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Gemfile.lock
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GIT
remote: https://github.com/SysMO-DB/acts_as_activity_logged.git
revision: da0b6d8e4ccabfa231c39aa89522c8ba73f03c0e
specs:
acts_as_activity_logged (0.3.3)
GIT
remote: https://github.com/SysMO-DB/acts_as_trashable.git
revision: ff5dcddece0d03014a8ffde526da59a151501cd7
specs:
acts_as_trashable (1.0.6)
activerecord (>= 2.2)
GIT
remote: https://github.com/SysMO-DB/app_version.git
revision: 773b6ae72d9cba038fce1a3502feb5de2f2b75a3
specs:
app_version (1.0.0)
GIT
remote: https://github.com/SysMO-DB/convert_office.git
revision: 753f2567dbd625bc89071e1150404efbb562e130
ref: 753f2567dbd625bc89071e1150404efbb562e130
specs:
convert_office (0.9.1)
GIT
remote: https://github.com/SysMO-DB/doi_query_tool.git
revision: d87ae6ffa2393beba4bbb49817cf04a60f520fee
specs:
doi_query_tool (0.0.0)
GIT
remote: https://github.com/SysMO-DB/fleximage
revision: 658985eb1460fb5d6612f624463e6cbf067ad973
specs:
fleximage (0.1)
GIT
remote: https://github.com/SysMO-DB/gibberish.git
revision: d24c42b9608f39f82e37e757f530d8199049c557
specs:
gibberish (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_rails_settings.git
revision: e3f7fe9625ea27fea42b02c95e30cb4f1341655b
specs:
my_rails_settings (1.0.0)
GIT
remote: https://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
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revision: 4ff41d5e7d1f17440240fe0886a7c9827f8f53c6
specs:
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GIT
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revision: 5f6c85f1478545856aa36d1cc234255b9abc0c13
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rack-openid (~> 1.3)
GIT
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revision: 06fa67ba4b2bd66878d745e9de5d6d6c8015bc92
specs:
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actionpack
activesupport
rails (>= 3.0.0)
GIT
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revision: 494451d01aeeb70b186783d08b6b9aefcb537e98
specs:
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GIT
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GIT
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revision: 3f9798ec54f227e852b944bb14f6f90d05cde893
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GIT
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revision: c02bea47e477c1ac59e45a2a8a51aaa2c8e6b72f
specs:
white_list_formatted_content (1.0.0)
GIT
remote: https://github.com/myGrid/annotations.git
revision: d33e78993ee957fa12d71cbe9f03100dd9b0ad15
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GIT
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GIT
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GIT
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revision: b36e19c85b7a58d08a73aa418c0f838442c6dfd3
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GIT
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revision: 977048211b94599fe0f08eb37a481f3d69df48f6
specs:
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GEM
remote: https://rubygems.org/
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mime-types
parser (2.2.0.3)
ast (>= 1.1, < 3.0)
passenger (4.0.59)
daemon_controller (>= 1.2.0)
rack
rake (>= 0.8.1)
pg (0.18.1)
pmrpc-rails (1.0.1)
railties (>= 3.1.0)
polyglot (0.3.5)
pothoven-attachment_fu (3.2.15)
powerbar (1.0.12)
ansi (~> 1.5.0)
hashie (>= 1.1.0)
powerpack (0.1.0)
pr_geohash (1.0.0)
procto (0.0.2)
prototype-rails (3.2.1)
rails (~> 3.2)
pry (0.10.1)
coderay (~> 1.1.0)
method_source (~> 0.8.1)
slop (~> 3.4)
pry-doc (0.6.0)
pry (~> 0.9)
yard (~> 0.8)
pry-remote (0.1.8)
pry (~> 0.9)
slop (~> 3.0)
psych (2.0.13)
rack (1.4.5)
rack-cache (1.2)
rack (>= 0.4)
rack-openid (1.4.2)
rack (>= 1.1.0)
ruby-openid (>= 2.1.8)
rack-ssl (1.3.4)
rack
rack-test (0.6.3)
rack (>= 1.0)
rails (3.2.21)
actionmailer (= 3.2.21)
actionpack (= 3.2.21)
activerecord (= 3.2.21)
activeresource (= 3.2.21)
activesupport (= 3.2.21)
bundler (~> 1.0)
railties (= 3.2.21)
rails_autolink (1.1.6)
rails (> 3.1)
rails_best_practices (1.15.7)
activesupport
code_analyzer (>= 0.4.3)
colored
erubis
i18n
json
require_all
ruby-progressbar
railties (3.2.21)
actionpack (= 3.2.21)
activesupport (= 3.2.21)
rack-ssl (~> 1.3.2)
rake (>= 0.8.7)
rdoc (~> 3.4)
thor (>= 0.14.6, < 2.0)
rainbow (2.0.0)
raindrops (0.13.0)
rake (10.4.2)
ratom (0.9.0)
libxml-ruby (~> 2.6)
rb-fsevent (0.9.4)
rb-inotify (0.9.5)
ffi (>= 0.5.0)
rdf (1.1.9)
link_header (~> 0.0, >= 0.0.8)
rdf-aggregate-repo (1.1.0)
rdf (>= 1.1)
rdf-isomorphic (1.1.0)
rdf (>= 1.1)
rdf-json (1.1.1)
rdf (~> 1.1)
rdf-microdata (2.0)
htmlentities (~> 4.3)
nokogiri (~> 1.6)
rdf (~> 1.1)
rdf-xsd (~> 1.1)
rdf-n3 (1.1.2)
rdf (~> 1.1, >= 1.1.5)
rdf-rdfa (1.1.5)
haml (~> 4.0)
htmlentities (~> 4.3)
rdf (~> 1.1, >= 1.1.6)
rdf-aggregate-repo
rdf-xsd (~> 1.1)
rdf-rdfxml (1.1.3)
htmlentities (~> 4.3)
rdf (~> 1.1, >= 1.1.6)
rdf-rdfa (~> 1.1, >= 1.1.4.1)
rdf-xsd (~> 1.1)
rdf-reasoner (0.2.1)
rdf (~> 1.1, >= 1.1.4.2)
rdf-turtle (~> 1.1)
rdf-xsd (~> 1.1)
rdf-trig (1.1.3.1)
ebnf (~> 0.3, >= 0.3.5)
rdf (~> 1.1, >= 1.1.2.1)
rdf-turtle (~> 1.1, >= 1.1.3)
rdf-trix (1.1.0)
rdf (>= 1.1)
rdf-turtle (1.1.5)
ebnf (~> 0.3, >= 0.3.6)
rdf (~> 1.1, >= 1.1.4)
rdf-virtuoso (0.1.6)
api_smith (~> 1.3.0)
httparty (~> 0.12.0)
rdf (~> 1.1.0)
rdf-xsd (1.1.3)
rdf (~> 1.1, >= 1.1.9)
rdoc (3.12.2)
json (~> 1.4)
recaptcha (0.3.6)
reek (1.6.5)
parser (~> 2.2.0.pre.7)
rainbow (>= 1.99, < 3.0)
unparser (~> 0.2.2)
ref (2.0.0)
request-log-analyzer (1.13.4)
require_all (1.3.2)
rest-client (1.7.3)
mime-types (>= 1.16, < 3.0)
netrc (~> 0.7)
rfc-822 (0.4.0)
rmagick (2.13.2)
rsolr (1.0.11)
builder (>= 2.1.2)
rspec-core (3.2.1)
rspec-support (~> 3.2.0)
rspec-expectations (3.2.0)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.2.0)
rspec-mocks (3.2.1)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.2.0)
rspec-rails (3.2.1)
actionpack (>= 3.0, < 4.3)
activesupport (>= 3.0, < 4.3)
railties (>= 3.0, < 4.3)
rspec-core (~> 3.2.0)
rspec-expectations (~> 3.2.0)
rspec-mocks (~> 3.2.0)
rspec-support (~> 3.2.0)
rspec-support (3.2.2)
rubocop (0.29.1)
astrolabe (~> 1.3)
parser (>= 2.2.0.1, < 3.0)
powerpack (~> 0.1)
rainbow (>= 1.99.1, < 3.0)
ruby-progressbar (~> 1.4)
ruby-openid (2.6.0)
ruby-prof (0.15.6)
ruby-progressbar (1.7.1)
ruby_parser (3.6.4)
sexp_processor (~> 4.1)
rubycritic (1.3.0)
flay (= 2.4.0)
flog (= 4.2.1)
parser (>= 2.2.0, < 3.0)
reek (= 1.6.5)
virtus (~> 1.0)
rubyzip (1.1.7)
safe_yaml (1.0.4)
sass (3.4.13)
sass-rails (3.2.6)
railties (~> 3.2.0)
sass (>= 3.1.10)
tilt (~> 1.3)
savon (1.1.0)
akami (~> 1.2.0)
builder (>= 2.1.2)
gyoku (~> 0.4.5)
httpi (~> 1.1.0)
nokogiri (>= 1.4.0)
nori (~> 1.1.0)
wasabi (~> 2.5.0)
sax-machine (1.3.0)
sexp_processor (4.4.5)
shellany (0.0.1)
simple-spreadsheet-extractor (0.15.0)
libxml-ruby (~> 2.6)
open4 (= 1.3.0)
simplecov (0.9.2)
docile (~> 1.1.0)
multi_json (~> 1.0)
simplecov-html (~> 0.9.0)
simplecov-html (0.9.0)
slop (3.6.0)
sparql (1.1.4)
builder (~> 3.0)
ebnf (~> 0.3, >= 0.3.5)
rdf (~> 1.1, >= 1.1.4)
rdf-aggregate-repo (~> 1.1, >= 1.1.0)
rdf-xsd (~> 1.1)
sparql-client (~> 1.1)
sxp (~> 0.1)
sparql-client (1.1.3.1)
net-http-persistent (~> 2.9)
rdf (~> 1.1)
sprockets (2.2.3)
hike (~> 1.2)
multi_json (~> 1.0)
rack (~> 1.0)
tilt (~> 1.1, != 1.3.0)
sqlite3 (1.3.10)
sunspot (2.1.1)
pr_geohash (~> 1.0)
rsolr (~> 1.0.7)
sunspot_matchers (2.1.1.1)
sunspot_rails (2.1.1)
nokogiri
rails (>= 3)
sunspot (= 2.1.1)
sunspot_solr (2.1.1)
sxp (0.1.5)
systemu (2.6.4)
t2-server (1.3.0)
libxml-ruby (~> 2.6)
net-http-persistent (~> 2.6)
ratom (~> 0.9)
taverna-baclava (~> 1.0)
taverna-baclava (1.0.1)
builder (~> 3.0)
taverna-t2flow (0.5.1)
libxml-ruby (>= 1.1.4)
term-ansicolor (1.3.0)
tins (~> 1.0)
test_after_commit (0.4.0)
activerecord (>= 3.2)
therubyracer (0.12.2)
libv8 (~> 3.16.14.0)
ref
thor (0.19.1)
thread_safe (0.3.4)
tilt (1.4.1)
timers (4.0.1)
hitimes
tins (1.3.4)
transaction_isolation (1.0.3)
activerecord (>= 3.0.11)
treetop (1.4.15)
polyglot
polyglot (>= 0.3.1)
turbo-sprockets-rails3 (0.3.14)
railties (> 3.2.8, < 4.0.0)
sprockets (>= 2.2.0)
tzinfo (0.3.43)
ucf (2.0.0)
zip-container (~> 3.0.1)
unf (0.1.4)
unf_ext
unf_ext (0.0.6)
unicorn (4.8.3)
kgio (~> 2.6)
rack
raindrops (~> 0.7)
unicorn-rails (2.2.0)
rack
unicorn
unparser (0.2.2)
abstract_type (~> 0.0.7)
adamantium (~> 0.2.0)
concord (~> 0.1.5)
diff-lcs (~> 1.2.5)
equalizer (~> 0.0.9)
parser (~> 2.2.0.2)
procto (~> 0.0.2)
uuid (2.3.7)
macaddr (~> 1.0)
virtus (1.0.4)
axiom-types (~> 0.1)
coercible (~> 1.0)
descendants_tracker (~> 0.0, >= 0.0.3)
equalizer (~> 0.0, >= 0.0.9)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
webmock (1.20.4)
addressable (>= 2.3.6)
crack (>= 0.3.2)
webrobots (0.1.1)
will_paginate (3.0.7)
yaml_db (0.3.0)
rails (>= 3.0, < 4.3)
rake (>= 0.8.7)
yard (0.8.7.6)
yui-compressor (0.12.0)
zip-container (3.0.1)
rubyzip (~> 1.1.6)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (= 4.2.9)
acts-as-taggable-on (= 3.0.1)
acts_as_activity_logged!
acts_as_list
acts_as_trashable!
acts_as_tree
app_version!
bio
bioportal (>= 2.2)
bives
bootstrap-sass (= 3.1.1.0)
bootstrap-tagsinput-rails
bootstrap-typeahead-rails
breadcrumbs_on_rails
calendar_date_select!
cancan
cocaine
colorize (= 0.7.4)
convert_office!
country-select
coveralls
daemons
datacite_doi_ify
delayed_job_active_record
docsplit
doi_query_tool!
dynamic_form
equivalent-xml
exception_notification
factory_girl (= 2.6.4)
feedjira (~> 1)
fleximage!
fssm
gibberish!
google-analytics-rails
guard-rubycritic
handlebars_assets
hpricot (~> 0.8.2)
in_place_editing
jquery-rails (~> 3)
jquery-ui-rails (~> 3)
libxml-ruby (>= 2.6.0)
linkeddata
lograge
mechanize
metainspector
mimemagic
minitest (~> 4.0)
minitest-reporters
modporter-plugin
my_annotations!
my_rails_settings!
my_responds_to_parent!
my_savage_beast!
mysql2
nokogiri
open_id_authentication!
passenger
pg
piwik_analytics!
pothoven-attachment_fu
prototype-rails
pry
pry-doc
pry-remote
psych
rack-openid
rails (= 3.2.21)
rails_autolink
rails_best_practices
rdf-virtuoso (>= 0.1.6)
rdoc
recaptcha
redbox!
request-log-analyzer
rest-client
rfc-822
rmagick (= 2.13.2)
ro-bundle!
rspec-rails
rubocop
ruby-openid
ruby-prof
rubycritic
rubyzip (~> 1.1.4)
sass-rails (>= 3.2)
savon (= 1.1.0)
search_biomodel (= 2.2.1)!
simple-spreadsheet-extractor (~> 0.15.0)
site_announcements!
sqlite3
sunspot_matchers
sunspot_rails
sunspot_solr
taverna-player!
taverna-t2flow
test_after_commit
therubyracer
transaction_isolation
turbo-sprockets-rails3
unicorn-rails
uuid (~> 2.3)
webmock
white_list!
white_list_formatted_content!
will_paginate (~> 3.0.4)
yaml_db
yui-compressor