Error in GNU/Linux Ubuntu 22.04

[mauriciovancine]

Dear,

I'm trying to compile on Ubuntu, but I had this error.

Could you help?

Thank you.

Error:

In file included from /home/mude/Downloads/TauDEM/src/streamnet.cpp:56:
/home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool sendLink(int32_t, int)’:
/home/mude/Downloads/TauDEM/src/linklib.h:281:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’?
281 | MPI_Type_extent(MPI_LONG, &extent);
| ^~~~~~~~~~~~~~~
| MPI_Type_get_extent
/home/mude/Downloads/TauDEM/src/linklib.h:286:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’?
286 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType);
| ^~~~~~~~~~~~~~~
| MPI_Type_size_x
/home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool recvLink(int)’:
/home/mude/Downloads/TauDEM/src/linklib.h:349:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’?
349 | MPI_Type_extent(MPI_LONG, &extent);
| ^~~~~~~~~~~~~~~
| MPI_Type_get_extent
/home/mude/Downloads/TauDEM/src/linklib.h:354:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’?
354 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType);
| ^~~~~~~~~~~~~~~
| MPI_Type_size_x
/home/mude/Downloads/TauDEM/src/streamnet.cpp: In function ‘int reachshape(long int*, float*, float*, float*, double*, double*, long int, tiffIO&)’:
/home/mude/Downloads/TauDEM/src/streamnet.cpp:347:24: warning: ignoring return value of ‘OGRErr OGR_L_CreateFeature(OGRLayerH, OGRFeatureH)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
347 | OGR_L_CreateFeature( hLayer1, hFeature1 ); //adding feature
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~

[drfuka]

Howdy Mauricio, I keep meaning to post this and/or send it to David, so thanks for bringing it up. These are errors that come from a dependency on prior versions of MPI. For V2+, you can update a few lines in 4 files to bring TauDEM into V2+ compliance. This was something that deprecated in V2 but still supported for legacy, but removed completely in V3. You need to update files that include the following from: MPI_Type_create_struct calls to MPI_Type_create_struct, a simple find/replace, and: MPI_Type_extent(MPI_LONG, &extent) to MPI_Aint lb;MPI_Type_get_extent(MPI_LONG, &lb, &extent) the second of which is less simple depending on your editor. If you are *nix friendly: In your "terminal" run the code per the

…

---In Terminal--- cd ~/src/ # Set your directory to your home directory git clone https://github.com/dtarb/TauDEM.git mkdir ~/src/TauDEM/bin cd ~/src/TauDEM/src make # NOOOOOOO AAAAAAAGGGGGGGHHHHHHH WHAT HAPPENED ROJA?!?!?! # https://www.mpich.org/static/docs/v3.2/www3/MPI_Type_struct.html # Here, we have found a few updates that need to be made # to the code for updating # https://www.mpich.org/static/docs/v3.2/www3/MPI_Type_struct.html grep MPI_Type_extent * grep MPI_Type_struct * sed -i -e 's/MPI_Type_struct/MPI_Type_create_struct/g' linklib.h # yes, this next line is very small font, but it is one line so... sed -i -e 's/MPI_Type_extent(MPI_LONG, \&extent)/MPI_Aint lb\;MPI_Type_get_extent(MPI_LONG, \&lb, \&extent)/g' linklib.h # Now let's try make again! make

On Tue, Mar 21, 2023 at 9:39 AM Maurício Vancine ***@***.***> wrote: Dear, I'm trying to compile on Ubuntu, but I had this error. Could you help? Thank you. Error: In file included from /home/mude/Downloads/TauDEM/src/streamnet.cpp:56: /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool sendLink(int32_t, int)’: /home/mude/Downloads/TauDEM/src/linklib.h:281:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 281 | MPI_Type_extent(MPI_LONG, &extent); | ^~~~~~~~~~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:286:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 286 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~~~~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool recvLink(int)’: /home/mude/Downloads/TauDEM/src/linklib.h:349:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 349 | MPI_Type_extent(MPI_LONG, &extent); | ^~~~~~~~~~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:354:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 354 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~~~~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/streamnet.cpp: In function ‘int reachshape(long int*, float*, float*, float*, double*, double*, long int, tiffIO&)’: /home/mude/Downloads/TauDEM/src/streamnet.cpp:347:24: warning: ignoring return value of ‘OGRErr OGR_L_CreateFeature(OGRLayerH, OGRFeatureH)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | OGR_L_CreateFeature( hLayer1, hFeature1 ); //adding feature | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ — Reply to this email directly, view it on GitHub <#249>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAXH4LP2G2CCGU3BEYJWATDW5HDT5ANCNFSM6AAAAAAWCT4EQE> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[mauriciovancine]

Dear @drfuka,

Now, I'm good, thanks for asking.

I hope you are too.

The compilation worked!

Thank you so much for your help!

Kind regards.