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CHANGELOG.md

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Changelog

Observes Semantic Versioning standard and Keep a Changelog convention.

0.5.6 - 2023-04-28

  • Fix - .ipynb output in tutorials is not visible in dark mode.
  • Fix - typos in docstrings.

0.5.5 - 2023-04-06

  • Update - Bump element-interface requirement to 0.5.1.

0.5.4 - 2023-03-08

  • Add - Requirement for ipywidgets
  • Update - Docker Compose file for docs release

0.5.3 - 2023-02-23

  • Add - spelling, markdown, and pre-commit config files
  • Add - Notebook rendering to docs

0.5.2 - 2023-01-11

  • Bugfix - fix errors in ingesting single-plane PrairieView scans into ScanInfo
  • Add - Optional installation of caiman and suite2p through pip

0.5.1 - 2022-12-15

  • Add - Imports for prairieview loader

0.5.0 - 2022-12-14

  • Add - Cell extraction with EXTRACT package

0.4.2 - 2022-11-02

  • Bugfix - Add plotting package to the requirements to generate the figures
  • Add - Scan date parser from nd2 files

0.4.1 - 2022-10-28

  • Update - Bump version to trigger PyPI release to revert updates from incorrect tag

0.4.0 - 2022-10-28

  • Add - New schema imaging_report to compute and store figures from results
  • Add - Widget to display figures

0.3.0 - 2022-10-07

  • Add - Reader for Bruker PrairieView acquisition system

0.2.2 - 2022-09-28

  • Update - Minor table explanation edits
  • Update - Query simplifications
  • Update - Minor code refactoring

0.2.1 - 2022-09-12

  • Bugfix - fix errors in auto generating new ProcessingTask

0.2.0 - 2022-07-01

  • Add - Imaging module (imaging_preprocess.py) for pre-processing steps

0.1.0 - 2022-06-29

  • Add - Support for element-interface
  • Add - Trigger Suite2p and CaImAn
  • Add - Imaging module for no curation
  • Add - Support for Nikon acquisition system
  • Add - scan_datetime and scan_duration attributes
  • Add - Estimate for scan duration
  • Add - Citation section to README
  • Update - Move background file to elements.datajoint.org
  • Add - Adopt black formatting into code base

0.1.0b0 - 2021-05-07

  • Update - First beta release

0.1.0a4 - 2021-05-07

  • Update - Add workaround to handle DataJoint 0.13.* issue #914

0.1.0a3 - 2021-05-03

  • Add - GitHub Action release process
  • Add - scan and imaging modules
  • Add - Readers for ScanImage, ScanBox, Suite2p, CaImAn