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work_log_test
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work_log_test
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### step 1 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 1 --q dinglab
#
### step 2 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 2 --q dinglab
### step 3 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 3 --q dinglab
### step 4 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 4 --q dinglab
### step 5 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 5 --q dinglab
### step 6 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 6 --q dinglab
### step 7 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 7 --q dinglab --sre 1
### step 8 ###
perl germlinewrapper.pl --rdir /storage1/fs1/songcao/Active/Project/CPTAC/germline --log /storage1/fs1/songcao/Active/Project/CPTAC/germline.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --step 8 --q dinglab --sre 1