setup.py

from setuptools import setup, find_packages
from setuptools.command.install import install
import os.path
import sys


VERSION='2.3.3'

here = os.path.abspath(os.path.dirname(__file__))

readme_file = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'README.md')
try:
    from m2r import parse_from_file
    readme = parse_from_file(readme_file)
except ImportError:
    # m2r may not be installed in user environment
    with open(readme_file) as f:
        readme = f.read()

class VerifyVersionCommand(install):
    """Custom command to verify that the git tag matches our version"""
    description = 'verify that the git tag matches our version'

    def run(self):

        git_tag = os.getenv('GIT_TAG')
        if git_tag != VERSION:
            info = "Git tag: {0} does not match the version of this app: {1}".format(
                git_tag, VERSION
            )
            sys.exit(info)

setup(
    name='ciftify',
    version=VERSION,
    description='The tools of the Human Connectome Project (HCP) '\
            'adapted for working with non-HCP datasets',
    long_description=readme,
    url='https://github.com/edickie/ciftify',
    author='Erin W.E. Dickie',
    author_email='erin.w.dickie@gmail.com',
    license='MIT',
    classifiers=[
            'Development Status :: 4 - Beta',
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: MIT License',
            'Natural Language :: English',
            'Operating System :: POSIX :: Linux',
            'Programming Language :: Python :: 3'],
    keywords='PINT neuroimaging fMRI cifti gifti nifti HCP',
    packages=find_packages(exclude=['tests']),
    data_files=[('', ['LICENSE', 'README.md'])],
    entry_points={
        'console_scripts': [
            'cifti_vis_fmri=ciftify.bin.cifti_vis_fmri:main',
            'cifti_vis_PINT=ciftify.bin.cifti_vis_PINT:main',
            'cifti_vis_recon_all=ciftify.bin.cifti_vis_recon_all:main',
            'cifti_vis_map=ciftify.bin.cifti_vis_map:main',
            'ciftify_groupmask=ciftify.bin.ciftify_groupmask:main',
            'ciftify_meants=ciftify.bin.ciftify_meants:main',
            'ciftify_peaktable=ciftify.bin.ciftify_statclust_report:main',
            'ciftify_dlabel_report=ciftify.bin.ciftify_dlabel_report:main',
            'ciftify_PINT_vertices=ciftify.bin.ciftify_PINT_vertices:main',
            'ciftify_clean_img=ciftify.bin.ciftify_clean_img:main',
            'ciftify_postPINT1_concat=ciftify.bin.ciftify_postPINT1_concat:main',
            'ciftify_postPINT2_sub2sub=ciftify.bin.ciftify_postPINT2_sub2sub:main',
            'ciftify_recon_all=ciftify.bin.ciftify_recon_all:main',
            'ciftify_surface_rois=ciftify.bin.ciftify_surface_rois:main',
            'ciftify_vol_result=ciftify.bin.ciftify_vol_result:main',
            'ciftify_seed_corr=ciftify.bin.ciftify_seed_corr:main',
            'ciftify_subject_fmri=ciftify.bin.ciftify_subject_fmri:main',
            'ciftify_falff=ciftify.bin.ciftify_falff:main',
            'ciftify_dlabel_to_vol=ciftify.bin.ciftify_dlabel_to_vol:main',
            'ciftify_statclust_report=ciftify.bin.ciftify_statclust_report:main',
            'extract_nuisance_regressors=ciftify.bin.extract_nuisance_regressors:main'
        ],
    },
    scripts=['ciftify/bin/filter_hcp.sh','ciftify/bin/cifti_vis_RSN'],
    install_requires=[
            'docopt',
            'matplotlib',
            'nibabel',
            'numpy',
            'pandas',
            'PyYaml',
            'seaborn',
            'scipy',
            'pillow',
            'nilearn',
            'scikit-learn',
            'pybids>=0.7.0'],
    include_package_data=True,
    cmdclass={
        'verify': VerifyVersionCommand,
    }
)