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Eamxx-Mam4xx Nucleation Demo

This repo is a set of utility scripts and working notes for assembling a simulation that demonstrates the nucleation of H2SO4 gas into SO4 aerosol in the aitken mode within EAMxx.

E3SM Tests

These might be good to run to make sure you've installed E3SM correctly, and should work under EAMxx/SCREAM builds configured with CIME.

  • SMS_D.ne4pg2_oQU480.F2010

Compsets

  • SMS_D_Ld1_P96x1.ne4pg2_ne4pg2.F2010-SCREAMv1

Here's what all the symbols mean:

  • D indicates a Debug build, and can be removed for optimized builds
  • L indicates the length of the simulation (e.g. Ld1 means "run for 1 day"). The default simulation length is 5 days.
  • P indicates the number of processors and threads to use, delimited by x. So P96x1 means 96 MPI processes and a single thread per process. Note that the ne4 grid has 96 = 4x4x6 spectral elements.
  • ne4pg2_ne4pg2 here indicates that the ne4 grid is to be used for dynamics and the pg2 grid for physics, in contrast to ne4_ne4, which uses the ne4 grid for both.
  • F2010-SCREAMv1 is the compset (or set of components) corresponding to the SCREAM atmospheric model with the other components (ocean, land, land/sea ice, etc) supplied by data files.

Files of interest:

  • config_machines.xml: a little auxiliary machine file for Jeff's Linux workstation
  • add_aerosol_ics: a Python script that adds aerosol tracers to the default F-case initial conditions file (requires the Python netCDF4 module)
  • create_nuc_case: a Bash script that generates and builds the nucleation demo case

How to Build and Run the Demo

These commands download any needed simulation data and then run the case:

./create_nuc_case
cd F2010-SCREAMv1.ne4pg2_ne4pg2.1x16.mam4xx_nuc
./case.submit --no-batch

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