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ngs-tools

NGS data diagnose & manipulations tools

FastQ

  • 'fastq_detect.pl': analyze the N first reads from a fastq file (10000) and match with existing FastQ formats. report matching results.

SAM

  • 'uniq_mappings.pl': filter uniquely mapping reads and multiple mapping reads from a SAM stream to separate BAM files. The Input should be name-sorted (queryname).