From 4d1ac9116ff2f3952abc47ee1a2ec6fb8acdc4b6 Mon Sep 17 00:00:00 2001 From: Robert Isele Date: Fri, 2 Feb 2024 15:59:14 +0100 Subject: [PATCH 1/5] Added initial draft of the SchemaMatcherPlugin --- .../dataintegration/description.py | 3 ++ .../dataintegration/matching/matcher.py | 47 +++++++++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 cmem_plugin_base/dataintegration/matching/matcher.py diff --git a/cmem_plugin_base/dataintegration/description.py b/cmem_plugin_base/dataintegration/description.py index b649b32..80a11cb 100644 --- a/cmem_plugin_base/dataintegration/description.py +++ b/cmem_plugin_base/dataintegration/description.py @@ -14,6 +14,7 @@ PluginContextParameterType, ) from cmem_plugin_base.dataintegration.utils import generate_id +from cmem_plugin_base.dataintegration.matching.matcher import SchemaMatcherPlugin class Icon: @@ -129,6 +130,8 @@ def __init__( # pylint: disable=too-many-arguments self.plugin_type = "WorkflowPlugin" elif issubclass(plugin_class, TransformPlugin): self.plugin_type = "TransformPlugin" + elif issubclass(plugin_class, SchemaMatcherPlugin): + self.plugin_type = "SchemaMatcherPlugin" else: raise ValueError( f"Class {plugin_class.__name__} does not implement a supported " diff --git a/cmem_plugin_base/dataintegration/matching/matcher.py b/cmem_plugin_base/dataintegration/matching/matcher.py new file mode 100644 index 0000000..2458eca --- /dev/null +++ b/cmem_plugin_base/dataintegration/matching/matcher.py @@ -0,0 +1,47 @@ +"""All classes related to schema matcher plugins""" + +from cmem_plugin_base.dataintegration.plugins import PluginBase + + +class MatchingSchema: + + def write_rdf_file(self, path: str, lang: str) -> None: + """ + Writes this schema to an RDF file. + + :param path: The target file path. + :param lang: The RDF format. Usually, either "N-TRIPLE" or "TURTLE". + """ + pass # Implementation provided by DataIntegration + + +class Correspondence: + """Candidate match between two properties from two schemata.""" + + def __init__(self, source: str, target: str, confidence: float): + self.source = source + self.target = target + self.confidence = confidence + + +class Alignment: + """Set of correspondences between two schemata.""" + + def __init__(self, matches: list[Correspondence]): + self.matches = matches + + +class SchemaMatcherPlugin(PluginBase): + """ + A schema matcher aligns a source dataset with target vocabularies. + """ + + def match(self, source: MatchingSchema, target: MatchingSchema) -> Alignment: + """ + Aligns a source dataset with target vocabularies. + + :param source: Source schema + :param target: Target schema + + :return: The generated alignment. + """ From 0d5ff4591d83d397689234356618fd8318b2012f Mon Sep 17 00:00:00 2001 From: Robert Isele Date: Fri, 2 Feb 2024 16:08:14 +0100 Subject: [PATCH 2/5] pyproject: Ignore empty body for schema matching plugin --- pyproject.toml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 4d7b7d9..596770e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -82,7 +82,8 @@ ignore_missing_imports = true module = [ "cmem_plugin_base.dataintegration.context", "cmem_plugin_base.dataintegration.plugins", - "cmem_plugin_base.dataintegration.types" + "cmem_plugin_base.dataintegration.types", + "cmem_plugin_base.dataintegration.matching.matcher", ] disable_error_code = "empty-body" From 8136a897348befe000470d23de662c36d4f45313 Mon Sep 17 00:00:00 2001 From: Robert Isele Date: Tue, 6 Feb 2024 09:16:18 +0100 Subject: [PATCH 3/5] Moved schema matcher to new AI package --- .../{matching/matcher.py => ai/schema_matcher.py} | 13 +++++++++---- cmem_plugin_base/dataintegration/description.py | 2 +- pyproject.toml | 2 +- 3 files changed, 11 insertions(+), 6 deletions(-) rename cmem_plugin_base/dataintegration/{matching/matcher.py => ai/schema_matcher.py} (72%) diff --git a/cmem_plugin_base/dataintegration/matching/matcher.py b/cmem_plugin_base/dataintegration/ai/schema_matcher.py similarity index 72% rename from cmem_plugin_base/dataintegration/matching/matcher.py rename to cmem_plugin_base/dataintegration/ai/schema_matcher.py index 2458eca..975c11a 100644 --- a/cmem_plugin_base/dataintegration/matching/matcher.py +++ b/cmem_plugin_base/dataintegration/ai/schema_matcher.py @@ -1,18 +1,19 @@ -"""All classes related to schema matcher plugins""" +"""All classes related to schema matcher plugins. + WARNING: All classes in this file are preliminary and might be changed.""" from cmem_plugin_base.dataintegration.plugins import PluginBase class MatchingSchema: + """The schema that is used by schema matchers.""" def write_rdf_file(self, path: str, lang: str) -> None: - """ - Writes this schema to an RDF file. + """Write this schema to an RDF file. :param path: The target file path. :param lang: The RDF format. Usually, either "N-TRIPLE" or "TURTLE". """ - pass # Implementation provided by DataIntegration + # Implementation provided by DataIntegration class Correspondence: @@ -23,6 +24,10 @@ def __init__(self, source: str, target: str, confidence: float): self.target = target self.confidence = confidence + def __str__(self): + """Convert to a string representation""" + return f"{self.source} - {self.target} ({self.confidence})" + class Alignment: """Set of correspondences between two schemata.""" diff --git a/cmem_plugin_base/dataintegration/description.py b/cmem_plugin_base/dataintegration/description.py index 80a11cb..1475f80 100644 --- a/cmem_plugin_base/dataintegration/description.py +++ b/cmem_plugin_base/dataintegration/description.py @@ -14,7 +14,7 @@ PluginContextParameterType, ) from cmem_plugin_base.dataintegration.utils import generate_id -from cmem_plugin_base.dataintegration.matching.matcher import SchemaMatcherPlugin +from cmem_plugin_base.dataintegration.ai.schema_matcher import SchemaMatcherPlugin class Icon: diff --git a/pyproject.toml b/pyproject.toml index 596770e..0044a36 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,7 +83,7 @@ module = [ "cmem_plugin_base.dataintegration.context", "cmem_plugin_base.dataintegration.plugins", "cmem_plugin_base.dataintegration.types", - "cmem_plugin_base.dataintegration.matching.matcher", + "cmem_plugin_base.dataintegration.ai.schema_matcher", ] disable_error_code = "empty-body" From 7dbd59a1da8187cc981d632e43da55ce797c158d Mon Sep 17 00:00:00 2001 From: Robert Isele Date: Tue, 6 Feb 2024 09:32:37 +0100 Subject: [PATCH 4/5] Added entry to changelog --- CHANGELOG.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 947f1c2..34711a9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,7 +7,9 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/) and this p ## [Unreleased] -TODO: add at least one Added, Changed, Deprecated, Removed, Fixed or Security section +### Added + +- Added `SchemaMatcherPlugin` interface. ## [4.5.0] 2024-01-10 From e650dbb3de36a15c525f2f3933ebbbc729974876 Mon Sep 17 00:00:00 2001 From: Sebastian Tramp Date: Tue, 6 Feb 2024 11:26:12 +0100 Subject: [PATCH 5/5] update dependencies --- poetry.lock | 751 +++++++++++++++++++++++++--------------------------- 1 file changed, 358 insertions(+), 393 deletions(-) diff --git a/poetry.lock b/poetry.lock index 39fdcdb..327bba7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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