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[Question] Are there any tutorials in constructing dendrogram plots from SciPy linkage matrix? #162

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jolespin opened this issue Jun 13, 2018 · 0 comments

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@jolespin
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jolespin commented Jun 13, 2018

I have been using a variation of the default SciPy & matplotlib dendrogram combo via this but would like to use astrodendro to make the dendrograms look nicer. I really like when the branches don't extend all the way like in this figure from A phylogenetic transform enhances analysis of compositional microbiota data.

Are there any tutorials that show how to create dendrogram's using your package with just a NumPy/SciPy linkage matrix and some labels (possibly cluster assignments)?

image

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