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Schmoho
changed the title
render elements receive wrong names (possible JSBML bug)
MP (probably: JSBML) gives wrong tags to render elements
Dec 1, 2024
Unlike expected, the render specification seems to specify the
GlobalRenderInformation
class to use arenderInformation
tag, possibly because it derives from theRenderInformation
tag. (Section 3.5.3)https://raw.githubusercontent.com/combine-org/combine-specifications/main/specifications/files/sbml.level-3.version-1.render.version-1.release-1.pdf
However, after application of the ModelPolisher, these tags are named
globalRenderInformation
, yielding an SBML_ERROR in cobrapy validation.This behaviour can be observed on the model https://www.ebi.ac.uk/biomodels/BIOMD0000000967 where
turns to
The MP does not concern itself with this package at all, so I assume this is an error in JSBML
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