README.Rmd

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# babelwhale: talk to docker and singularity from R


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Specify docker or singularity

```{r}
library(babelwhale)
config <- create_docker_config()
set_default_config(config)
```

Run a command in a container

```{r}
run("alpine", "echo", c("hello"))
```

Get a file from a container
```{r}
read_file("alpine", "/etc/alpine-release")
```

## Latest changes

Check out `news(package = "dynutils")` or [NEWS.md](NEWS.md) for a full list of changes.

<!-- This section gets automatically generated from NEWS.md -->

```{r news, echo=FALSE, results="asis"}
cat(dynutils::recent_news())
```