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DL-MaloSite-and-RF-MaloSite

DL-MaloSite

Requirement

Backend = Tensorflow
Keras
Numpy
Biopython
Sklearn
Imblearn

Dataset

Dataset is in FASTA format which includes protein window size of 29. Test dataset is provided. There are two dataset for positive and negative examples. Dataset includes all organisms, human, mouse and S-organism. They are provided in separate folder with separate models.

Model

The best model has been included. Download all model parts and extracting the 1st part will automatically extract others. The final file is named as .h5 ( Model Name)

Prediction for given test dataset

With all the prerequisite installed, run -> model_load.py

Prediction for your dataset

The format should be same as the test dataset which is basically FASTA format. This model works for window size 29 only.

Contact

Feel free to contact us if you need any help : [email protected]

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