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Describe the bug
When I download a generated spreadsheet from DCP the user_friendly names I get for all biomaterials and protocols is a generic Biomaterial ID and Protocol ID instead of DONOR ORGANISM ID and COLLECTION PROTOCOL ID I have from the template that we use.
There can be multiple columns with the same name when we have input biomaterial into one entity or multiple protocols applied to one entity.
To Reproduce
Download a spreadsheet from DCP i.e. GSE67833_neural_stem_cells (works for ~100 spreadsheets I downloaded).
For each tab of the graph for biomaterial or protocol, the user_friendly name is a generic Biomaterial ID or Protocol ID
Expected behaviour
The generated spreadsheet would have a user_friendly name for the Biomaterial ID that specifies the type of biomaterial i.e. Donor Organism ID, Specimen from Organism ID, Cell suspension ID, Cell line ID, Organoid ID, Imaged specimen ID and the type of protocol Aggregate generation protocol, Collection protocol, Differentiation protocol, Dissociation protocol, Enrichment protocol, iPSC induction protocol, Treatment protocol, Imaging preparation protocol, Imaging Protocol, Library preparation protocol, Sequencing protocol, Analysis protocol.
Screenshots / Logs
What is shown in the downloaded spreadsheet from DCP. Private Zenhub Image
Describe the bug
When I download a generated spreadsheet from DCP the user_friendly names I get for all biomaterials and protocols is a generic
Biomaterial ID
andProtocol ID
instead ofDONOR ORGANISM ID
andCOLLECTION PROTOCOL ID
I have from the template that we use.There can be multiple columns with the same name when we have input biomaterial into one entity or multiple protocols applied to one entity.
To Reproduce
Biomaterial ID
orProtocol ID
Expected behaviour
The generated spreadsheet would have a user_friendly name for the Biomaterial ID that specifies the type of biomaterial i.e.
Donor Organism ID
,Specimen from Organism ID
,Cell suspension ID
,Cell line ID
,Organoid ID
,Imaged specimen ID
and the type of protocolAggregate generation protocol
,Collection protocol
,Differentiation protocol
,Dissociation protocol
,Enrichment protocol
,iPSC induction protocol
,Treatment protocol
,Imaging preparation protocol
,Imaging Protocol
,Library preparation protocol
,Sequencing protocol
,Analysis protocol
.Screenshots / Logs
What is shown in the downloaded spreadsheet from DCP.
Private Zenhub Image
What is shown in the template that we use.
Private Zenhub Image
Links
no links
Environment
Browser
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