vimrc.txt

set guifont=Monospace\ 9
syntax on
colorscheme gruvbox
if $TMUX == ''
    set clipboard+=unnamed
endif
" set clipboard=unnamed
set background=dark
set term=screen-256color

" Strip trailing whitespace from file when saving
autocmd BufWritePre *.py,*.cc,*.hh normal m`:%s/\s\+$//e ``
autocmd BufWritePre *.py,*.cc,*.hh :%s/\s\+$//e

:set cursorline
:set cursorcolumn

imap jk <Esc>
nnoremap <C-L> :nh
set listchars=tab:>-,extends:>,precedes:<
set tabstop=2
set shiftwidth=2
set noexpandtab
set cindent
set list
set splitbelow
set splitright
set number
set hlsearch

" Enable folding
set foldmethod=indent
set foldlevel=99
" Enable folding with spacebar
nnoremap <space> za

" Highlight bad indentation characters
highlight BadIndent ctermbg=gray guibg=wheat
au BufRead,BufNewFile *.cc,*.hh 2match BadIndent /^\t* [\t ]*/
autocmd BufWinEnter *.cc,*.hh 2match BadIndent /^\t* [\t ]*/
au BufRead,BufNewFile *.py,*.pyw 2match BadIndent /^ *\t[\t ]*/
autocmd BufWinEnter *.py,*.pyw 2match BadIndent /^ *\t[\t ]*/

" What to use for an indent.$
" This will affect Ctrl-T and 'autoindent'.$
" Python: 4 spaces$
" C: tabs (pre-existing files) or 4 spaces (new files)$
au BufRead,BufNewFile *.py,*pyw set shiftwidth=4
au BufRead,BufNewFile *.py,*pyw set tabstop=4
au BufRead,BufNewFile *.py,*.pyw set expandtab
au BufRead,BufNewFile *.py,*.pyw set autoindent
autocmd BufWritePre *.py normal m`:%s/\s\+$//e ``

execute pathogen#infect()

set syntax=snakemake
au BufNewFile,BufRead Snakefile set syntax=snakemake
au BufNewFile,BufRead *.rules set syntax=snakemake
au BufNewFile,BufRead *.snakefile set syntax=snakemake
au BufNewFile,BufRead Snakefile set syntax=snakemake

set hidden
set history=100