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CHANGELOG.rst

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Change Log

3.7.0

  • Add support for BAM2FASTQ MetaWorkflowRun
  • Add RNA-Seq alignment MetaWorkflowRun

3.6.2

  • Add short_reads_FASTQ_quality_metrics MetaWorkflowRun
  • Rename short read FASTQ MetaWorkflowRun specific for Illumina

3.6.1

  • Use only input files with status uploaded when creating MetaWorkflowRuns. (Ignore retracted files)

3.6.0

  • Support for Pyhthon 3.12.

3.5.0

  • Add commands to create ultra-long BAM QC (ONT) and long-read BAM QC (Pacbio) MetaWorkflowRuns

3.4.1

  • Update dependencies

3.4.0

  • Add set_property function to wrangler utils for SMaHT

3.3.0

  • Restructure CLI to create MetaWorkflowRuns and execute wrangler functions
  • Add more MetaWorkflowRun creation functions for SMaHT (CRAM to FASTQ conversion, long read QC)
  • Add wrangler utils for SMaHT

3.2.3

  • Update magma_smaht to accommodate data model change on Library from analyte to analytes

3.2.2

  • Generalize tibanna-ff dependency

3.2.1

  • Use click ^7.00

3.2.0

  • Automated MetaWorkflowRun creation scripts

3.1.0

  • Add mwfr_from_input

3.0.1

  • Change dcicutils from 8.0.0 to ^8.0.0.
  • Treat QC rulesets as parameters

3.0.0

  • Added magma components for interfacing with SMaHT portal

2.1.1

  • Update common fields for more strict validation with jsonschema updates in portal
  • Refactor dimensionality handling

2.1.0

  • Add ability to specify explicit inputs to gather and sharding on MWFRs
  • Cost calculations for MWFRs only performed once after MWFR has finished running to save on tibanna API calls
  • Small bug fixes for determination of WorkflowRun status

2.0.0

  • Added this CHANGELOG.rst file.
  • Upgrade to Python 3.11.