diff --git a/.python-version b/.python-version index 2c07333..bd28b9c 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.11 +3.9 diff --git a/README-public.md b/README-public.md index 7010ec2..105e33f 100644 --- a/README-public.md +++ b/README-public.md @@ -73,10 +73,14 @@ The URI of a graph containing extra ontological information. RDFS and OWL defini If enabled, OWL inferencing expansion of the data graph is performed before validation. Options are *RDFS*, *OWLRL*, *Both*, *None*. Default value: *None*. -### Advanced +### SHACL Advanced Features Enable SHACL Advanced Features. Default value: *false*. +### Remove additional graph types from data graph + +Before validating, remove graph types that may have been added by CMEM to the data graph. Removes triples of the form ` a `, where `` is one +of ``, ``, ``. Default value: *false*. ## Parameter Input @@ -98,4 +102,5 @@ In order to set options via the input the following parameter names can be used: | Meta-SHACL | meta_shacl | | Ontology graph URI | ontology_graph_uri | | Inference | inference | -| Advanced | advanced | \ No newline at end of file +| Advanced | advanced | +| Remove additional graph types from data graph | remove_graph_types | \ No newline at end of file diff --git a/README.md b/README.md index c829cb9..2f7512c 100644 --- a/README.md +++ b/README.md @@ -79,6 +79,10 @@ If enabled, OWL inferencing expansion of the data graph is performed before vali Enable SHACL Advanced Features. Default value: *false*. +### Remove additional graph types from data graph + +Before validating, remove graph types that may have been added by CMEM to the data graph. Removes triples of the form ` a `, where `` is one +of ``, ``, ``. Default value: *false*. ## Parameter Input @@ -101,3 +105,4 @@ In order to set options via the input the following parameter names can be used: | Ontology graph URI | ontology_graph_uri | | Inference | inference | | Advanced | advanced | +| Remove additional graph types from data graph | remove_graph_types | \ No newline at end of file diff --git a/cmem_plugin_pyshacl/plugin_pyshacl.py b/cmem_plugin_pyshacl/plugin_pyshacl.py index 91061a3..3aee406 100644 --- a/cmem_plugin_pyshacl/plugin_pyshacl.py +++ b/cmem_plugin_pyshacl/plugin_pyshacl.py @@ -273,6 +273,18 @@ def langfilter(lbl): default_value=False, advanced=True, ), + PluginParameter( + param_type=BoolParameterType(), + name="remove_graph_types", + label="Remove additional graph types from data graph", + description="Before validating, remove graph types that may have been " + "added by CMEM to the data graph. Removes triples of the form a " + ", where type is one of , " + ", " + ".", + default_value=False, + advanced=True, + ), ], ) # pylint: disable-msg=too-many-instance-attributes @@ -299,6 +311,7 @@ def __init__( meta_shacl, inference, advanced, + remove_graph_types, ) -> None: self.data_graph_uri = data_graph_uri self.shacl_graph_uri = shacl_graph_uri @@ -315,6 +328,7 @@ def __init__( self.meta_shacl = meta_shacl self.inference = inference self.advanced = advanced + self.remove_graph_types = remove_graph_types discover_plugins_in_module("cmem_plugin_pyshacl") this_plugin = Plugin.plugins[0] @@ -656,6 +670,17 @@ def execute(self, inputs=(), context: ExecutionContext = ExecutionContext()): start = time() data_graph = self.get_graph(self.data_graph_uri) self.log.info(f"Finished loading data graph in {e_t(start)} seconds") + + if self.remove_graph_types: + self.log.info("Removing additional graph types from data graph") + graph_type_iris = [ + "http://rdfs.org/ns/void#Dataset", + "https://vocab.eccenca.com/shui/ShapeCatalog", + "https://vocab.eccenca.com/dsm/ThesaurusProject", + ] + for iri in graph_type_iris: + data_graph.remove((URIRef(self.data_graph_uri), RDF.type, URIRef(iri))) + self.log.info(f"Loading SHACL graph <{self.shacl_graph_uri}> into memory...") start = time() shacl_graph = self.get_graph(self.shacl_graph_uri) diff --git a/poetry.lock b/poetry.lock index dd08704..cd0c446 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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python version here, change it also in .python-version -python = "^3.11" +python = ">=3.9,<4.0" pyshacl = "^0.22.2" -validators = "^0.20.0" +validators = "^0.21.1" rdflib = "^6.2.0" distutils-strtobool = "^0.1.0" ruamel-yaml = "^0.17.21" @@ -37,7 +37,7 @@ coverage = "^7.2.3" defusedxml = "^0.7.1" flake8-formatter-junit-xml = "^0.0.6" # https://github.com/smarie/python-genbadge/issues/31 -pillow = "^9.5.0" +pillow = "^10.1.0" genbadge = "^1.1.0" mypy = "^1.2.0" # https://github.com/rasjani/pylint-junit/issues/1