diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index aeb3b31cab7..07a5872d2a2 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -13,7 +13,7 @@ permissions: env: ERT_SHOW_BACKTRACE: 1 ECL_SKIP_SIGNAL: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: benchmark: @@ -35,14 +35,17 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: "3.11" - name: Install ert with dev-deps run: | - uv pip install ".[dev]" + uv sync --group dev - name: Run benchmark run: | - pytest tests/ert/performance_tests/test_analysis.py::test_and_benchmark_adaptive_localization_with_fields --benchmark-json output.json + uv run pytest tests/ert/performance_tests/test_analysis.py::test_and_benchmark_adaptive_localization_with_fields --benchmark-json output.json - name: Store benchmark result uses: benchmark-action/github-action-benchmark@v1 diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml index c7fef6e5b8c..5978ee368ab 100644 --- a/.github/workflows/build_and_test.yml +++ b/.github/workflows/build_and_test.yml @@ -11,7 +11,7 @@ on: env: ERT_SHOW_BACKTRACE: 1 ECL_SKIP_SIGNAL: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -166,10 +166,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ert run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev - name: Make test directory run: | @@ -180,7 +183,7 @@ jobs: - name: Test docs run: | - sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs + uv run sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs publish: name: Publish to PyPI diff --git a/.github/workflows/codspeed.yml b/.github/workflows/codspeed.yml index 91b8388a9f0..3be1111bae9 100644 --- a/.github/workflows/codspeed.yml +++ b/.github/workflows/codspeed.yml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -25,12 +25,15 @@ jobs: python-version: '3.12' - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: '3.12' - run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev uv pip uninstall pytest-benchmark uv pip install pytest-codspeed - uses: CodSpeedHQ/action@v3 with: token: ${{ secrets.CODSPEED_TOKEN }} run: | - pytest tests/ert/performance_tests --codspeed --timeout=1200 + uv run pytest tests/ert/performance_tests --codspeed --timeout=1200 diff --git a/.github/workflows/run_ert_test_data_setups.yml b/.github/workflows/run_ert_test_data_setups.yml index b2dcca20b6c..a26768069d2 100644 --- a/.github/workflows/run_ert_test_data_setups.yml +++ b/.github/workflows/run_ert_test_data_setups.yml @@ -13,7 +13,7 @@ concurrency: env: ERT_SHOW_BACKTRACE: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: run-ert-test-data: @@ -44,26 +44,29 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT and dependencies run: | - uv pip install . + uv sync - name: Test poly example run: | pushd test-data/ert/poly_example - ert test_run poly.ert + uv run ert test_run poly.ert popd - name: Test snake_oil run: | pushd test-data/ert/snake_oil uv pip install oil_reservoir_synthesizer resdata - ert test_run snake_oil.ert + uv run ert test_run snake_oil.ert popd - name: Test snake_oil_field run: | pushd test-data/ert/snake_oil_field - ert test_run snake_oil.ert + uv run ert test_run snake_oil.ert popd diff --git a/.github/workflows/style.yml b/.github/workflows/style.yml index 0f211579068..5865787f0e7 100644 --- a/.github/workflows/style.yml +++ b/.github/workflows/style.yml @@ -8,7 +8,7 @@ on: pull_request: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -34,12 +34,15 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT with style dependencies run: | - uv pip install ".[style]" + uv sync --group style - name: Run style check if: ${{ always() }} run: | - SKIP=no-commit-to-branch pre-commit run --all-files --show-diff-on-failure + SKIP=no-commit-to-branch uv run pre-commit run --all-files --show-diff-on-failure diff --git a/.github/workflows/test_ert.yml b/.github/workflows/test_ert.yml index aa05ff55996..934ba7dccaf 100644 --- a/.github/workflows/test_ert.yml +++ b/.github/workflows/test_ert.yml @@ -11,7 +11,7 @@ on: env: ERT_SHOW_BACKTRACE: 1 ECL_SKIP_SIGNAL: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: tests-ert: @@ -32,15 +32,18 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install ert run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev - name: GUI Test if: inputs.test-type == 'gui-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25 - name: Upload artifact images uses: actions/upload-artifact@v4 @@ -53,18 +56,18 @@ jobs: - name: CLI Test if: inputs.test-type == 'cli-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable --dist loadgroup tests/ert/ui_tests/cli --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable --dist loadgroup tests/ert/ui_tests/cli --durations=25 - name: Unit Test if: inputs.test-type == 'unit-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25 - pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25 + uv run pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage - name: Performance Test if: inputs.test-type == 'performance-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --dist loadgroup tests/ert/performance_tests --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --dist loadgroup tests/ert/performance_tests --durations=25 - name: Upload coverage to Codecov id: codecov1 @@ -102,13 +105,16 @@ jobs: - name: Test CLI run: | - ert --help + uv run ert --help - name: Test for a clean repository run: | # Remove things we have generated on purpose: + ls -la rm -rf .coverage rm -f coverage.xml cov1.xml cov2.xml junit.xml rm -f ert.*.whl + rm -f .coverage.* + ls -la git status --porcelain test -z "$(git status --porcelain)" diff --git a/.github/workflows/test_ert_with_slurm.yml b/.github/workflows/test_ert_with_slurm.yml index cead32ad1c7..be30321e0bc 100644 --- a/.github/workflows/test_ert_with_slurm.yml +++ b/.github/workflows/test_ert_with_slurm.yml @@ -7,7 +7,7 @@ on: type: string env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: test-ert-on-slurm: @@ -25,10 +25,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install ert run: | - uv pip install ".[dev]" + uv sync --group dev - name: Install and setup slurm run: | @@ -69,8 +72,8 @@ jobs: run: | set -e export _ERT_TESTS_ALTERNATIVE_QUEUE=AlternativeQ - pytest tests/ert/unit_tests/scheduler --slurm - pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm + uv run pytest tests/ert/unit_tests/scheduler --slurm + uv run pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm - name: Test poly-example on slurm run: | @@ -84,4 +87,4 @@ jobs: QUEUE_SYSTEM SLURM EOF - time ert ensemble_experiment poly.ert + time uv run ert ensemble_experiment poly.ert diff --git a/.github/workflows/test_everest.yml b/.github/workflows/test_everest.yml index 7983664ae07..12efc1407f0 100644 --- a/.github/workflows/test_everest.yml +++ b/.github/workflows/test_everest.yml @@ -12,7 +12,7 @@ on: env: NO_PROJECT_RES: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: tests-everest: @@ -32,48 +32,51 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install Everest and dependencies run: | - uv pip install ".[dev,everest]" + uv sync --extra everest --group dev - name: Run Tests Linux if: ${{ inputs.test-type == 'test' && runner.os != 'macOS'}} run: | - pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv + uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv - name: Run Tests macOS if: ${{ inputs.test-type == 'test' && runner.os == 'macOS'}} run: | - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv - name: Run Integration Tests Linux if: ${{inputs.test-type == 'integration-test' && runner.os != 'macOS'}} run: | - pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv + uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv - name: Run Integration Tests macOS if: ${{inputs.test-type == 'integration-test' && runner.os == 'macOS'}} run: | - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup - name: Build Documentation if: inputs.test-type == 'doc' run: | uv pip install git+https://github.com/equinor/everest-models.git mkdir tmp - sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs + uv run sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs - name: Run tests requiring everest-models if: inputs.test-type == 'everest-models-test' run: | uv pip install git+https://github.com/equinor/everest-models.git - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup - name: Test docs entry point if: inputs.test-type == 'everest-docs-entry-test' run: | - python -m everest.docs + uv run python -m everest.docs - name: Upload coverage to Codecov if: inputs.test-type != 'everest-docs-entry-test' && inputs.test-type != 'doc' diff --git a/.github/workflows/test_semeio.yml b/.github/workflows/test_semeio.yml index 2de23376513..d0444b0cb4c 100644 --- a/.github/workflows/test_semeio.yml +++ b/.github/workflows/test_semeio.yml @@ -8,7 +8,7 @@ name: Test Semeio on: [pull_request] env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -35,10 +35,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ert run: | - uv pip install . + uv sync - name: Get semeio run: | @@ -47,5 +50,5 @@ jobs: - name: Test semeio run: | pushd semeio - uv pip install ".[test]" - pytest + VIRTUAL_ENV=../.venv uv pip install ".[test]" + UV_PROJECT_ENVIRONMENT=../.venv uv run --no-sync pytest diff --git a/.github/workflows/typing.yml b/.github/workflows/typing.yml index b40c8af8b74..c31ef699a05 100644 --- a/.github/workflows/typing.yml +++ b/.github/workflows/typing.yml @@ -8,7 +8,7 @@ on: pull_request: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -34,16 +34,19 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v4 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT and dependencies run: | - uv pip install ".[dev, types, everest]" + uv sync --extra everest --group dev --group types - run: echo ::add-matcher::.github/mypy-matcher.json - name: Run mypy ert run: | - mypy src/ert + uv run mypy src/ert - name: Run mypy everest run: | - mypy src/everest + uv run mypy src/everest diff --git a/pyproject.toml b/pyproject.toml index 7a226b0c46a..2c4d8845b12 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,7 +11,7 @@ authors = [ { name = "Equinor ASA", email = "fg_sib-scout@equinor.com" }, ] description = "Ensemble based Reservoir Tool (ERT)" -requires-python = ">=3.11" +requires-python = ">=3.11, <3.13" readme = "README.md" license = { text = "GPL-3.0" } classifiers = [ @@ -91,6 +91,19 @@ wdupdate = "everest.jobs.scripts.wdupdate:main" Repository = "https://github.com/equinor/ert" [project.optional-dependencies] +everest = [ + "progressbar2", + "ruamel.yaml", + "fastapi", + "decorator", + "resdata", + "colorama", + "ropt[pandas]>=0.1,<0.11", + "ropt-dakota>=0.1,<0.11", + "seba-sqlite", +] + +[dependency-groups] dev = [ 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