diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..ec2b5ad --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,46 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/master/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: [push, pull_request] + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + # - {os: macOS-latest, r: 'release'} + # - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + + steps: + - uses: actions/checkout@v2 + + - uses: eWaterCycle/setup-singularity@v6 + with: + singularity-version: 3.7.1 + + - uses: r-lib/actions/setup-pandoc@v1 + + - uses: r-lib/actions/setup-r@v1 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v1 + with: + extra-packages: rcmdcheck + + - uses: r-lib/actions/check-r-package@v1 diff --git a/.github/workflows/R-CMD-check.yml b/.github/workflows/R-CMD-check.yml deleted file mode 100644 index 162f612..0000000 --- a/.github/workflows/R-CMD-check.yml +++ /dev/null @@ -1,90 +0,0 @@ -on: - push: - branches: - - master - - devel - pull_request: - branches: - - master - schedule: - - cron: "0 0 * * 1" - -name: R-CMD-check - -jobs: - R-CMD-check: - runs-on: ${{ matrix.config.os }} - if: "!contains(github.event.head_commit.message, 'ci skip')" - name: ${{ matrix.config.os }} (${{ matrix.config.r }}) - - strategy: - fail-fast: false - matrix: - config: - #- {os: windows-latest, r: 'release'} - #- {os: macOS-latest, r: 'release'} - - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - - env: - R_REMOTES_NO_ERRORS_FROM_WARNINGS: true - RSPM: ${{ matrix.config.rspm }} - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - - steps: - - uses: actions/checkout@v2 - - - uses: eWaterCycle/setup-singularity@v6 - with: - singularity-version: 3.7.1 - - - uses: r-lib/actions/setup-r@v1 - with: - r-version: ${{ matrix.config.r }} - - - uses: r-lib/actions/setup-pandoc@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Restore R package cache - if: runner.os != 'Windows' - uses: actions/cache@v2 - with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install system dependencies - if: runner.os == 'Linux' - run: | - while read -r cmd - do - eval sudo $cmd - done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') - - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - remotes::install_cran("rcmdcheck") - shell: Rscript {0} - - - name: Check - env: - GA_OS: ${{ runner.os }} - _R_CHECK_CRAN_INCOMING_REMOTE_: false - run: | - options(crayon.enabled = TRUE) - rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") - shell: Rscript {0} - - - name: Upload check results - if: failure() - uses: actions/upload-artifact@main - with: - name: ${{ runner.os }}-r${{ matrix.config.r }}-results - path: check diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..6cf7036 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,30 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/master/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: [push, pull_request] + +name: test-coverage + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v2 + + - uses: eWaterCycle/setup-singularity@v6 + with: + singularity-version: 3.7.1 + + - uses: r-lib/actions/setup-r@v1 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v1 + with: + extra-packages: covr + + - name: Test coverage + run: covr::codecov() + shell: Rscript {0} diff --git a/.github/workflows/test_coverage.yml b/.github/workflows/test_coverage.yml deleted file mode 100644 index 941cc18..0000000 --- a/.github/workflows/test_coverage.yml +++ /dev/null @@ -1,64 +0,0 @@ -on: - push: - branches: - - master - - devel - pull_request: - branches: - - master - -name: test-coverage - -jobs: - test-coverage: - runs-on: ubuntu-20.04 - if: "!contains(github.event.head_commit.message, 'ci skip')" - - env: - RSPM: ${{ matrix.config.rspm }} - - steps: - - uses: actions/checkout@v2 - - - uses: eWaterCycle/setup-singularity@v6 - with: - singularity-version: 3.7.1 - - - uses: r-lib/actions/setup-r@v1 - with: - r-version: ${{ matrix.config.r }} - - - uses: r-lib/actions/setup-pandoc@v1 - - - name: Query dependencies - run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") - shell: Rscript {0} - - - name: Restore R package cache - if: runner.os != 'Windows' - uses: actions/cache@v2 - with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install system dependencies - if: runner.os == 'Linux' - run: | - while read -r cmd - do - eval sudo $cmd - done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') - - - name: Install dependencies - run: | - remotes::install_deps(dependencies = TRUE) - shell: Rscript {0} - - - name: Test coverage - run: covr::codecov() - shell: Rscript {0} -