], "NXcsg": [[96, "nxcsg"]], "NXcxi_ptycho": [[97, "nxcxi-ptycho"]], "NXelectrostatic_kicker": [[98, "nxelectrostatic-kicker"]], "NXmagnetic_kicker": [[99, "nxmagnetic-kicker"]], "NXquadric": [[100, "nxquadric"]], "NXquadrupole_magnet": [[101, "nxquadrupole-magnet"]], "NXseparator": [[102, "nxseparator"]], "NXsnsevent": [[103, "nxsnsevent"]], "NXsnshisto": [[104, "nxsnshisto"]], "NXsolenoid_magnet": [[105, "nxsolenoid-magnet"]], "NXsolid_geometry": [[106, "nxsolid-geometry"]], "NXspecdata": [[107, "nxspecdata"]], "NXspin_rotator": [[108, "nxspin-rotator"]], "Contributed Definitions": [[109, "contributed-definitions"], [112, "contributed-definitions"]], "NeXus Class Definitions": [[110, "nexus-class-definitions"]], "Colophon": [[111, "colophon"]], "NeXus Community": [[112, "nexus-community"]], "NeXus Webpage": [[112, "nexus-webpage"]], "Other Ways NeXus Coordinates with the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional Data with Axis Data": [[114, "associating-multi-dimensional-data-with-axis-data"]], "Associating plottable data using attributes applied to the NXdata group": [[114, "associating-plottable-data-using-attributes-applied-to-the-nxdata-group"]], "Examples": [[114, "examples"]], "Associating plottable data by name using the axes attribute": [[114, "associating-plottable-data-by-name-using-the-axes-attribute"]], "Associating plottable data by dimension number using the axis attribute": [[114, "associating-plottable-data-by-dimension-number-using-the-axis-attribute"]], "Introduction to NeXus definitions": [[115, "introduction-to-nexus-definitions"]], "Overview of NeXus definitions": [[115, "overview-of-nexus-definitions"]], "Description": [[115, "description"], [115, "id1"]], "Symbols table": [[115, "symbols-table"]], "Annotated Structure": [[115, "annotated-structure"]], "Names (groups, fields, links, and attributes)": [[115, "names-groups-fields-links-and-attributes"]], "NeXus data type": 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Transformations": [[116, "coordinate-transformations"]], "Coordinate Transformation Field And Attributes": [[116, "coordinate-transformation-field-and-attributes"]], "Shape Descriptions": [[116, "shape-descriptions"]], "Detector Shape Descriptions": [[116, "detector-shape-descriptions"]], "Legacy Geometry Descriptions": [[116, "legacy-geometry-descriptions"]], "McStas and NXgeometry System": [[116, "mcstas-and-nxgeometry-system"]], "Simple (Spherical Polar) Coordinate System": [[116, "simple-spherical-polar-coordinate-system"]], "Rules and Underlying File Formats": [[116, "rules-and-underlying-file-formats"]], "About these docs": [[117, "about-these-docs"]], "Example NeXus programs using NAPI": [[118, "example-nexus-programs-using-napi"]], "NAPI Simple 2-D Write Example (C, F77, F90)": [[118, "napi-simple-2-d-write-example-c-f77-f90"]], "NAPI C Example: write simple NeXus file": [[118, "napi-c-example-write-simple-nexus-file"]], "NAPI F77 Example: write simple NeXus file": [[118, "napi-f77-example-write-simple-nexus-file"]], "NAPI F90 Example: write simple NeXus file": [[118, "napi-f90-example-write-simple-nexus-file"]], "NAPI Python Simple 3-D Write Example": [[118, "napi-python-simple-3-d-write-example"]], "NAPI Python Example: write simple NeXus file": [[118, "napi-python-example-write-simple-nexus-file"]], "View a NeXus HDF5 file using h5dump": [[118, "view-a-nexus-hdf5-file-using-h5dump"]], "NAPI Python Example: h5dump output of NeXus HDF5 file": [[118, "napi-python-example-h5dump-output-of-nexus-hdf5-file"]], "View a NeXus HDF5 file using punx tree": [[118, "view-a-nexus-hdf5-file-using-punx-tree"]], "NAPI Python Example: punx tree simple3D.h5 output of NeXus HDF5 file": [[118, "napi-python-example-punx-tree-simple3d-h5-output-of-nexus-hdf5-file"]], "Example NeXus C programs using native HDF5 commands": [[119, "example-nexus-c-programs-using-native-hdf5-commands"]], "Writing a simple NeXus file using native HDF5 commands in C": [[119, "writing-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "Reading a simple NeXus file using native HDF5 commands in C": [[119, "reading-a-simple-nexus-file-using-native-hdf5-commands-in-c"]], "EPICS Area Detector Examples": [[120, "epics-area-detector-examples"]], "HDF5 File Writing Plugin": [[120, "hdf5-file-writing-plugin"]], "configuration files": [[120, "configuration-files"]], "attributes.xml": [[120, "attributes-xml"]], "layout.xml": [[120, "layout-xml"]], "additional configuration": [[120, "additional-configuration"]], "Example view": [[120, "example-view"]], "Python code to store an image in a NeXus file": [[120, "python-code-to-store-an-image-in-a-nexus-file"]], "using the h5py package": [[120, "using-the-h5py-package"]], "using the nexusformat package": [[120, "using-the-nexusformat-package"]], "Visualization": [[120, "visualization"]], "Downloads": [[120, "downloads"], [126, "downloads"]], "Footnotes": [[120, "footnotes"]], "Python Examples using h5py": [[121, "python-examples-using-h5py"]], "Writing the simplest data using h5py": [[121, "writing-the-simplest-data-using-h5py"]], "Complete h5py example writing and reading a NeXus data file": [[121, "complete-h5py-example-writing-and-reading-a-nexus-data-file"]], "Writing the HDF5 file using h5py": [[121, "writing-the-hdf5-file-using-h5py"]], "Reading the HDF5 file using h5py": [[121, "reading-the-hdf5-file-using-h5py"]], "Finding the default plottable data": [[121, "finding-the-default-plottable-data"]], "Plotting the HDF5 file": [[121, "plotting-the-hdf5-file"]], "Links to Data in External HDF5 Files": [[121, "links-to-data-in-external-hdf5-files"]], "file: external_angles.hdf5": [[121, "file-external-angles-hdf5"]], "file: external_counts.hdf5": [[121, "file-external-counts-hdf5"]], "file: external_master.hdf5": [[121, "file-external-master-hdf5"]], "source code: externalExample.py": [[121, "source-code-externalexample-py"]], "downloads": [[121, "downloads"], [122, "downloads"], [123, "downloads"]], "h5py example writing the simplest NeXus data file": [[122, "h5py-example-writing-the-simplest-nexus-data-file"]], "h5py example writing a simple NeXus data file with links": [[123, "h5py-example-writing-a-simple-nexus-data-file-with-links"]], "Examples of writing and reading NeXus data files": [[124, "examples-of-writing-and-reading-nexus-data-files"]], "Code Examples in Various Languages": [[124, "code-examples-in-various-languages"]], "Code Examples that use the NeXus API (NAPI)": [[124, "code-examples-that-use-the-nexus-api-napi"]], "Code that reads NeXus data files": [[124, "code-that-reads-nexus-data-files"]], "Viewing 2-D Data from LRMECS": [[125, "viewing-2-d-data-from-lrmecs"]], "Visualize Using h5dump": [[125, "visualize-using-h5dump"]], "LRMECS lrcs3701 data: h5dump output": [[125, "lrmecs-lrcs3701-data-h5dump-output"]], "Visualize Using HDFview": [[125, "visualize-using-hdfview"]], "LRMECS lrcs3701 data: image": [[125, "lrmecs-lrcs3701-data-image"], [125, "id3"]], "Visualize Using IgorPro": [[125, "visualize-using-igorpro"]], "MATLAB Examples": [[126, "matlab-examples"]], "input.dat": [[126, "input-dat"]], "writing data": [[126, "writing-data"]], "reading data": [[126, "reading-data"]], "writing data file with links": [[126, "writing-data-file-with-links"]], "Frequently Asked Questions": [[127, "frequently-asked-questions"]], "Physical File format": [[128, "physical-file-format"]], "Choice of HDF as Underlying File Format": [[128, "choice-of-hdf-as-underlying-file-format"]], "Mapping NeXus into HDF": [[128, "mapping-nexus-into-hdf"]], "NeXus Repositories": [[129, "nexus-repositories"]], "Brief history of NeXus": [[130, "brief-history-of-nexus"]], "User Manual and Reference Documentation": [[131, "user-manual-and-reference-documentation"]], "Installation": [[132, "installation"], [143, "installation"]], "Precompiled Binary Installation": [[132, "precompiled-binary-installation"]], "Linux RPM Distribution Kits": [[132, "linux-rpm-distribution-kits"]], "Microsoft Windows Installation Kit": [[132, "microsoft-windows-installation-kit"]], "Mac OS X Installation Kit": [[132, "mac-os-x-installation-kit"]], "Source Installation": [[132, "source-installation"]], "NeXus Source Code Distribution": [[132, "nexus-source-code-distribution"]], "Releases": [[132, "releases"]], "NeXus definitions": [[132, "nexus-definitions"]], "Release Notes": [[132, "release-notes"]], "Release Process": [[132, "release-process"]], "Versioning (Tags)": [[132, "versioning-tags"]], "NeXus Introduction": [[133, "nexus-introduction"]], "What is NeXus?": [[133, "what-is-nexus"]], "A Set of Design Principles": [[133, "a-set-of-design-principles"]], "Example of a NeXus File": [[133, "example-of-a-nexus-file"]], "Important Classes": [[133, "important-classes"]], "Simple Example": [[133, "simple-example"]], "A Set of Data Storage Objects": [[133, "a-set-of-data-storage-objects"]], "A Set of Subroutines": [[133, "a-set-of-subroutines"]], "Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, "napi-fortran-77-interface"]], "NAPI Fortran 90 Interface": [[141, "napi-fortran-90-interface"]], "NAPI IDL Interface": [[142, "napi-idl-interface"]], "NAPI Java Interface": [[143, "napi-java-interface"]], "Acknowledgement": [[143, "acknowledgement"]], "Requirements": [[143, "requirements"]], "Installation under Windows": [[143, "installation-under-windows"]], "Installation under Unix": [[143, "installation-under-unix"]], "Running Programs with the NeXus API for Java": [[143, "running-programs-with-the-nexus-api-for-java"]], "Locating the shared libraries": [[143, "locating-the-shared-libraries"]], "Locating jnexus.jar": [[143, "locating-jnexus-jar"]], "Programming with the NeXus API for Java": [[143, "programming-with-the-nexus-api-for-java"]], "Data Writing and Reading": [[143, "data-writing-and-reading"]], "Inquiry Routines": [[143, "inquiry-routines"]], "Known Problems": [[143, "known-problems"]], "On-line Documentation": [[143, "on-line-documentation"]], "NIAC: The NeXus International Advisory Committee": [[144, "niac-the-nexus-international-advisory-committee"]], "NXDL: The NeXus Definition Language": [[145, "nxdl-the-nexus-definition-language"]], "Introduction": [[145, "introduction"]], "Writing references and anchors in the documentation.": [[145, null]], "NXDL Field Types and Units": [[146, "nxdl-field-types-and-units"]], "Field Types allowed in NXDL specifications": [[146, "field-types-allowed-in-nxdl-specifications"]], "Unit Categories allowed in NXDL specifications": [[146, "unit-categories-allowed-in-nxdl-specifications"]], "NXDL Elements and Field Types": [[147, "nxdl-elements-and-field-types"]], "NXDL Elements": [[147, "nxdl-elements"]], "attribute": [[147, "attribute"], [147, "id24"]], "choice": [[147, "choice"]], "definition": [[147, "definition"], [147, "nxdl-data-type-definition"]], "dimensions": [[147, "dimensions"], [147, "id12"], [147, "id25"]], "doc": [[147, "doc"], [147, "id13"], [147, "id19"], [147, "id21"], [147, "id35"], [147, 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"ignoreextrafields"]], "@ignoreExtraGroups": [[147, "ignoreextragroups"]], "@restricts": [[147, "restricts"]], "@svnid": [[147, "svnid"]], "Elements of definitionType": [[147, "elements-of-definitiontype"]], "Groups under definitionType": [[147, "groups-under-definitiontype"]], "definitionTypeAttr": [[147, "definitiontypeattr"]], "dimensionsType": [[147, "dimensionstype"]], "Attributes of dimensionsType": [[147, "attributes-of-dimensionstype"]], "@rank": [[147, "rank"]], "Elements of dimensionsType": [[147, "elements-of-dimensionstype"]], "dim": [[147, "dim"]], "@incr": [[147, "incr"]], "@index": [[147, "index"]], "@ref": [[147, "ref"]], "@refindex": [[147, "refindex"]], "@required": [[147, "required"]], "@value": [[147, "value"], [147, "id20"]], "docType": [[147, "doctype"]], "enumerationType": [[147, "enumerationtype"]], "Elements of enumerationType": [[147, "elements-of-enumerationtype"]], "item": [[147, "item"]], "fieldType": [[147, "fieldtype"]], "@axes": [[147, "axes"]], "@axis": [[147, "axis"]], "@data_offset": [[147, "data-offset"]], "@interpretation": [[147, "interpretation"]], "@long_name": [[147, "long-name"]], "@maxOccurs": [[147, "maxoccurs"], [147, "id29"]], "@minOccurs": [[147, "minoccurs"], [147, "id30"]], "@nameType": [[147, "nametype"]], "@primary": [[147, "primary"]], "@recommended": [[147, "recommended"], [147, "id33"]], "@signal": [[147, "signal"]], "@stride": [[147, "stride"]], "@units": [[147, "units"]], "choiceType": [[147, "choicetype"]], "Attributes of choiceType": [[147, "attributes-of-choicetype"]], "Elements of choiceType": [[147, "elements-of-choicetype"]], "groupType": [[147, "grouptype"]], "Attributes of groupType": [[147, "attributes-of-grouptype"]], "linkType": [[147, "linktype"]], "@napimount": [[147, "napimount"]], "@target": [[147, "target"]], "symbolsType": [[147, "symbolstype"]], "Elements of symbolsType": [[147, "elements-of-symbolstype"]], "symbol": [[147, "symbol"]], "basicComponent": [[147, "basiccomponent"]], "Attributes of 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133, 134, 136, 137, 138, 141, 145, 146, 147, 151, 152, 154, 155], "exist": [0, 4, 16, 48, 53, 62, 81, 88, 107, 114, 116, 121, 123, 126, 137, 138, 147, 154], "fiction": 0, "collim": [0, 4, 14, 15, 45, 64, 94, 133], "monochrom": [0, 3, 6, 12, 14, 19, 20, 27, 29, 46, 61, 64, 69, 94, 116, 147, 151, 152], "illumin": 0, "sampl": [0, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 38, 39, 46, 49, 53, 60, 64, 68, 75, 82, 83, 84, 87, 88, 89, 90, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 134, 143, 147, 148, 151, 152], "neutron": [0, 1, 2, 4, 8, 10, 11, 12, 14, 15, 18, 20, 21, 24, 25, 26, 29, 36, 39, 47, 52, 53, 55, 58, 62, 67, 68, 87, 92, 94, 103, 104, 109, 112, 116, 127, 128, 130, 133, 134, 136, 137, 144, 145, 146, 152, 154], "select": [0, 3, 5, 11, 48, 56, 69, 84, 104, 114, 115, 125, 137, 147, 148, 151, 152], "wavelength": [0, 4, 6, 10, 11, 12, 14, 29, 32, 39, 46, 49, 52, 56, 57, 62, 63, 66, 68, 69, 82, 83, 87, 92, 94, 95, 103, 104, 116, 127, 133, 146, 147, 148], "diffract": [0, 10, 46, 61, 69, 80, 94, 107, 116, 151], "beam": [0, 4, 10, 11, 14, 15, 19, 24, 25, 27, 32, 34, 35, 36, 38, 39, 40, 41, 42, 44, 46, 49, 52, 53, 56, 57, 60, 61, 62, 63, 64, 68, 76, 82, 84, 87, 88, 92, 93, 94, 95, 97, 107, 114, 116, 121, 152], "collect": [0, 2, 4, 11, 14, 49, 53, 64, 84, 88, 89, 94, 95, 103, 104, 107, 116, 120, 121, 151, 152, 154], "larg": [0, 116, 127, 128, 147, 152, 154], "banana": 0, "shape": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38, 40, 45, 46, 47, 48, 49, 52, 60, 61, 62, 66, 67, 72, 85, 87, 94, 95, 97, 103, 104, 114, 115, 147], "posit": [0, 4, 10, 11, 14, 15, 18, 19, 21, 22, 23, 24, 35, 37, 38, 40, 41, 42, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 76, 77, 78, 80, 82, 84, 86, 87, 88, 89, 90, 92, 93, 95, 98, 99, 101, 102, 103, 104, 105, 108, 114, 116, 123, 138, 146, 147, 151, 152], "sensit": [0, 10, 121], "detector": [0, 4, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 29, 30, 31, 33, 34, 35, 36, 40, 43, 47, 49, 50, 51, 53, 55, 64, 68, 72, 80, 82, 88, 89, 94, 97, 103, 104, 107, 115, 118, 121, 123, 124, 126, 133, 137, 147, 148, 152], "typic": [0, 4, 11, 19, 46, 49, 93, 94, 107, 115, 116, 133], "like": [0, 4, 10, 11, 16, 18, 39, 49, 54, 82, 83, 94, 114, 116, 119, 126, 127, 129, 133, 143, 146, 151, 152], "plot": [0, 4, 19, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 120, 123, 126, 127, 130, 133, 147, 148, 151, 152, 154], "from": [0, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 18, 19, 21, 22, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38, 39, 41, 46, 48, 49, 52, 53, 55, 57, 64, 68, 70, 74, 75, 80, 81, 82, 83, 87, 88, 89, 94, 95, 97, 98, 99, 101, 102, 103, 104, 105, 107, 108, 109, 110, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 126, 127, 130, 131, 132, 133, 134, 137, 138, 141, 142, 143, 145, 146, 147, 151, 152, 154, 155], "hyne": 0, "There": [0, 4, 24, 48, 55, 65, 88, 89, 97, 112, 114, 116, 120, 127, 130, 133, 134, 136, 145, 146, 148, 151, 154], "background": [0, 11, 49, 80, 133], "plu": [0, 18, 30, 31, 34, 35, 41], "quit": [0, 114, 121, 127, 130, 134, 145, 152], "number": [0, 3, 4, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 41, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 58, 62, 63, 72, 73, 79, 80, 81, 82, 83, 84, 87, 88, 91, 92, 93, 95, 97, 103, 104, 107, 112, 116, 122, 124, 127, 128, 130, 133, 138, 141, 143, 146, 147, 148, 151, 152], "peak": [0, 63, 80], "start": [0, 2, 3, 5, 6, 7, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 35, 49, 50, 52, 53, 55, 65, 68, 70, 72, 79, 88, 89, 97, 103, 104, 107, 110, 114, 116, 120, 121, 122, 125, 127, 130, 132, 134, 143, 147, 151, 154], "point": [0, 4, 11, 12, 16, 18, 19, 20, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 40, 41, 42, 45, 46, 47, 49, 51, 52, 56, 57, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 90, 92, 93, 97, 107, 114, 115, 116, 120, 121, 122, 123, 127, 137, 143, 146, 147, 148, 151], "empti": [0, 95, 120, 147], "basic": [0, 48, 114, 115, 116, 121, 127, 128, 130, 134, 137, 138, 143, 144, 147, 151, 154], "document": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 111, 113, 114, 115, 116, 124, 125, 126, 130, 132, 133, 134, 137, 138, 139, 144, 147, 148, 151, 154, 155], "next": [0, 51, 114, 116, 118, 120, 121, 122, 123, 125, 127, 134, 141, 151], "figur": [0, 4, 61, 66, 95, 107, 110, 116, 121, 122, 123, 125, 126, 147, 151], "order": [0, 11, 19, 24, 25, 30, 34, 46, 48, 49, 51, 55, 57, 61, 65, 70, 72, 79, 82, 83, 95, 100, 112, 115, 116, 118, 119, 121, 137, 138, 141, 143, 147, 151], "arriv": [0, 65, 130], "follow": [0, 4, 11, 16, 24, 46, 49, 57, 75, 76, 80, 82, 83, 86, 89, 95, 114, 115, 116, 118, 121, 122, 123, 125, 127, 133, 134, 138, 141, 142, 143, 144, 146, 147, 148, 151], "requir": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 46, 47, 48, 49, 53, 75, 89, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 110, 114, 115, 116, 122, 126, 127, 132, 133, 137, 138, 145, 146, 151, 152, 155], "each": [0, 3, 4, 11, 12, 13, 14, 15, 16, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 34, 35, 36, 37, 39, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 61, 62, 64, 66, 72, 75, 82, 83, 88, 89, 94, 95, 97, 107, 109, 110, 114, 115, 116, 118, 119, 120, 121, 122, 124, 132, 133, 134, 137, 141, 143, 146, 147, 148, 151, 152, 154], "compon": [0, 4, 21, 22, 23, 37, 38, 39, 40, 41, 42, 45, 46, 47, 49, 51, 52, 53, 56, 57, 58, 59, 60, 61, 62, 63, 64, 66, 67, 68, 69, 72, 73, 75, 76, 77, 78, 80, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 96, 110, 114, 116, 122, 128, 133, 137, 138, 145, 147, 151], "group": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 118, 119, 120, 121, 122, 123, 125, 126, 127, 128, 130, 133, 134, 137, 138, 143, 144, 145, 148, 154], "add": [0, 4, 114, 116, 120, 121, 123, 126, 133, 134, 143, 146, 147], "nxinstrument": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 36, 39, 43, 53, 88, 89, 94, 97, 103, 104, 107, 110, 114, 116, 120, 121, 123, 126, 127, 133, 134, 147, 148, 151, 152], "what": [0, 4, 26, 62, 114, 120, 122, 127, 147, 148, 151], "go": [0, 55, 116, 119, 127, 132, 136, 145, 147], "while": [0, 4, 19, 48, 64, 110, 114, 115, 121, 125, 127, 130, 137, 143, 147, 148, 151, 154], "option": [0, 4, 5, 10, 11, 19, 24, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 115, 116, 118, 120, 122, 125, 127, 132, 142, 143, 145, 151, 154], "urg": 0, "strongli": [0, 11, 53, 127, 137], "provid": [0, 2, 4, 11, 19, 21, 22, 23, 36, 37, 38, 42, 48, 49, 50, 53, 75, 88, 93, 96, 109, 112, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 130, 133, 134, 137, 138, 139, 145, 147, 151, 154], "support": [0, 11, 30, 34, 59, 81, 114, 116, 120, 121, 122, 123, 124, 126, 127, 128, 130, 134, 137, 138, 147, 151, 152, 154], "default": [0, 4, 11, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 107, 114, 115, 116, 120, 123, 125, 126, 127, 130, 132, 133, 137, 143, 146, 147, 148, 151, 152, 154], "nxsampl": [0, 2, 3, 4, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 39, 53, 75, 83, 88, 94, 97, 103, 104, 116, 127, 133, 134, 148, 151, 152], "nxmonitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 53, 88, 94, 97, 103, 104, 107, 127, 133, 134, 151], "structur": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 137, 138, 144, 145, 147, 148, 152, 154, 155], "entri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 45, 48, 49, 53, 55, 62, 65, 66, 68, 72, 75, 81, 82, 86, 88, 89, 91, 97, 103, 104, 107, 110, 114, 116, 118, 120, 121, 122, 123, 126, 127, 128, 133, 143, 147, 148, 151, 152], "nxentri": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 48, 75, 81, 88, 94, 95, 97, 103, 104, 107, 110, 114, 115, 116, 118, 119, 120, 121, 122, 123, 126, 127, 128, 130, 133, 134, 143, 147, 148, 152], "now": [0, 24, 48, 60, 73, 94, 114, 116, 120, 121, 128, 130, 132, 136, 154], "variou": [0, 4, 8, 64, 82, 83, 107, 116, 122, 127, 130, 131, 137, 138, 145, 147, 151, 154], "shell": [0, 143], "draw": [0, 4, 116, 137], "identifi": [0, 2, 4, 11, 48, 49, 50, 53, 61, 88, 91, 103, 104, 114, 115, 116, 120, 121, 123, 127, 128, 130, 133, 134, 138, 147, 148, 154], "all": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 112, 114, 115, 116, 119, 121, 122, 124, 126, 127, 130, 132, 133, 134, 136, 137, 138, 143, 144, 145, 147, 151, 154], "etc": [0, 2, 8, 11, 39, 43, 49, 50, 54, 68, 84, 91, 95, 107, 114, 116, 127, 133, 151, 152], "valu": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 38, 39, 40, 42, 45, 46, 48, 49, 51, 52, 53, 57, 58, 59, 61, 62, 63, 65, 66, 67, 68, 73, 75, 77, 78, 80, 81, 82, 83, 84, 85, 87, 88, 89, 93, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 114, 115, 116, 118, 119, 120, 121, 126, 127, 128, 133, 137, 141, 143, 146, 148, 152, 154], "aim": [0, 110], "experi": [0, 2, 4, 6, 11, 14, 15, 24, 26, 27, 36, 40, 49, 53, 80, 87, 88, 94, 95, 97, 103, 104, 107, 109, 114, 116, 127, 133, 137, 151, 152, 154], "good": [0, 4, 11, 48, 114, 120, 122, 130, 137, 143, 151, 154], "possibl": [0, 4, 18, 49, 53, 60, 89, 110, 114, 115, 116, 122, 127, 133, 137, 147, 151], "strive": [0, 116, 130, 151], "captur": [0, 116, 151], "much": [0, 116, 127, 133, 136, 137, 138, 143, 151], "practic": [0, 4, 24, 52, 53, 60, 116, 137, 143, 147, 151], "With": [0, 4, 49, 55, 88, 114, 122, 134, 137, 145], "manual": [0, 43, 111, 113, 115, 116, 118, 120, 123, 124, 125, 134, 139, 147, 152, 154], "base": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 27, 29, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 97, 104, 107, 109, 110, 112, 114, 115, 121, 122, 127, 129, 130, 132, 133, 134, 137, 145, 146, 147, 148, 152, 154, 155], "class": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 112, 114, 115, 121, 122, 127, 128, 129, 130, 131, 134, 138, 143, 144, 145, 146, 147, 149, 151, 152], "find": [0, 48, 53, 88, 110, 116, 120, 127, 133, 137, 138, 143, 148, 151], "your": [0, 20, 29, 110, 114, 116, 120, 124, 127, 132, 133, 143, 151, 152, 154], "suitabl": [0, 14, 107, 147, 151], "togeth": [0, 4, 11, 44, 49, 50, 55, 73, 90, 114, 116, 121, 133, 147, 151], "under": [0, 11, 49, 52, 65, 80, 95, 109, 113, 115, 116, 125, 126, 132, 154, 155], "Then": [0, 110, 114, 116, 121, 134, 143, 147, 151, 152], "match": [0, 48, 52, 55, 65, 72, 114, 143, 147], "them": [0, 24, 95, 107, 112, 114, 120, 121, 129, 130, 133, 138, 143, 151], "wish": [0, 120, 123, 128, 136, 145, 146, 152], "mai": [0, 2, 4, 11, 36, 42, 46, 48, 50, 52, 53, 55, 57, 62, 68, 75, 78, 82, 83, 84, 85, 89, 95, 107, 110, 111, 114, 115, 116, 118, 120, 121, 122, 123, 125, 127, 133, 134, 141, 143, 144, 145, 147, 148, 151, 152, 154, 155], "d": [0, 4, 14, 15, 36, 46, 48, 49, 80, 107, 114, 116, 120, 121, 122, 124, 126, 128, 134, 137, 147, 148, 151, 152], "reflect": [0, 46, 62, 66, 77, 80, 94, 107, 114, 127, 147], "type": [0, 2, 3, 4, 6, 8, 10, 11, 12, 14, 15, 16, 18, 19, 24, 25, 26, 27, 29, 38, 42, 45, 46, 49, 50, 51, 52, 53, 54, 56, 57, 58, 63, 66, 67, 68, 70, 75, 77, 80, 82, 84, 85, 87, 88, 89, 92, 93, 97, 100, 103, 104, 116, 118, 120, 121, 122, 127, 132, 133, 134, 137, 141, 143, 145, 148, 151, 154], "its": [0, 2, 4, 11, 16, 36, 37, 38, 39, 40, 41, 42, 45, 46, 48, 49, 50, 52, 53, 56, 57, 58, 59, 61, 62, 63, 64, 66, 67, 68, 69, 76, 77, 78, 82, 84, 85, 86, 87, 88, 89, 92, 93, 114, 115, 116, 120, 123, 127, 128, 133, 138, 144, 147, 151, 154, 155], "angl": [0, 3, 4, 7, 9, 10, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 30, 31, 34, 35, 36, 42, 45, 46, 48, 49, 52, 57, 61, 62, 66, 73, 80, 82, 85, 89, 92, 95, 103, 104, 107, 114, 116, 118, 121, 123, 127, 133, 145, 146, 147], "toward": [0, 7, 37, 38, 40, 49, 67, 76], "incom": [0, 27, 28, 36], "tell": [0, 120, 122, 125], "nxcrystal": [0, 10, 20, 64, 69, 94, 103, 104, 107, 115, 116, 147, 148, 152], "right": [0, 72, 73, 89, 90, 95, 116, 120, 122, 125, 127], "field": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 118, 121, 122, 127, 128, 133, 134, 137, 144, 145, 148, 151, 152, 154], "can": [0, 2, 4, 8, 9, 11, 14, 15, 16, 19, 21, 22, 23, 26, 29, 35, 37, 38, 46, 47, 48, 49, 50, 53, 57, 61, 62, 65, 68, 70, 72, 75, 76, 79, 82, 83, 84, 86, 88, 94, 95, 97, 114, 115, 116, 118, 120, 121, 122, 124, 125, 127, 129, 132, 133, 134, 137, 138, 140, 141, 143, 145, 147, 151, 152, 154, 155], "found": [0, 11, 48, 107, 114, 116, 132, 133, 134, 143, 147, 154], "after": [0, 2, 18, 48, 49, 64, 85, 103, 104, 107, 115, 119, 125, 127, 130, 133, 141, 142, 151], "ad": [0, 4, 48, 70, 89, 110, 114, 115, 116, 118, 121, 127, 128, 134, 147, 152], "d_space": [0, 46], "rotation_angl": [0, 10, 12, 13, 14, 15, 16, 17, 19, 20, 24, 25, 30, 31, 34, 35, 82, 116, 151], "even": [0, 11, 62, 66, 114, 116, 120, 127, 133, 134, 138, 143, 145, 151, 154, 155], "whole": [0, 11, 47, 49, 72, 114, 116, 151], "miss": [0, 4, 48, 65, 114], "do": [0, 11, 48, 53, 61, 89, 114, 115, 116, 120, 125, 127, 128, 132, 133, 138, 143, 147, 151, 154], "despair": 0, "contact": [0, 91, 94, 111, 127, 132], "suggest": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 34, 35, 44, 48, 62, 75, 84, 91, 95, 97, 103, 104, 114, 115, 116, 121, 137, 147, 152], "give": [0, 11, 16, 21, 22, 23, 29, 41, 49, 51, 53, 75, 88, 107, 114, 116, 121, 133, 143], "littl": [0, 114, 116, 143, 152], "check": [0, 49, 119, 120, 121, 126, 134, 138, 143, 145, 147, 155], "duplic": [0, 36, 97, 110, 114, 123, 127], "suffici": [0, 95, 114, 127, 144], "proce": [0, 114, 143], "enhanc": [0, 116], "A": [0, 4, 11, 36, 37, 38, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 61, 62, 66, 67, 68, 69, 74, 75, 76, 77, 78, 82, 83, 84, 86, 88, 89, 92, 94, 95, 109, 114, 115, 116, 118, 120, 121, 123, 126, 127, 128, 130, 131, 132, 137, 143, 146, 147, 148, 151, 154], "elabor": 0, "suppos": [0, 76, 86, 114, 116, 120, 127, 143], "contain": [0, 4, 11, 16, 19, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 97, 107, 109, 114, 115, 116, 118, 121, 122, 124, 125, 127, 132, 133, 134, 136, 137, 138, 145, 147, 148, 151, 152, 154], "put": [0, 97, 120, 121, 127, 138, 141, 143, 151], "up": [0, 3, 48, 78, 85, 87, 90, 93, 95, 96, 106, 114, 116, 124, 125, 127, 133, 138, 147, 151, 152], "quick": [0, 121, 151], "count": [0, 4, 6, 9, 10, 11, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 27, 29, 46, 48, 49, 57, 68, 82, 83, 95, 103, 104, 107, 114, 116, 118, 119, 120, 121, 122, 123, 126, 133, 134, 151], "versu": [0, 14, 15, 27, 28, 36, 46], "two": [0, 4, 9, 11, 30, 31, 35, 48, 49, 51, 65, 75, 88, 97, 107, 110, 114, 115, 116, 118, 120, 121, 125, 126, 127, 128, 130, 134, 138, 143, 144, 145, 147, 148, 151], "theta": [0, 4, 9, 30, 31, 35, 107, 116, 134], "polar_angl": [0, 7, 9, 10, 12, 13, 14, 15, 20, 21, 22, 23, 30, 31, 34, 35, 46, 49, 80, 103, 104, 114, 116, 118, 125, 134, 147, 151], "seen": [0, 49, 67, 87, 116, 154], "link": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 110, 114, 119, 124, 127, 128, 130, 133, 138, 145, 148, 151, 154], "appropri": [0, 11, 19, 26, 48, 75, 89, 104, 114, 116, 120, 123, 127, 138, 143, 146, 147, 151, 152], "item": [0, 4, 11, 46, 48, 57, 60, 110, 115, 116, 120, 121, 122, 125, 127, 133, 138, 143, 144, 145, 151, 154], "case": [0, 4, 10, 11, 36, 38, 47, 49, 52, 62, 65, 72, 75, 82, 83, 89, 107, 109, 110, 114, 115, 116, 121, 122, 123, 127, 128, 132, 133, 134, 137, 138, 146, 147, 148], "both": [0, 4, 10, 14, 19, 48, 64, 65, 68, 73, 103, 104, 114, 115, 116, 123, 127, 129, 133, 137, 138, 143, 144, 145, 146, 148, 151, 152, 154, 155], "live": [0, 107, 116], "nxdetector": [0, 3, 4, 6, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 27, 29, 30, 31, 33, 34, 35, 43, 47, 50, 51, 55, 64, 72, 94, 97, 103, 104, 114, 116, 120, 121, 123, 126, 133, 147, 148, 151, 152], "choos": [0, 38, 116, 123, 125, 127, 128, 147], "probabl": [0, 60, 62], "least": [0, 4, 48, 53, 115, 116, 120, 121, 122, 127, 144, 147, 151], "normal": [0, 3, 9, 11, 29, 34, 49, 72, 89, 107, 114, 116, 119, 123, 129, 147, 151, 152], "experiment": [0, 11, 95, 112, 114, 116, 133, 137, 151], "run": [0, 2, 4, 22, 53, 65, 84, 88, 103, 104, 122, 126, 127, 132, 133, 138, 151, 154], "against": [0, 48, 65, 107, 114, 116, 130, 147, 151, 152, 154, 155], "other": [0, 4, 11, 19, 21, 22, 23, 46, 47, 48, 49, 52, 53, 57, 59, 65, 70, 75, 81, 82, 83, 88, 90, 94, 95, 107, 109, 110, 114, 115, 116, 120, 121, 126, 127, 128, 131, 133, 134, 136, 137, 138, 144, 145, 147, 151, 152, 154], "necessari": [0, 4, 9, 14, 15, 29, 48, 49, 62, 69, 95, 114, 115, 116, 121, 123, 133, 134, 137, 138, 141, 145, 147], "know": [0, 11, 49, 51, 82, 83, 95, 120, 123, 133, 138], "condit": [0, 8, 54, 84, 94, 116, 137], "especi": [0, 39, 49, 116, 143, 151], "monitor": [0, 6, 9, 10, 12, 13, 14, 15, 16, 20, 21, 22, 23, 24, 25, 27, 29, 52, 53, 57, 68, 82, 84, 88, 94, 97, 103, 104, 107, 116, 127, 133, 151], "convent": [0, 2, 3, 9, 14, 15, 27, 28, 29, 46, 57, 80, 82, 83, 95, 97, 107, 116, 123, 154], "control": [0, 9, 11, 12, 13, 14, 15, 19, 24, 25, 29, 36, 54, 78, 84, 94, 107, 114, 116, 120, 147, 151, 154], "level": [0, 11, 50, 53, 97, 110, 114, 115, 116, 118, 121, 122, 127, 130, 133, 137, 143, 147, 148, 151, 154], "addit": [0, 4, 11, 37, 48, 49, 53, 54, 60, 70, 82, 88, 89, 94, 110, 114, 115, 116, 121, 122, 123, 126, 130, 133, 136, 145, 146, 147, 152, 154], "within": [0, 4, 11, 16, 19, 39, 46, 57, 82, 83, 88, 89, 95, 114, 115, 116, 118, 120, 123, 127, 133, 134, 137, 138, 142, 145, 147], "thei": [0, 11, 49, 55, 62, 65, 68, 84, 91, 95, 107, 114, 116, 126, 127, 133, 137, 138, 142, 143, 145, 146, 147, 151, 152, 154, 155], "out": [0, 4, 34, 38, 40, 48, 53, 55, 57, 88, 103, 104, 107, 114, 116, 119, 121, 122, 126, 127, 132, 143, 146, 147, 148, 151, 154], "titl": [0, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 48, 49, 53, 70, 82, 87, 88, 97, 103, 104, 107, 114, 116, 121, 125, 131, 133, 134, 137, 145, 146, 148, 151], "user": [0, 2, 4, 11, 21, 22, 23, 49, 53, 82, 88, 89, 91, 94, 103, 104, 107, 110, 115, 116, 118, 123, 125, 127, 128, 130, 133, 134, 137, 138, 144, 147, 151, 154, 155], "time": [0, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 38, 39, 46, 48, 49, 52, 53, 55, 57, 65, 68, 78, 79, 81, 82, 84, 87, 88, 94, 95, 97, 98, 99, 103, 104, 107, 115, 116, 118, 120, 121, 122, 123, 130, 133, 134, 137, 143, 146, 147, 151, 154, 155], "desir": [0, 76, 86, 114, 116, 121], "sourc": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 111, 115, 116, 120, 126, 127, 129, 131, 134, 135, 136, 137, 142, 143, 145, 146, 147, 148, 151, 154], "anoth": [0, 4, 19, 21, 22, 23, 48, 53, 73, 75, 88, 114, 116, 120, 121, 123, 125, 127, 130, 134, 137, 138, 143, 145, 146, 147, 151, 152, 154], "descript": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 114, 120, 121, 122, 123, 126, 130, 134, 137, 138, 141, 147, 148, 152, 154], "verifi": 0, "conform": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 53, 88, 97, 107, 115, 116, 118, 121, 144, 145, 147, 148, 155], "encapsul": [0, 133], "similar": [0, 4, 68, 120, 121, 133, 134, 138, 147, 151], "one": [0, 4, 11, 19, 24, 29, 48, 49, 51, 52, 53, 75, 77, 78, 81, 82, 87, 88, 89, 91, 107, 114, 115, 116, 120, 121, 122, 124, 127, 130, 133, 138, 143, 146, 147, 148, 151, 152, 154], "abov": [0, 4, 11, 16, 49, 82, 97, 110, 114, 115, 116, 118, 120, 121, 122, 125, 132, 133, 134, 137, 148, 151, 154], "One": [0, 4, 20, 48, 82, 83, 89, 94, 96, 114, 116, 120, 121, 122, 123, 125, 130, 132, 143, 147], "easi": [0, 116, 120, 127, 130, 133, 134, 152, 154], "wai": [0, 11, 16, 18, 19, 24, 48, 64, 82, 114, 116, 121, 125, 126, 127, 128, 131, 133, 134, 137, 143, 145, 147, 151, 155], "work": [0, 11, 42, 49, 107, 114, 116, 120, 121, 127, 130, 132, 133, 134, 137, 138, 143, 144, 147, 154, 155], "through": [0, 10, 11, 19, 38, 48, 51, 52, 55, 62, 76, 82, 86, 89, 95, 112, 114, 116, 133, 134, 138, 143, 147, 152, 154], "along": [0, 4, 11, 19, 24, 29, 38, 51, 58, 60, 61, 62, 82, 84, 85, 89, 92, 114, 116, 120, 144, 151], "kei": [0, 24, 53, 88, 107, 120, 121, 143], "decis": [0, 53, 138], "influenc": [0, 11, 49], "our": [0, 121, 123, 125, 138, 152], "particular": [0, 4, 48, 55, 62, 75, 89, 110, 114, 115, 116, 133, 138, 144, 145, 146, 147, 151], "choic": [0, 4, 19, 46, 57, 81, 114, 116, 120, 127, 143, 145], "metadata": [0, 4, 107, 114, 115, 120, 121, 126, 127, 145, 154, 155], "organ": [0, 53, 88, 129, 133, 137, 144, 147, 154], "so": [0, 4, 24, 28, 30, 31, 34, 35, 53, 97, 114, 116, 127, 132, 133, 136, 137, 138, 141, 143, 146, 147, 151, 152, 154], "introductori": 0, "stuff": [0, 121], "u": [0, 1, 4, 9, 29, 107, 114, 116, 118, 121, 122, 123, 130, 143, 146, 151, 152], "defin": [0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 112, 114, 115, 116, 119, 120, 123, 127, 130, 133, 134, 138, 141, 143, 145, 146, 147, 152, 154], "ha": [0, 3, 4, 8, 10, 11, 17, 34, 49, 50, 52, 62, 65, 75, 81, 82, 89, 100, 107, 114, 115, 116, 120, 121, 122, 123, 125, 127, 130, 133, 134, 137, 138, 143, 147, 148, 151, 152, 154, 155], "commun": [0, 4, 109, 110, 116, 124, 127, 128, 130, 131, 132, 136, 144, 151, 154], "actual": [0, 4, 11, 14, 15, 35, 42, 48, 49, 53, 68, 88, 89, 95, 114, 115, 116, 118, 121, 123, 127, 132, 133, 146, 148, 152], "bit": [0, 11, 49, 80, 114, 120, 123, 125, 137, 143, 151], "thing": [0, 26, 49, 116, 119, 130, 145, 146, 151], "first": [0, 4, 8, 11, 16, 18, 25, 29, 46, 47, 48, 49, 52, 61, 72, 84, 86, 96, 107, 112, 114, 115, 116, 118, 120, 121, 123, 125, 126, 127, 130, 137, 143, 147, 151, 152, 154, 155], "part": [0, 11, 29, 36, 49, 62, 67, 95, 107, 114, 115, 118, 121, 128, 133, 134, 137, 140, 141, 143, 145, 147, 148, 151, 154], "guid": [0, 58, 62, 64, 114, 128, 133, 135, 147], "principl": [0, 115, 145], "guidanc": [0, 11, 121], "must": [0, 4, 11, 19, 26, 36, 46, 48, 49, 52, 57, 60, 72, 80, 82, 83, 88, 95, 97, 107, 110, 114, 115, 116, 120, 121, 127, 134, 137, 143, 147, 155], "analysi": [0, 3, 4, 11, 14, 15, 27, 28, 36, 43, 49, 53, 74, 79, 88, 94, 116, 120, 121, 122, 123, 125, 127, 130, 131, 133, 134, 145, 151], "Not": [0, 107, 109, 116, 123, 138], "less": [0, 11, 49, 147], "Of": [0, 114, 121, 152], "cours": [0, 24, 25, 114, 121], "depend": [0, 4, 11, 37, 38, 40, 41, 42, 45, 46, 48, 49, 51, 52, 56, 57, 58, 59, 61, 62, 63, 66, 67, 68, 69, 76, 77, 78, 82, 83, 84, 86, 87, 89, 92, 93, 95, 97, 100, 107, 114, 116, 132, 137, 154, 155], "scienc": [0, 1, 112, 128, 133, 136, 137, 144, 154], "being": [0, 4, 19, 97, 114, 115, 116, 118, 122, 130, 137, 142, 147, 152, 154], "senior": 0, "scientist": [0, 112, 116, 133, 137, 145, 151, 152, 154, 155], "unsur": [0, 120], "perhap": [0, 11, 54, 64, 87, 120, 128, 152], "call": [0, 46, 62, 73, 88, 104, 114, 116, 118, 119, 121, 123, 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"NXcite": [[43, "nxcite"]], "NXcollection": [[44, "nxcollection"], [151, "nxcollection"]], "NXcollimator": [[45, "nxcollimator"]], "NXcrystal": [[46, "nxcrystal"]], "NXcylindrical_geometry": [[47, "nxcylindrical-geometry"], [116, "nxcylindrical-geometry"]], "NXdata": [[48, "nxdata"]], "NXdetector": [[49, "nxdetector"]], "NXdetector_group": [[50, "nxdetector-group"]], "NXdetector_module": [[51, "nxdetector-module"]], "NXdisk_chopper": [[52, "nxdisk-chopper"]], "NXentry": [[53, "nxentry"]], "NXenvironment": [[54, "nxenvironment"]], "NXevent_data": [[55, "nxevent-data"]], "NXfermi_chopper": [[56, "nxfermi-chopper"]], "NXfilter": [[57, "nxfilter"]], "NXflipper": [[58, "nxflipper"]], "NXfresnel_zone_plate": [[59, "nxfresnel-zone-plate"]], "NXgeometry": [[60, "nxgeometry"]], "NXgrating": [[61, "nxgrating"]], "NXguide": [[62, "nxguide"]], "NXinsertion_device": [[63, "nxinsertion-device"]], "NXinstrument": [[64, "nxinstrument"]], "NXlog": [[65, "nxlog"]], "NXmirror": [[66, "nxmirror"]], 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the Scientific Community": [[112, "other-ways-nexus-coordinates-with-the-scientific-community"]], "Copyright and Licenses": [[113, "copyright-and-licenses"]], "Rules for Storing Data Items in NeXus Files": [[114, "rules-for-storing-data-items-in-nexus-files"]], "Naming Conventions": [[114, "naming-conventions"]], "Variants": [[114, "variants"]], "Uncertainties or Errors": [[114, "uncertainties-or-errors"]], "NeXus Array Storage Order": [[114, "nexus-array-storage-order"]], "Non C Storage Order": [[114, "non-c-storage-order"]], "NeXus Data Types": [[114, "nexus-data-types"]], "NeXus dates and times": [[114, "nexus-dates-and-times"]], "NeXus Data Units": [[114, "nexus-data-units"]], "Storing Detectors": [[114, "storing-detectors"]], "Monitors are Special": [[114, "monitors-are-special"]], "Find the plottable data": [[114, "find-the-plottable-data"]], "Version 3": [[114, "version-3"]], "Version 2": [[114, "version-2"]], "Version 1": [[114, "version-1"]], "Associating Multi Dimensional 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"Scientific Community": [[133, "scientific-community"]], "NAPI: The NeXus Application Programming Interface": [[134, "napi-the-nexus-application-programming-interface"]], "How do I write a NeXus file?": [[134, "how-do-i-write-a-nexus-file"]], "How do I read a NeXus file?": [[134, "how-do-i-read-a-nexus-file"]], "How do I browse a NeXus file?": [[134, "how-do-i-browse-a-nexus-file"]], "NeXus Issue Reporting": [[135, "nexus-issue-reporting"]], "NeXus Code (NAPI, Library, and Applications)": [[135, "nexus-code-napi-library-and-applications"]], "NeXus Definitions (NXDL base classes and application definitions)": [[135, "nexus-definitions-nxdl-base-classes-and-application-definitions"]], "NeXus Mailing List": [[136, "nexus-mailing-list"]], "NeXus International Advisory Committee (NIAC) Mailing List": [[136, "nexus-international-advisory-committee-niac-mailing-list"]], "NeXus Video Conference Announcements": [[136, "nexus-video-conference-announcements"]], "NeXus Developers Mailing List (retired)": [[136, "nexus-developers-mailing-list-retired"]], "Motivations for the NeXus standard in the Scientific Community": [[137, "motivations-for-the-nexus-standard-in-the-scientific-community"]], "Simple plotting": [[137, "simple-plotting"]], "Unified format for reduction and analysis": [[137, "unified-format-for-reduction-and-analysis"]], "Defined dictionary of terms": [[137, "defined-dictionary-of-terms"]], "NAPI: NeXus Application Programmer Interface (frozen)": [[138, "napi-nexus-application-programmer-interface-frozen"]], "Status": [[138, "status"]], "Overview": [[138, "overview"]], "Core API": [[138, "core-api"]], "Utility API": [[138, "utility-api"]], "List of F90 Utility Routines": [[138, "list-of-f90-utility-routines"]], "Building Programs": [[138, "building-programs"]], "Reporting Bugs in the NeXus API": [[138, "reporting-bugs-in-the-nexus-api"]], "NAPI C and C++ Interface": [[139, "napi-c-and-c-interface"]], "NAPI Fortran 77 Interface": [[140, 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"hdfexplorer": [[154, "index-30"]], "hdfview": [[154, "index-31"]], "idl (data analysis software)": [[154, "index-19"]], "idl; axis2000": [[154, "index-33"]], "igor pro (data analysis software)": [[154, "index-20"]], "isaw (data analysis software)": [[154, "index-21"]], "igorpro; hdf5gateway": [[154, "index-34"]], "lamp (data analysis software)": [[154, "index-22"]], "mantid (data analysis software)": [[154, "index-23"]], "nxplot (utility)": [[154, "index-11"]], "nexpy (data analysis software)": [[154, "index-25"]], "opengenie (data analysis software)": [[154, "index-26"]], "pymca (data analysis software)": [[154, "index-27"]], "python; dials": [[154, "index-37"]], "python; mantis": [[154, "index-39"]], "python; sasview": [[154, "index-41"]], "python; h5py": [[154, "index-38"]], "python; nexusformat": [[154, "index-40"]], "cnxvalidate (utility)": [[154, "index-13"]], "conversion": [[154, "index-4"]], "data analysis software": [[154, "index-12"]], "ingestion": [[154, "index-6"]], "inspection": [[154, "index-5"]], "java; dawn": [[154, "index-35"]], "java; nxreader.zip": [[154, "index-36"]], "mixed; focus": [[154, "index-42"]], "mixed; zebra": [[154, "index-43"]], "nxbrowse (utility)": [[154, "index-3"]], "nxconvert (utility)": [[154, "index-4"]], "nxdir (utility)": [[154, "index-5"]], "nxingest (utility)": [[154, "index-6"]], "nxsummary": [[154, "index-9"]], "nxtranslate (utility)": [[154, "index-10"]], "programs": [[154, "index-1"]], "punx (utility)": [[154, "index-14"]], "software": [[154, "index-12"], [154, "index-2"]], "spec2nexus": [[154, "index-28"]], "tools": [[154, "index-29"]], "utilities": [[154, "index-0"]], "validate": [[154, "index-13"], [154, "index-14"]], "validation": [[154, "index-13"], [154, "index-14"], [155, "index-0"]], "nxvalidate": [[155, "index-2"]], "verification": [[155, "index-0"]]}}) \ No newline at end of file From a5e93cce1c298907ccde83df18e72dbb679c601d Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Wed, 25 Oct 2023 12:18:34 +0200 Subject: [PATCH 38/39] post-review commit --- nexus_constructor/model/component.py | 2 ++ nexus_constructor/model/transformation.py | 13 ++++++++++--- ui/transformation.py | 1 - ui_tests/test_ui_transformation_view.py | 6 +++--- 4 files changed, 15 insertions(+), 7 deletions(-) diff --git a/nexus_constructor/model/component.py b/nexus_constructor/model/component.py index 5fc11134e..680f154af 100644 --- a/nexus_constructor/model/component.py +++ b/nexus_constructor/model/component.py @@ -244,6 +244,7 @@ def add_rotation( ), target_pos: int = -1, offset_vector: Optional[QVector3D] = None, + offset_units: str = "" ) -> Transformation: """ Note, currently assumes angle is in degrees @@ -265,6 +266,7 @@ def add_rotation( values, target_pos, offset_vector if offset_vector is not None else QVector3D(0.0, 0.0, 0.0), + offset_units ) def _create_and_add_transform( diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index 35a9b304f..d57d90d34 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -123,7 +123,7 @@ def qmatrix(self) -> QMatrix4x4: transform.matrix() if self.transform_type == TransformationType.ROTATION: # apply offset first to translate it, and then apply rotation - transform.setTranslation(self.offset_vector) + transform.setTranslation(self.offset_vector * self._ui_offset_scale_factor) quaternion = transform.fromAxisAndAngle( self.vector, self.ui_value * self._ui_scale_factor ) @@ -132,7 +132,7 @@ def qmatrix(self) -> QMatrix4x4: elif self.transform_type == TransformationType.TRANSLATION: transform.setTranslation( self.vector.normalized() * self.ui_value * self._ui_scale_factor - + self.offset_vector + + self.offset_vector * self._ui_offset_scale_factor ) else: raise ( @@ -155,7 +155,7 @@ def offset_units(self): @offset_units.setter def offset_units(self, new_units): - self._evaluate_ui_scale_factor(new_units) + self._evaluate_ui_offset_scale_factor(new_units) self.attributes.set_attribute_value(CommonAttrs.OFFSET_UNITS, new_units) def _evaluate_ui_scale_factor(self, units): @@ -167,6 +167,13 @@ def _evaluate_ui_scale_factor(self, units): except Exception: pass + def _evaluate_ui_offset_scale_factor(self, units): + try: + if self.transform_type == TransformationType.TRANSLATION: + self._ui_offset_scale_factor = calculate_unit_conversion_factor(units, METRES) + except Exception: + pass + @property def depends_on(self) -> "Transformation": return self.attributes.get_attribute_value(CommonAttrs.DEPENDS_ON) diff --git a/ui/transformation.py b/ui/transformation.py index 9c4027c71..f5b6ae533 100644 --- a/ui/transformation.py +++ b/ui/transformation.py @@ -67,7 +67,6 @@ def setup_ui(self, transformation): offset_font.setBold(True) self.offset_label = QLabel("Offset") self.offset_label.setFont(offset_font) - self.offset_line_edit = QLineEdit(transformation) self.depends_on_text_box = QLineEdit(transformation) self.depends_on_text_box.setToolTip("depends_on for transformation.") diff --git a/ui_tests/test_ui_transformation_view.py b/ui_tests/test_ui_transformation_view.py index edc48abb0..89b645b85 100644 --- a/ui_tests/test_ui_transformation_view.py +++ b/ui_tests/test_ui_transformation_view.py @@ -38,7 +38,7 @@ def create_corresponding_value_dataset(value: Any): def test_UI_GIVEN_scalar_vector_WHEN_creating_translation_view_THEN_ui_is_filled_correctly( qtbot, model, component ): - x = 0 + x = 1 y = 0 z = 0 value = 0.0 @@ -63,7 +63,7 @@ def test_UI_GIVEN_scalar_vector_WHEN_creating_translation_view_THEN_ui_is_filled def test_UI_GIVEN_scalar_angle_WHEN_creating_rotation_view_THEN_ui_is_filled_correctly( qtbot, model, component ): - x = 0 + x = 1 y = 0 z = 0 angle = 90 @@ -121,7 +121,7 @@ def test_UI_GIVEN_array_dataset_as_magnitude_WHEN_creating_translation_THEN_ui_i ): array = np.array([1, 2, 3, 4]) - x = 0 + x = 1 y = 0 z = 0 transform = component.add_translation(QVector3D(x, y, z), name="test") From 499df194951239e11110c066594bc7430391ae49 Mon Sep 17 00:00:00 2001 From: George O'Neill Date: Wed, 25 Oct 2023 12:28:54 +0200 Subject: [PATCH 39/39] initialise _ui_offset_scale_factor --- nexus_constructor/model/transformation.py | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/nexus_constructor/model/transformation.py b/nexus_constructor/model/transformation.py index d57d90d34..32fc30726 100644 --- a/nexus_constructor/model/transformation.py +++ b/nexus_constructor/model/transformation.py @@ -39,6 +39,7 @@ class Transformation(Dataset): _dependents = attr.ib(type=list, init=False) _ui_value = attr.ib(type=float, default=None) _ui_scale_factor = attr.ib(type=float, default=1.0, init=False) + _ui_offset_scale_factor = attr.ib(type=float, default=1.0, init=False) @property def absolute_path(self): @@ -168,11 +169,7 @@ def _evaluate_ui_scale_factor(self, units): pass def _evaluate_ui_offset_scale_factor(self, units): - try: - if self.transform_type == TransformationType.TRANSLATION: - self._ui_offset_scale_factor = calculate_unit_conversion_factor(units, METRES) - except Exception: - pass + self._ui_offset_scale_factor = calculate_unit_conversion_factor(units, METRES) @property def depends_on(self) -> "Transformation":