We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
createMQF()
When I used this FASTA file with the following script, createMQF() and createBMQF() functions entered an infinite loop.
createBMQF()
head100_tr.zip
#include <iostream> #include "kDataFrame.hpp" #include <string> #include <vector> #include "algorithms.hpp" #include <math.h> #include "kDataframes/kDataFrameMQF.hpp" #include "kDataframes/kDataFrameSTL.hpp" int main(int argc, char** argv) { string file_name = argv[1]; int chunk_size = 10; int kSize = 25; readingModes RM = KMERS; hashingModes HM = integer_hasher; auto* KF = kDataFrameFactory::createPHMAP(kSize, HM); kmerDecoder* KD = kmerDecoder::getInstance(file_name, chunk_size, RM, HM, { {"kSize", kSize} }); while (!KD->end()) { KD->next_chunk(); for (const auto& seq : *KD->getKmers()) for (const auto& kmer : seq.second) KF->insert(kmer.hash); } cout << "converting to MQF..." << endl; kDataFrame* kf_mqf = kDataFrameFactory::createMQF(KF); kf_mqf->save("test"); }
The text was updated successfully, but these errors were encountered:
No branches or pull requests
When I used this FASTA file with the following script,
createMQF()
andcreateBMQF()
functions entered an infinite loop.head100_tr.zip
The text was updated successfully, but these errors were encountered: