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README.Rmd
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README.Rmd
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---
title: "dyndimred"
output: github_document
---
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[![R build status](https://github.com/dynverse/dyndimred/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/dyndimred/actions)
[![Codecov test coverage](https://codecov.io/gh/dynverse/dyndimred/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/dyndimred?branch=master)
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[**ℹ️ Tutorials**](https://dynverse.org)
```{r setup, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
out.width = "100%",
fig.path = "man/figures/",
message = FALSE,
dpi = 300
)
set.seed(1)
library(tidyverse)
```
# `dyndimred`: Dimensionality Reduction Methods in a Common Format
Provides a common interface for applying dimensionality reduction methods,
such as PCA, ICA, diffusion maps, LLE, t-SNE, and umap. Just plug in a matrix
and get a dimensionality reduction!
## Latest changes
Check out `news(package = "dyndimred")` or [NEWS.md](NEWS.md) for a full list of changes.
<!-- This section gets automatically generated from inst/NEWS.md, and also generates inst/NEWS -->
```{r news, echo=FALSE, results="asis"}
cat(dynutils::recent_news())
```
## Dynverse dependencies
<!-- Generated by "update_dependency_graphs.R" in the main dynverse repo -->
![](man/figures/dependencies.png)