diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.html index 0720e9c22e..d58126a3d6 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/IMatcher.html @@ -80,7 +80,7 @@

Interface IMatcher<ModelClass,
All Known Implementing Classes:
-
AddAlignmentExtensions, AddAlignmentMatcher, AdditionalConfidenceByFunction, AdditionalConfidenceFilter, AddNegativesRandomly, AddNegativesRandomlyAbsolute, AddNegativesRandomlyOneOneAssumption, AddNegativesRandomlyShare, AddNegativesViaAlignment, AddNegativesViaMatcher, AddPositivesWithReference, AlignmentSaveMatcher, AnonymousNodeFilter, BackgroundMatcher, BackgroundMatcherStandAlone, BadHostsFilter, BagOfWordsSetSimilarityFilter, BaseFilterWithSetComparison, BaselineStringMatcher, BoundedPathMatching, CardinalityFilter, CommonPropertiesFilter, ConfidenceCombiner, ConfidenceCurvatureFilter, ConfidenceFilter, Doc2vecModelMatcher, DocumentSimilarityBase, ExactStringMatcher, FileSaveMatcher, ForwardAlwaysMatcher, ForwardMatcher, HighPrecisionMatcher, HungarianExtractor, LLMBase, LLMBinaryFilter, LLMChooseGivenEntityFilter, LogMapRepairFilter, MachineLearningScikitFilter, MachineLearningWEKAFilter, MatchClassBasedOnInstances, MatcherCLI, MatcherCLIFromFile, MatcherHTTPCall, MatcherPipelineYAAAJena, MatcherPipelineYAAAJenaConstructor, MatcherPipelineYAAAOwlApi, MatcherYAAAJena, MatcherYAAAOwlApi, MatchPropBasedOnClass, MatchPropBasedOnInstances, MaxWeightBipartiteExtractor, MixedTypFilter, NaiveAscendingExtractor, NaiveDescendingExtractor, NtoMCorrespondenceFilter, OpenEAMatcher, ParisMatcher, ReferenceMatcher, ReflexiveCorrespondenceFilter, RelationTypeFineTuner, RelationTypePredictor, ScalableStringProcessingMatcher, ScaleAdditionalConfidence, ScaleConfidence, SentenceTransformersFineTuner, SentenceTransformersMatcher, SimilarHierarchyFilter, SimilarNeighboursFilter, SimilarTypeFilter, SimpleStringMatcher, StopwordExtraction, StringMatcher, SynonymTextMatcher, TopXFilter, TrainingAlignmentGenerator, TransformersBase, TransformersBaseFineTuner, TransformersFilter, TransformersFineTuner, TransformersFineTunerHpSearch, TypeFilter, UriInterfaceWrapper, VectorSpaceModelMatcher
+
AddAlignmentExtensions, AddAlignmentMatcher, AdditionalConfidenceByFunction, AdditionalConfidenceFilter, AddNegativesRandomly, AddNegativesRandomlyAbsolute, AddNegativesRandomlyOneOneAssumption, AddNegativesRandomlyShare, AddNegativesViaAlignment, AddNegativesViaMatcher, AddPositivesWithReference, AlignmentSaveMatcher, AnonymousNodeFilter, BackgroundMatcher, BackgroundMatcherStandAlone, BadHostsFilter, BagOfWordsSetSimilarityFilter, BaseFilterWithSetComparison, BaselineStringMatcher, BoundedPathMatching, CardinalityFilter, CommonPropertiesFilter, ConfidenceCombiner, ConfidenceCurvatureFilter, ConfidenceFilter, Doc2vecModelMatcher, DocumentSimilarityBase, ExactStringMatcher, FileSaveMatcher, ForwardAlwaysMatcher, ForwardMatcher, HighPrecisionMatcher, HungarianExtractor, LLMBase, LLMBinaryFilter, LLMChooseGivenEntityFilter, LogMapRepairFilter, MachineLearningScikitFilter, MachineLearningWEKAFilter, MatchClassBasedOnInstances, MatcherCLI, MatcherCLIFromFile, MatcherDockerFile, MatcherHTTPCall, MatcherPipelineYAAAJena, MatcherPipelineYAAAJenaConstructor, MatcherPipelineYAAAOwlApi, MatcherYAAAJena, MatcherYAAAOwlApi, MatchPropBasedOnClass, MatchPropBasedOnInstances, MaxWeightBipartiteExtractor, MixedTypFilter, NaiveAscendingExtractor, NaiveDescendingExtractor, NtoMCorrespondenceFilter, OpenEAMatcher, ParisMatcher, ReferenceMatcher, ReflexiveCorrespondenceFilter, RelationTypeFineTuner, RelationTypePredictor, ScalableStringProcessingMatcher, ScaleAdditionalConfidence, ScaleConfidence, SentenceTransformersFineTuner, SentenceTransformersMatcher, SimilarHierarchyFilter, SimilarNeighboursFilter, SimilarTypeFilter, SimpleStringMatcher, StopwordExtraction, StringMatcher, SynonymTextMatcher, TopXFilter, TrainingAlignmentGenerator, TransformersBase, TransformersBaseFineTuner, TransformersFilter, TransformersFineTuner, TransformersFineTunerHpSearch, TypeFilter, UriInterfaceWrapper, VectorSpaceModelMatcher
public interface IMatcher<ModelClass,AlignmentClass,ParameterClass>
diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html index c2a0d22b78..91ba06c705 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/class-use/IMatcher.html @@ -56,57 +56,59 @@

Description
de.uni_mannheim.informatik.dws.melt.matching_base.external.cli
 
-
de.uni_mannheim.informatik.dws.melt.matching_base.external.http
+
de.uni_mannheim.informatik.dws.melt.matching_base.external.docker
 
-
de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer
+
de.uni_mannheim.informatik.dws.melt.matching_base.external.http
 
-
de.uni_mannheim.informatik.dws.melt.matching_eval.matchers
+
de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer
 
-
de.uni_mannheim.informatik.dws.melt.matching_eval.util
+
de.uni_mannheim.informatik.dws.melt.matching_eval.matchers
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena
+
de.uni_mannheim.informatik.dws.melt.matching_eval.util
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel
+
de.uni_mannheim.informatik.dws.melt.matching_jena
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher
-
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale
+
 
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher
+
This package contains preconfigured matcher content that can be used in matching pipelines or as an example/reference for a new background-based matcher.
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter
-
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction
-
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter
+
 
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction
+
This package contains mapping extraction approaches as shown in Analyzing Mapping Extraction Approaches - C.
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance
-
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel
 
-
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives
 
-
de.uni_mannheim.informatik.dws.melt.matching_ml.python
+
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper
 
-
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
+
de.uni_mannheim.informatik.dws.melt.matching_ml.python
 
-
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction
+
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
 
-
de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea
+
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction
 
-
de.uni_mannheim.informatik.dws.melt.matching_owlapi
+
de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea
 
-
de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap
+
de.uni_mannheim.informatik.dws.melt.matching_owlapi
 
+
de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap
+
 
+ +

  • Uses of IMatcher in de.uni_mannheim.informatik.dws.melt.matching_base.external.http

    Classes in de.uni_mannheim.informatik.dws.melt.matching_base.external.http that implement IMatcher
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.html index d57117b391..41b8bfea5a 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/MatcherDockerFile.html @@ -81,12 +81,12 @@

    Class MatcherDockerFile

    All Implemented Interfaces:
    -
    eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge, Closeable, AutoCloseable
    +
    IMatcher<URL,URL,URL>, eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge, eu.sealsproject.platform.res.tool.api.IPlugin, eu.sealsproject.platform.res.tool.api.IToolBridge, Closeable, AutoCloseable
    public class MatcherDockerFile extends MatcherURL -implements Closeable
    +implements Closeable, IMatcher<URL,URL,URL>
    • This matcher creates a docker container based on a given docker image name. Within this container a matcher server should be started. Therefore it will use the MatcherHTTPCall internally to run the matcher. @@ -95,12 +95,12 @@

    Class MatcherDockerFile

    <dependency> <groupId>com.github.docker-java</groupId> <artifactId>docker-java-core</artifactId> - <version>3.2.7</version><!--maybe update version--> + <version>3.3.3</version><!--maybe update version--> </dependency> <dependency> <groupId>com.github.docker-java</groupId> <artifactId>docker-java-transport-httpclient5</artifactId> - <version>3.2.7</version><!--maybe update version--> + <version>3.3.3</version><!--maybe update version--> </dependency> With this in place everything should work.
    @@ -133,42 +133,48 @@

    Field Summary

    private com.github.dockerjava.api.DockerClient
    dockerClient
     
    -
    private boolean
    -
    freshInstance
    +
    private List<String>
    +
    environmentVariables
     
    -
    private int
    -
    hostPort
    +
    private boolean
    +
    freshInstance
     
    -
    private String
    -
    imageName
    +
    private int
    +
    hostPort
     
    -
    private int
    -
    initialWaitingTimeInSeconds
    +
    private String
    +
    imageName
     
    -
    private static final boolean
    -
    IS_WINDOWS
    +
    private int
    +
    initialWaitingTimeInSeconds
     
    -
    private DockerLogCallback
    -
    logCallback
    -
    +
    private static final boolean
    +
    IS_WINDOWS
    +
     
    +
    private DockerLogCallback
    +
    logCallback
    +
    The callback for log entries.
    -
    private static final org.slf4j.Logger
    -
    LOGGER
    -
     
    -
    private static final com.fasterxml.jackson.databind.ObjectMapper
    -
    mapper
    +
    private static final org.slf4j.Logger
    +
    LOGGER
     
    -
    private static final String
    -
    OS_NAME
    +
    private static final com.fasterxml.jackson.databind.ObjectMapper
    +
    mapper
     
    -
    private boolean
    -
    runOnlyLocalhost
    -
    +
    private static final String
    +
    OS_NAME
    +
     
    +
    private boolean
    +
    runOnlyLocalhost
    +
    If true, the container binds only on localhost instead of all interfaces.
    -
    private int
    -
    socketTimeout
    +
    private int
    +
    socketTimeout
    +
     
    +
    private List<com.github.dockerjava.api.model.Bind>
    +
    volumeMounted
     
    @@ -221,6 +227,26 @@

    Method Summary

    Method
    Description
    void
    +
    addEnvironmentVariable(String environmentVariable)
    +
    +
    This method will add one environment variable in form of e.g.
    +
    +
    void
    +
    addEnvironmentVariableCudaVisibleDevices(String visibleDevicesValue)
    +
    +
    This method will add one environment variable where the key is "CUDA_VISIBLE_DEVICES".
    +
    +
    void
    +
    addVolumeMounted(com.github.dockerjava.api.model.Bind volume)
    +
    +
    Adds a volume mount specification represented by the corresponding object.
    +
    +
    void
    +
    addVolumeMounted(String volume)
    +
    +
    Adds a volume mount specification represented as string e.g.
    +
    +
    void
    close()
     
    String
    @@ -243,38 +269,48 @@

    Method Summary

    static com.github.dockerjava.core.DefaultDockerClientConfig.Builder
    getDockerConfigBuilder()
     
    -
    private int
    -
    getFreePortOnHost()
    +
    List<String>
    +
    getEnvironmentVariables()
    -
    Returns a free port number on localhost.
    +
    Return the environment variables which are set for the container.
    -
    int
    -
    getHostPort()
    +
    private int
    +
    getFreePortOnHost()
    -
    The port on which the matching service is avilable.
    +
    Returns a free port number on localhost.
    -
    String
    -
    getImageName()
    +
    int
    +
    getHostPort()
    -
    Retunrs the image name which is used by this matcher.
    +
    The port on which the matching service is avilable.
    -
    static String
    -
    getImageNameFromFileContent(File dockerFile)
    -
    -
    Extracts the image name from the docker file content.
    +
    String
    +
    getImageName()
    +
    +
    Retunrs the image name which is used by this matcher.
    static String
    -
    getImageNameFromFileName(File dockerFile)
    +
    getImageNameFromFileContent(File dockerFile)
    +
    Extracts the image name from the docker file content.
    +
    +
    static String
    +
    getImageNameFromFileName(File dockerFile)
    +
    The naming convention of the MELT Web Docker files is such that the files carry the name of the image with an optional postfix of '-latest' such as 'my_image-latest.tar.gz'
    -
    int
    -
    getInitialWaitingTimeInSeconds()
    -
     
    -
    private static org.apache.commons.compress.archivers.ArchiveInputStream
    -
    getUncompressedStream(InputStream inputStream)
    -
     
    +
    int
    +
    getInitialWaitingTimeInSeconds()
    +
     
    +
    private static org.apache.commons.compress.archivers.ArchiveInputStream
    +
    getUncompressedStream(InputStream inputStream)
    +
     
    +
    List<com.github.dockerjava.api.model.Bind>
    +
    getVolumeMounted()
    +
    +
    Return all mounted volumes as a list of Bind objects.
    +
    boolean
    isFreshInstance()
    @@ -312,6 +348,19 @@

    Method Summary

    Match two ontologies / knowledge graphs together and returns an alignment.
    +
    URL
    +
    match(URL source, + URL target, + URL inputAlignment, + URL parameters)
    +
    +
    Aligns two ontologies/knowledge graphs given as the first and second parameter.
    +
    +
    void
    +
    setEnvironmentVariables(List<String> environmentVariables)
    +
    +
    Set the environment variables which are used for the container.
    +
    void
    setInitialWaitingTimeInSeconds(int initialWaitingTimeInSeconds)
     
    @@ -322,15 +371,20 @@

    Method Summary

    Sets the timeouts for the HTTP call which happens when the docker container is started and the call to the service is executed.
    -
    private void
    -
    startContainer()
    -
     
    +
    void
    +
    setVolumeMounted(List<com.github.dockerjava.api.model.Bind> volumeMounted)
    +
    +
    Set the list of bindings.
    +
    private void
    -
    stopContainer()
    +
    startContainer()
     
    -
    String
    -
    toString()
    +
    private void
    +
    stopContainer()
     
    +
    String
    +
    toString()
    +
     
    @@ -438,6 +492,18 @@

    hostPort

  • +
    +

    volumeMounted

    +
    private List<com.github.dockerjava.api.model.Bind> volumeMounted
    +
    +
    • +
  • +
    +

    environmentVariables

    +
    private List<String> environmentVariables
    +
    +
    • +

  • freshInstance

    private boolean freshInstance
    @@ -603,6 +669,38 @@

    match

  • +
    +

    match

    +
    public URL match(URL source, + URL target, + URL inputAlignment, + URL parameters) + throws Exception
    +
    Description copied from interface: IMatcher
    +
    Aligns two ontologies/knowledge graphs given as the first and second parameter. + An additional input alignment can be given as well as parameters which further define how and what to match. + In case inputAlignment or parameters is not used, making them to the Object class, + will required no additional transformations of these objects (no overhead).
    +
    +
    Specified by:
    +
    match in interface IMatcher<URL,URL,URL>
    +
    Parameters:
    +
    source - this object represents the source ontology/knowledge graph
    +
    target - this object represents the target ontology/knowledge graph
    +
    inputAlignment - this object represents the input alignment.
    +
    parameters - object representing additional parameters. + Only add to this object and do not create a new Object like parameters= new ...() + because otherwise the parameters are lost (java ist call by value). + Sensible classes are Properties (preferred), Map<String, Object> or any similar data structure. + Some already specified keys (strings) can be found at ParameterConfigKeys.
    +
    Returns:
    +
    the resulting alignment of the matching process.
    +
    Throws:
    +
    Exception - any exception which occurs during matching
    +
    +
    +
    • +

  • getContainerPort

    private int getContainerPort()
    @@ -719,6 +817,97 @@

    isFreshInstance

  • +
    +

    getVolumeMounted

    +
    public List<com.github.dockerjava.api.model.Bind> getVolumeMounted()
    +
    Return all mounted volumes as a list of Bind objects.
    +
    +
    Returns:
    +
    a list of Bind objects.
    +
    +
    +
    • +
  • +
    +

    setVolumeMounted

    +
    public void setVolumeMounted(List<com.github.dockerjava.api.model.Bind> volumeMounted)
    +
    Set the list of bindings. This will override all previous bindings.
    +
    +
    Parameters:
    +
    volumeMounted - the list of bindings which should not be null.
    +
    +
    +
    • +
  • +
    +

    addVolumeMounted

    +
    public void addVolumeMounted(com.github.dockerjava.api.model.Bind volume)
    +
    Adds a volume mount specification represented by the corresponding object.
    +
    +
    Parameters:
    +
    volume - the corresponding bin object
    +
    +
    +
    • +
  • +
    +

    addVolumeMounted

    +
    public void addVolumeMounted(String volume)
    +
    Adds a volume mount specification represented as string e.g. /host:/container:ro.
    +
    +
    Parameters:
    +
    volume - the specification, e.g. /host:/container:ro
    +
    +
    +
    • +
  • +
    +

    getEnvironmentVariables

    +
    public List<String> getEnvironmentVariables()
    +
    Return the environment variables which are set for the container.
    +
    +
    Returns:
    +
    the environment variables which are set for the container.
    +
    +
    +
    • +
  • +
    +

    setEnvironmentVariables

    +
    public void setEnvironmentVariables(List<String> environmentVariables)
    +
    Set the environment variables which are used for the container. + This is a list of environemtn variables in form of e.g. "CUDA_VISIBLE_DEVICES=1"
    +
    +
    Parameters:
    +
    environmentVariables - a list of environemtn variables in form of e.g. "CUDA_VISIBLE_DEVICES=1"
    +
    +
    +
    • +
  • +
    +

    addEnvironmentVariable

    +
    public void addEnvironmentVariable(String environmentVariable)
    +
    This method will add one environment variable in form of e.g. "CUDA_VISIBLE_DEVICES=1".
    +
    +
    Parameters:
    +
    environmentVariable - one environment variable in form of e.g. "CUDA_VISIBLE_DEVICES=1".
    +
    +
    +
    • +
  • +
    +

    addEnvironmentVariableCudaVisibleDevices

    +
    public void addEnvironmentVariableCudaVisibleDevices(String visibleDevicesValue)
    +
    This method will add one environment variable where the key is "CUDA_VISIBLE_DEVICES". + The key does not need to be repreat. Just provide the value which can either be one number e.g. 2 (0-based) + or a list of numbers (gpus) like "1,2,3".
    +
    +
    Parameters:
    +
    visibleDevicesValue - provide the value which can either be one number e.g. 2 (0-based) or a list of numbers (gpus) like "1,2,3".
    +
    +
    +
    • +

  • toString

    public String toString()
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/package-tree.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/package-tree.html index ccef202916..3ec3f2f5cf 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/package-tree.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/external/docker/package-tree.html @@ -63,7 +63,7 @@

    Class Hierarchy

    • de.uni_mannheim.informatik.dws.melt.matching_base.MatcherURL (implements eu.sealsproject.platform.res.domain.omt.IOntologyMatchingToolBridge)
        -
      • de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile (implements java.io.Closeable)
        • +
      • de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile (implements java.io.Closeable, de.uni_mannheim.informatik.dws.melt.matching_base.IMatcher<ModelClass,AlignmentClass,ParameterClass>)
    diff --git a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/package-use.html b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/package-use.html index f49e4b0bae..34cdbd34c4 100644 --- a/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/package-use.html +++ b/javadoc_latest/de/uni_mannheim/informatik/dws/melt/matching_base/package-use.html @@ -182,8 +182,12 @@

    Class
    Description
    -
    MatcherURL
    +
    IMatcher
    +
    Generic matcher interface which just implements one method called match.
    +
    +
    MatcherURL
    +
    RawMatcher which implements the minimal interface for being executed under the SEALS platform.
    diff --git a/javadoc_latest/index-all.html b/javadoc_latest/index-all.html index 2520af8b0e..baf45b6ba7 100644 --- a/javadoc_latest/index-all.html +++ b/javadoc_latest/index-all.html @@ -344,10 +344,18 @@

    A

     
    addElement(DcjsElement) - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DashboardBuilder
     
    +
    addEnvironmentVariable(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    This method will add one environment variable in form of e.g.
    +
    addEnvironmentVariable(String, String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ExternalProcess
    Adds an environemtn varibale to the environment of the started process.
    +
    addEnvironmentVariableCudaVisibleDevices(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    This method will add one environment variable where the key is "CUDA_VISIBLE_DEVICES".
    +
    addEnvironmentVariableFromCondaActivate(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process.ExternalProcess
    When starting a python process within a conda virtual environment, it is usually necessary to run conda activate env-name.
    @@ -739,6 +747,14 @@

    A

    addTransformer(TypeTransformer<?, ?>) - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer.TypeTransformerRegistry
     
    +
    addVolumeMounted(Bind) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Adds a volume mount specification represented by the corresponding object.
    +
    +
    addVolumeMounted(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Adds a volume mount specification represented as string e.g.
    +
    AGGREGATES_METHOD - Enum constant in enum de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.DefaultExtensions.OmvMetadata
    #Method denoting the aggregation of the result of several methods
    @@ -4037,6 +4053,8 @@

    E

    The variables in the environment which are used when starting an external process.
    +
    environmentVariables - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
     
    epochs - Variable in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
    The epochs to be used for the training.
    @@ -6137,6 +6155,10 @@

    G

    getEnumerationLabel(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.LLMChooseGivenEntityFilter
     
    +
    getEnvironmentVariables() - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Return the environment variables which are set for the container.
    +
    getEpochs() - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    getErroneousReport() - Method in class de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.alignmentanalyzer.AlignmentAnalyzerResult
    @@ -8516,6 +8538,10 @@

    G

    Returns the full vocabulary of the specified model as HashSet (e.g.
    +
    getVolumeMounted() - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Return all mounted volumes as a list of Bind objects.
    +
    getWeight() - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction.MwbEdge
     
    getWelcomeMessage() - Static method in class de.uni_mannheim.informatik.dws.melt.matching_base.MeltUtil
    @@ -11961,6 +11987,8 @@

    M

     
    match(URL, URL, URL, URL) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.MatcherCLI
     
    +
    match(URL, URL, URL, URL) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
     
    match(URL, URL, URL, URL) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.http.MatcherHTTPCall
     
    match(List<Object>, Alignment, Object) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.FamerClustering
    @@ -16909,6 +16937,10 @@

    S

     
    setEntityTwo(String) - Method in class de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence
     
    +
    setEnvironmentVariables(List<String>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Set the environment variables which are used for the container.
    +
    setEpochs(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    setEulerian(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyEdge
    @@ -17536,6 +17568,10 @@

    S

     
    setVersion(String) - Method in class de.uni_mannheim.informatik.dws.melt.matching_assembly.SealsDescriptorHandler
     
    +
    setVolumeMounted(List<Bind>) - Method in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
    +
    Set the list of bindings.
    +
    setWindowSize(int) - Method in class de.uni_mannheim.informatik.dws.melt.matching_ml.python.Word2VecConfiguration
     
    setWithRepetitions(boolean) - Method in class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives.AddNegativesRandomly
    @@ -20681,6 +20717,8 @@

    V

    versionLine - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.seals.MatcherSeals.CheckJavaVersionConsumer
     
    +
    volumeMounted - Variable in class de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile
    +
     
    VOSClusteringTechnique - Class in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering
     
    VOSClusteringTechnique(Network, double) - Constructor for class de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering.VOSClusteringTechnique
    diff --git a/javadoc_latest/member-search-index.js b/javadoc_latest/member-search-index.js index c97d86404e..3092e408c0 100644 --- a/javadoc_latest/member-search-index.js +++ b/javadoc_latest/member-search-index.js @@ -1 +1 @@ -memberSearchIndex = [{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations","c":"StringOperations.AbbreviationHandler","l":"AbbreviationHandler()","u":"%3Cinit%3E()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"SetSimilarity","l":"ABSOLUTE"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance","c":"SimilarHierarchyFilterApproach","l":"ABSOLUTE_MATCHES"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer","c":"AbstractTypeTransformer","l":"AbstractTypeTransformer(Class, Class)","u":"%3Cinit%3E(java.lang.Class,java.lang.Class)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.hobbit","c":"HobbitAPI","l":"accessToken"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersOptimizingMetric","l":"ACCURACY"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.persistence","c":"PersistenceService","l":"activeDatabases"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony","c":"AgonyQueue","l":"add(AgonyNode)","u":"add(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony.AgonyNode)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.nlp","c":"PorterStemmer","l":"add(char)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.nlp","c":"PorterStemmer","l":"add(char[], int)","u":"add(char[],int)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.util","c":"Counter","l":"add(Collection)","u":"add(java.util.Collection)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util","c":"AnalyticalAlignmentInformation","l":"add(Correspondence, String, String)","u":"add(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Correspondence,java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity","c":"MatcherSimilarity","l":"add(ExecutionResult, ExecutionResult, double)","u":"add(de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult,de.uni_mannheim.informatik.dws.melt.matching_eval.ExecutionResult,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"TransitiveClosure","l":"add(Iterable)","u":"add(java.lang.Iterable)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.explainer","c":"ExplainerResourceProperty","l":"add(String, Property)","u":"add(java.lang.String,org.apache.jena.rdf.model.Property)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"add(String, String)","u":"add(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"SSSOMPrefixMap","l":"add(String, String)","u":"add(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"add(String, String, CorrespondenceRelation)","u":"add(java.lang.String,java.lang.String,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.CorrespondenceRelation)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"add(String, String, double)","u":"add(java.lang.String,java.lang.String,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"add(String, String, double, CorrespondenceRelation)","u":"add(java.lang.String,java.lang.String,double,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.CorrespondenceRelation)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"add(String, String, double, CorrespondenceRelation, Map)","u":"add(java.lang.String,java.lang.String,double,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.CorrespondenceRelation,java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.util","c":"Counter","l":"add(T)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"Counter","l":"add(T)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.util","c":"Counter","l":"add(T, int)","u":"add(T,int)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"Counter","l":"add(T, int)","u":"add(T,int)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"TransitiveClosure","l":"add(T...)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_data","c":"TrackNameLookup","l":"add(Track, String...)","u":"add(de.uni_mannheim.informatik.dws.melt.matching_data.Track,java.lang.String...)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"TransitiveClosure","l":"add(TransitiveClosure)","u":"add(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.TransitiveClosure)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalConfidence(Class, double)","u":"addAdditionalConfidence(java.lang.Class,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalConfidence(String, double)","u":"addAdditionalConfidence(java.lang.String,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"addAdditionalConfidence(String, String, Class, double)","u":"addAdditionalConfidence(java.lang.String,java.lang.String,java.lang.Class,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"addAdditionalConfidenceAndExplanation(String, String, Class, double, String)","u":"addAdditionalConfidenceAndExplanation(java.lang.String,java.lang.String,java.lang.Class,double,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalConfidenceIfHigher(Class, double)","u":"addAdditionalConfidenceIfHigher(java.lang.Class,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalConfidenceIfHigher(String, double)","u":"addAdditionalConfidenceIfHigher(java.lang.String,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalExplanation(Class, String)","u":"addAdditionalExplanation(java.lang.Class,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"addAdditionalExplanation(String, String)","u":"addAdditionalExplanation(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"addAdditionalExplanation(String, String, Class, String)","u":"addAdditionalExplanation(java.lang.String,java.lang.String,java.lang.Class,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher","c":"BackgroundMatcher","l":"addAlignmentExtensions()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentExtensions","l":"AddAlignmentExtensions(Map)","u":"%3Cinit%3E(java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentExtensions","l":"AddAlignmentExtensions(Object...)","u":"%3Cinit%3E(java.lang.Object...)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentMatcher","l":"AddAlignmentMatcher()","u":"%3Cinit%3E()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentMatcher","l":"AddAlignmentMatcher(Alignment)","u":"%3Cinit%3E(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentMatcher","l":"AddAlignmentMatcher(File)","u":"%3Cinit%3E(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"AddAlignmentMatcher","l":"AddAlignmentMatcher(String)","u":"%3Cinit%3E(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"Counter","l":"addAll(Counter)","u":"addAll(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.Counter)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util","c":"AnalyticalAlignmentInformation","l":"addAll(Iterable, HashMap)","u":"addAll(java.lang.Iterable,java.util.HashMap)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.util","c":"AnalyticalAlignmentInformation","l":"addAll(Iterable, String, String)","u":"addAll(java.lang.Iterable,java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"Counter","l":"addAll(Iterable)","u":"addAll(java.lang.Iterable)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"Counter","l":"addAll(Iterator)","u":"addAll(java.util.Iterator)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"SSSOMPrefixMap","l":"addAll(Map)","u":"addAll(java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersArguments","l":"addAll(Map)","u":"addAll(java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersArguments","l":"addAll(TransformersArguments)","u":"addAll(de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer","c":"TypeTransformerRegistry","l":"addAllTransformersViaServiceRegistry()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.typetransformer","c":"TypeTransformerRegistry","l":"addAllTransformersViaServiceRegistry(ClassLoader)","u":"addAllTransformersViaServiceRegistry(java.lang.ClassLoader)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations","c":"StringOperations","l":"addAlternativeWritingsSimple(HashSet)","u":"addAlternativeWritingsSimple(java.util.HashSet)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DcjsElement","l":"addAnchorClass(String)","u":"addAnchorClass(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArgument(String)","u":"addArgument(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea","c":"OpenEAConfiguration","l":"addArgument(String, Object)","u":"addArgument(java.lang.String,java.lang.Object)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArgumentLine(String)","u":"addArgumentLine(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArgumentLine(String, boolean)","u":"addArgumentLine(java.lang.String,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArguments(List)","u":"addArguments(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArguments(String...)","u":"addArguments(java.lang.String...)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArgumentScope(List)","u":"addArgumentScope(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addArgumentScope(String)","u":"addArgumentScope(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addBoxPlotMatcherConfidence()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher","c":"SimpleStringMatcher","l":"addClashedLabel(String, String)","u":"addClashedLabel(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering","c":"FilterByErrorDegree","l":"addConfidence(Alignment)","u":"addConfidence(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addConfidenceBar()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel","c":"BoundedPathMatching","l":"addConfiguration(BoundedPathMatchingConfiguration)","u":"addConfiguration(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.BoundedPathMatchingConfiguration)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel","c":"BoundedPathMatching","l":"addConfigurationClassHierarchy()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel","c":"BoundedPathMatching","l":"addConfigurationPropertyHierarchy()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addConfusionHeatMap()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning","c":"GridSearch","l":"addConstructorParameter(List)","u":"addConstructorParameter(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning","c":"GridSearch","l":"addConstructorParameter(List, Class)","u":"addConstructorParameter(java.util.List,java.lang.Class)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering","c":"FamerClustering","l":"addCorrespondences"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering","c":"ClusterUtil","l":"addCorrespondencesMultiCluster(Alignment, Map>)","u":"addCorrespondencesMultiCluster(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addDataChart()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addDataCount()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addDefaultDashboard()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers","c":"MultiSourceDispatcherIncrementalMerge","l":"addDistance(Properties, double, double)","u":"addDistance(java.util.Properties,double,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering","c":"ComputeErrDegree","l":"addEdge(T, T)","u":"addEdge(T,T)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph","c":"CycleDetection","l":"addEdge(T, T)","u":"addEdge(T,T)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.graph","c":"CycleRemoval","l":"addEdge(T, T)","u":"addEdge(T,T)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering","c":"ComputeErrDegree","l":"addEdge(T, T, double)","u":"addEdge(T,T,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"addElement(DcjsElement)","u":"addElement(de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard.DcjsElement)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ExternalProcess","l":"addEnvironmentVariable(String, 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source.dispatchers","c":"MultiSourceDispatcherIncrementalMergeByCluster","l":"setDistance(ClusterDistance)","u":"setDistance(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers.clustermerge.ClusterDistance)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction","c":"MwbNode","l":"setDistance(int)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.seals","c":"MatcherSealsBuilder","l":"setDoNotUseInputAlignment(boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale","c":"ScalableStringProcessingMatcher","l":"setEarlyStopping(boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"setEntityOne(String)","u":"setEntityOne(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Correspondence","l":"setEntityTwo(String)","u":"setEntityTwo(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.docker","c":"MatcherDockerFile","l":"setEnvironmentVariables(List)","u":"setEnvironmentVariables(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"Word2VecConfiguration","l":"setEpochs(int)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel.hierarchical.agony","c":"AgonyEdge","l":"setEulerian(boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.dbpedia","c":"DBpediaKnowledgeSource","l":"setExcludedHypernyms(Set)","u":"setExcludedHypernyms(java.util.Set)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"Alignment","l":"setExtensions(Map)","u":"setExtensions(java.util.Map)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_assembly","c":"SealsExternalDescriptorHandler","l":"setExternalcommand(String)","u":"setExternalcommand(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers","c":"AlcomoFilter","l":"setExtractionProblem(ExtractionProblem)","u":"setExtractionProblem(de.uni_mannheim.informatik.dws.alcomo.ExtractionProblem)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersBase","l":"setExtractor(TextExtractor)","u":"setExtractor(de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractor)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersBase","l":"setExtractorMap(TextExtractorMap)","u":"setExtractorMap(de.uni_mannheim.informatik.dws.melt.matching_jena.TextExtractorMap)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter","c":"TopXFilter","l":"setFilterMode(TopXFilter.TopFilterMode)","u":"setFilterMode(de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.TopXFilter.TopFilterMode)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DcjsElement","l":"setFilterText(String)","u":"setFilterText(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"OntoInfo","l":"setFormalism(String)","u":"setFormalism(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"OntoInfo","l":"setFormalismURI(String)","u":"setFormalismURI(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base","c":"OaeiOptions","l":"setFormat(String)","u":"setFormat(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction","c":"MwbNode","l":"setFree(boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.seals","c":"MatcherSealsBuilder","l":"setFreshMatcherInstance(boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"LLMBase","l":"setGenerationArguments(TransformersArguments)","u":"setGenerationArguments(de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.TransformersArguments)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers","c":"MultiSourceDispatcherIncrementalMerge","l":"setGoldStandard(Alignment, 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LabelToConceptLinker)","u":"writeLinksToFile(java.lang.String,java.util.List,de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.LabelToConceptLinker)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List)","u":"writeList(java.util.List)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List, File)","u":"writeList(java.util.List,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util","c":"WriteNumpy","l":"writeList(List, Writer)","u":"writeList(java.util.List,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_assembly","c":"WriteMainMatcherClassToFile","l":"WriteMainMatcherClassToFile()","u":"%3Cinit%3E()"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writeMatcher(String, double, double)","u":"writeMatcher(java.lang.String,double,double)"},{"p":"de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api","c":"SSSOMSerializer","l":"writeMetadata(SSSOMPrefixMap, Alignment, OutputStreamWriter, boolean)","u":"writeMetadata(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.SSSOMPrefixMap,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.OutputStreamWriter,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel","c":"FileSaveMatcher","l":"writeModel(OntModel, File)","u":"writeModel(org.apache.jena.ontology.OntModel,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeModelAsTextFile(String, String)","u":"writeModelAsTextFile(java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeModelAsTextFile(String, String, String)","u":"writeModelAsTextFile(java.lang.String,java.lang.String,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToFile(OntModel, File)","u":"writeModelToFile(org.apache.jena.ontology.OntModel,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeModelToFile(URL, 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Writer)","u":"writeOneTriplet(org.apache.jena.rdf.model.Resource,org.apache.jena.rdf.model.Resource,org.apache.jena.rdf.model.Resource,java.util.Map,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRelationTypePrediction","l":"writeOverviewFileMatcherTestCase(List, TestCase, String, CSVPrinter)","u":"writeOverviewFileMatcherTestCase(java.util.List,de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.lang.String,org.apache.commons.csv.CSVPrinter)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCSV","l":"writeOverviewFileMatcherTestCase(TestCase, String, File, boolean)","u":"writeOverviewFileMatcherTestCase(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.lang.String,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writePrecision(double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_base.external.cli.process","c":"ProcessOutputAlignmentCollector","l":"writer"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.visualization","c":"LatexPrecisionRecall","l":"writeRecall(double)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction","c":"RelationTypeFineTuner","l":"writeRelationPredictionFormat(Model, Writer)","u":"writeRelationPredictionFormat(org.apache.jena.rdf.model.Model,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"DocumentSimilarityBase","l":"writeResourceText(ExtendedIterator, Writer)","u":"writeResourceText(org.apache.jena.util.iterator.ExtendedIterator,java.io.Writer)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"Evaluator","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorAlignmentAnalyzer","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorBasic","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCopyResults","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorCSV","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorPipeline","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRank","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRankGroup","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator","c":"EvaluatorRelationTypePrediction","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageHTML","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.resultspage","c":"ResultsPageLatex","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSource","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.multisource","c":"EvaluatorMultiSourceBasic","l":"writeResultsToDirectory(File)","u":"writeResultsToDirectory(java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeResultsToDirectory(String)","u":"writeResultsToDirectory(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.stringOperations","c":"StringOperations","l":"writeSetToFile(File, Set)","u":"writeSetToFile(java.io.File,java.util.Set)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeSetToFile(File, Set)","u":"writeSetToFile(java.io.File,java.util.Set)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.services.io","c":"IOoperations","l":"writeSetToFileInOutputDirectory(Set, String)","u":"writeSetToFileInOutputDirectory(java.util.Set,java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeTestCaseResultFile(Map, File)","u":"writeTestCaseResultFile(java.util.Map,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseSourceToFile(TestCase, File)","u":"writeTestCaseSourceToFile(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseTargetToFile(TestCase, File)","u":"writeTestCaseTargetToFile(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseToFolder(TestCase)","u":"writeTestCaseToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.TestCase)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTestCaseToFolder(TestCase, 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File)","u":"writeToFile(java.io.File,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.visualization.dashboard","c":"DashboardBuilder","l":"writeToFile(String)","u":"writeToFile(java.lang.String)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.significance","c":"EvaluatorMcNemarSignificance","l":"writeTrackResultFile(Map, File)","u":"writeTrackResultFile(java.util.Map,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToFolder(Track)","u":"writeTrackToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.Track)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToFolder(Track, File)","u":"writeTrackToFolder(de.uni_mannheim.informatik.dws.melt.matching_data.Track,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.textExtractors","c":"ManualInspection","l":"writeTrackToStdOut(Track)","u":"writeTrackToStdOut(de.uni_mannheim.informatik.dws.melt.matching_data.Track)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction","c":"RelationTypeFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"SentenceTransformersFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"TransformersBaseFineTuner","l":"writeTrainingFile(OntModel, OntModel, Alignment, File, boolean)","u":"writeTrainingFile(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea","c":"OpenEAMatcher","l":"writeTrainValAlignments(Alignment, File)","u":"writeTrainValAlignments(de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers","c":"SentenceTransformersFineTuner","l":"writeTripletFormat(OntModel, OntModel, Alignment, File, boolean)","u":"writeTripletFormat(org.apache.jena.ontology.OntModel,org.apache.jena.ontology.OntModel,de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment,java.io.File,boolean)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeVocabularyToFile(String, File)","u":"writeVocabularyToFile(java.lang.String,java.io.File)"},{"p":"de.uni_mannheim.informatik.dws.melt.matching_ml.python","c":"PythonServer","l":"writeVocabularyToFile(String, 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b/javadoc_latest/overview-tree.html @@ -226,7 +226,7 @@

    Class Hierarchy

  • de.uni_mannheim.informatik.dws.melt.matching_base.MatcherCombination
    • -
  • de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile (implements java.io.Closeable)
    • +
  • de.uni_mannheim.informatik.dws.melt.matching_base.external.docker.MatcherDockerFile (implements java.io.Closeable, de.uni_mannheim.informatik.dws.melt.matching_base.IMatcher<ModelClass,AlignmentClass,ParameterClass>)
  • de.uni_mannheim.informatik.dws.melt.matching_base.MatcherFile
    • de.uni_mannheim.informatik.dws.melt.matching_base.external.seals.MatcherSeals