diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index d56ad37ef9..38561f970e 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -20,14 +20,14 @@ jobs:
     name: cgap-portal tests
 
     # The type of runner that the job will run on
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     # Build matrix
     strategy:
       matrix:
         test_type: ['UNIT', 'INDEX', 'DOCKER']
         # We are really not set up for these next two to be multiplicative, so be careful adding more.
-        python_version: ['3.8']
+        python_version: ['3.11']
         node_version: ['18']
 
     # Steps represent a sequence of tasks that will be executed as part of the job
@@ -108,7 +108,7 @@ jobs:
           poetry run wipe-test-indices $TEST_JOB_ID search-cgap-unit-testing-opensearch-tcs45cjpwgdzoi7pafr6oewq6u.us-east-1.es.amazonaws.com:443
 
       - name: Docker Build
-        if: ${{ matrix.test_type == 'DOCKER' && matrix.node_version == '18' && matrix.python_version == '3.8' }}
+        if: ${{ matrix.test_type == 'DOCKER' && matrix.node_version == '18' && matrix.python_version == '3.11' }}
         run: |
           touch deploy/docker/local/docker_development.ini  # cheap substitute for prepare-docker to make ignored file
           docker build .
diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 9917db09f5..6af5dd6bb6 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -6,6 +6,19 @@ cgap-portal
 Change Log
 ----------
 
+15.0.0
+======
+* Upgrade to Python 3.11.
+* Changed pyyaml version to ^6.0.1.
+* Updated boto versions.
+* Removed types/access_key.py and schemas/access_key.json as the ones in snovault are sufficient.
+* Added generate-local-access-key script (from snovault) to pyproject.toml;
+  orignally created for smaht-portal since early in development no way to
+  create an access-key normally using the UI; but generall useful/convenient.
+* Added generate-local-access-key script (defined in snovault).
+* Added view-local-object script (defined in snovault).
+
+
 14.3.1
 ======
 `PR 753: Auth0 Symlink Bugfix <https://github.com/dbmi-bgm/cgap-portal/pull/753>`_
diff --git a/Dockerfile b/Dockerfile
index ad5adaf299..a3ea5f066f 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,7 +1,9 @@
 # CGAP-Portal (Production) Dockerfile
 
-# Debian Buster with Python 3.8.13
-FROM python:3.8.13-slim-buster
+# Bullseye with Python 3.11.5
+# 2023-09-28: Update docker image to a Python 3.11 version;
+# this was previously: FROM python:3.8.13-slim-buster
+FROM python:3.11.5-slim-bullseye
 
 MAINTAINER William Ronchetti "william_ronchetti@hms.harvard.edu"
 
@@ -32,7 +34,7 @@ ENV PATH="$VIRTUAL_ENV/bin:$PATH"
 # Note that the ordering of these operations is intentional to minimize package footprint
 WORKDIR /home/nginx/.nvm
 ENV NVM_DIR=/home/nginx/.nvm
-COPY deploy/docker/production/install_nginx.sh /install_nginx.sh
+COPY deploy/docker/production/install_nginx_bullseye.sh /install_nginx.sh
 
 # Temporarily replacing
 #     curl -sSL https://install.python-poetry.org | POETRY_HOME=/opt/venv python - && \
diff --git a/poetry.lock b/poetry.lock
index 21354ad540..67a4bbdd4e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,22 +1,20 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
 
 [[package]]
 name = "apipkg"
-version = "3.0.1"
+version = "3.0.2"
 description = "apipkg: namespace control and lazy-import mechanism"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "apipkg-3.0.1-py3-none-any.whl", hash = "sha256:6c4e654de1be834c66579003abc992121745209c2d12561a0dd5888feb06906f"},
-    {file = "apipkg-3.0.1.tar.gz", hash = "sha256:f8c021adafc9132ac2fba9fd3c5768365d0a8c10aa375fb15e329f1fce8a5f01"},
+    {file = "apipkg-3.0.2-py3-none-any.whl", hash = "sha256:a16984c39de280701f3f6406ed3af658f2a1965011fe7bb5be34fbb48423b411"},
+    {file = "apipkg-3.0.2.tar.gz", hash = "sha256:c7aa61a4f82697fdaa667e70af1505acf1f7428b1c27b891d204ba7a8a3c5e0d"},
 ]
 
 [[package]]
 name = "arrow"
 version = "1.2.3"
 description = "Better dates & times for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -29,21 +27,19 @@ python-dateutil = ">=2.7.0"
 
 [[package]]
 name = "async-timeout"
-version = "4.0.2"
+version = "4.0.3"
 description = "Timeout context manager for asyncio programs"
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
-    {file = "async-timeout-4.0.2.tar.gz", hash = "sha256:2163e1640ddb52b7a8c80d0a67a08587e5d245cc9c553a74a847056bc2976b15"},
-    {file = "async_timeout-4.0.2-py3-none-any.whl", hash = "sha256:8ca1e4fcf50d07413d66d1a5e416e42cfdf5851c981d679a09851a6853383b3c"},
+    {file = "async-timeout-4.0.3.tar.gz", hash = "sha256:4640d96be84d82d02ed59ea2b7105a0f7b33abe8703703cd0ab0bf87c427522f"},
+    {file = "async_timeout-4.0.3-py3-none-any.whl", hash = "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"},
 ]
 
 [[package]]
 name = "attrs"
 version = "23.1.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -62,7 +58,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 name = "aws-requests-auth"
 version = "0.4.3"
 description = "AWS signature version 4 signing process for the python requests module"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -75,29 +70,27 @@ requests = ">=0.14.0"
 
 [[package]]
 name = "awscli"
-version = "1.29.22"
+version = "1.29.62"
 description = "Universal Command Line Environment for AWS."
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "awscli-1.29.22-py3-none-any.whl", hash = "sha256:031ce6bcb58fa4f8817dd94043a64af0174f82a3d5df7abf4d511120e8b8398e"},
-    {file = "awscli-1.29.22.tar.gz", hash = "sha256:2a289197a51ba5cde621fc197efc17871cdf3034132d053d8d0af3e5cb338d13"},
+    {file = "awscli-1.29.62-py3-none-any.whl", hash = "sha256:642c2b1bfceba5af29a4b2648cce86f765fd48749fd21d79e0480cfacf0af907"},
+    {file = "awscli-1.29.62.tar.gz", hash = "sha256:aef24cdcdc6d8acdb482a06620289a76ccc264424536e235c2a5705810651b2b"},
 ]
 
 [package.dependencies]
-botocore = "1.31.22"
+botocore = "1.31.62"
 colorama = ">=0.2.5,<0.4.5"
 docutils = ">=0.10,<0.17"
 PyYAML = ">=3.10,<6.1"
 rsa = ">=3.1.2,<4.8"
-s3transfer = ">=0.6.0,<0.7.0"
+s3transfer = ">=0.7.0,<0.8.0"
 
 [[package]]
 name = "beautifulsoup4"
 version = "4.12.2"
 description = "Screen-scraping library"
-category = "main"
 optional = false
 python-versions = ">=3.6.0"
 files = [
@@ -116,7 +109,6 @@ lxml = ["lxml"]
 name = "bitarray"
 version = "2.8.1"
 description = "efficient arrays of booleans -- C extension"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -226,40 +218,38 @@ files = [
 
 [[package]]
 name = "boto3"
-version = "1.28.22"
+version = "1.28.62"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "boto3-1.28.22-py3-none-any.whl", hash = "sha256:0c1c1d19232018ac49fd2c0a94aa0b802f5d222e89448ff50734626bce454b32"},
-    {file = "boto3-1.28.22.tar.gz", hash = "sha256:af1ce129f462cdc8dfb1a1c559d7ed725e51344fb0ae4a56d9453196bf416555"},
+    {file = "boto3-1.28.62-py3-none-any.whl", hash = "sha256:0dfa2fc96ccafce4feb23044d6cba8b25075ad428a0c450d369d099c6a1059d2"},
+    {file = "boto3-1.28.62.tar.gz", hash = "sha256:148eeba0f1867b3db5b3e5ae2997d75a94d03fad46171374a0819168c36f7ed0"},
 ]
 
 [package.dependencies]
-botocore = ">=1.31.22,<1.32.0"
+botocore = ">=1.31.62,<1.32.0"
 jmespath = ">=0.7.1,<2.0.0"
-s3transfer = ">=0.6.0,<0.7.0"
+s3transfer = ">=0.7.0,<0.8.0"
 
 [package.extras]
 crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 
 [[package]]
 name = "boto3-stubs"
-version = "1.28.22"
-description = "Type annotations for boto3 1.28.22 generated with mypy-boto3-builder 7.17.2"
-category = "dev"
+version = "1.28.62"
+description = "Type annotations for boto3 1.28.62 generated with mypy-boto3-builder 7.19.0"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "boto3-stubs-1.28.22.tar.gz", hash = "sha256:c6183e305e4d8754a9d6e06c58e9746d0451ebad840e6c2a7edfb94efee2bd7d"},
-    {file = "boto3_stubs-1.28.22-py3-none-any.whl", hash = "sha256:626b5cd9629152b7c5994774bc3f0d9a6e7b63d3bb85cb61cc3c3a4f0585c3d8"},
+    {file = "boto3-stubs-1.28.62.tar.gz", hash = "sha256:f5ae08d2abae7709fff3e7cacea66c41cb43236527cfaf3975e506c6c67439a0"},
+    {file = "boto3_stubs-1.28.62-py3-none-any.whl", hash = "sha256:22a08e27d2ede1849dd0d75e8501099240b34bd70adb606584a2af2e12f3a22b"},
 ]
 
 [package.dependencies]
 botocore-stubs = "*"
 types-s3transfer = "*"
-typing-extensions = {version = ">=4.1.0", markers = "python_version < \"3.9\""}
+typing-extensions = {version = ">=4.1.0", markers = "python_version < \"3.12\""}
 
 [package.extras]
 accessanalyzer = ["mypy-boto3-accessanalyzer (>=1.28.0,<1.29.0)"]
@@ -267,7 +257,7 @@ account = ["mypy-boto3-account (>=1.28.0,<1.29.0)"]
 acm = ["mypy-boto3-acm (>=1.28.0,<1.29.0)"]
 acm-pca = ["mypy-boto3-acm-pca (>=1.28.0,<1.29.0)"]
 alexaforbusiness = ["mypy-boto3-alexaforbusiness (>=1.28.0,<1.29.0)"]
-all = ["mypy-boto3-accessanalyzer (>=1.28.0,<1.29.0)", "mypy-boto3-account (>=1.28.0,<1.29.0)", "mypy-boto3-acm (>=1.28.0,<1.29.0)", "mypy-boto3-acm-pca (>=1.28.0,<1.29.0)", "mypy-boto3-alexaforbusiness (>=1.28.0,<1.29.0)", "mypy-boto3-amp (>=1.28.0,<1.29.0)", "mypy-boto3-amplify (>=1.28.0,<1.29.0)", "mypy-boto3-amplifybackend (>=1.28.0,<1.29.0)", "mypy-boto3-amplifyuibuilder (>=1.28.0,<1.29.0)", "mypy-boto3-apigateway (>=1.28.0,<1.29.0)", "mypy-boto3-apigatewaymanagementapi (>=1.28.0,<1.29.0)", "mypy-boto3-apigatewayv2 (>=1.28.0,<1.29.0)", "mypy-boto3-appconfig (>=1.28.0,<1.29.0)", "mypy-boto3-appconfigdata (>=1.28.0,<1.29.0)", "mypy-boto3-appfabric (>=1.28.0,<1.29.0)", "mypy-boto3-appflow (>=1.28.0,<1.29.0)", "mypy-boto3-appintegrations (>=1.28.0,<1.29.0)", "mypy-boto3-application-autoscaling (>=1.28.0,<1.29.0)", "mypy-boto3-application-insights (>=1.28.0,<1.29.0)", "mypy-boto3-applicationcostprofiler (>=1.28.0,<1.29.0)", "mypy-boto3-appmesh (>=1.28.0,<1.29.0)", "mypy-boto3-apprunner (>=1.28.0,<1.29.0)", "mypy-boto3-appstream (>=1.28.0,<1.29.0)", "mypy-boto3-appsync (>=1.28.0,<1.29.0)", "mypy-boto3-arc-zonal-shift (>=1.28.0,<1.29.0)", "mypy-boto3-athena (>=1.28.0,<1.29.0)", "mypy-boto3-auditmanager (>=1.28.0,<1.29.0)", "mypy-boto3-autoscaling (>=1.28.0,<1.29.0)", "mypy-boto3-autoscaling-plans (>=1.28.0,<1.29.0)", "mypy-boto3-backup (>=1.28.0,<1.29.0)", "mypy-boto3-backup-gateway (>=1.28.0,<1.29.0)", "mypy-boto3-backupstorage (>=1.28.0,<1.29.0)", "mypy-boto3-batch (>=1.28.0,<1.29.0)", "mypy-boto3-billingconductor (>=1.28.0,<1.29.0)", "mypy-boto3-braket (>=1.28.0,<1.29.0)", "mypy-boto3-budgets (>=1.28.0,<1.29.0)", "mypy-boto3-ce (>=1.28.0,<1.29.0)", "mypy-boto3-chime (>=1.28.0,<1.29.0)", "mypy-boto3-chime-sdk-identity (>=1.28.0,<1.29.0)", "mypy-boto3-chime-sdk-media-pipelines (>=1.28.0,<1.29.0)", "mypy-boto3-chime-sdk-meetings (>=1.28.0,<1.29.0)", "mypy-boto3-chime-sdk-messaging (>=1.28.0,<1.29.0)", "mypy-boto3-chime-sdk-voice (>=1.28.0,<1.29.0)", "mypy-boto3-cleanrooms (>=1.28.0,<1.29.0)", "mypy-boto3-cloud9 (>=1.28.0,<1.29.0)", "mypy-boto3-cloudcontrol (>=1.28.0,<1.29.0)", "mypy-boto3-clouddirectory (>=1.28.0,<1.29.0)", "mypy-boto3-cloudformation (>=1.28.0,<1.29.0)", "mypy-boto3-cloudfront (>=1.28.0,<1.29.0)", "mypy-boto3-cloudhsm (>=1.28.0,<1.29.0)", "mypy-boto3-cloudhsmv2 (>=1.28.0,<1.29.0)", "mypy-boto3-cloudsearch (>=1.28.0,<1.29.0)", "mypy-boto3-cloudsearchdomain (>=1.28.0,<1.29.0)", "mypy-boto3-cloudtrail (>=1.28.0,<1.29.0)", "mypy-boto3-cloudtrail-data (>=1.28.0,<1.29.0)", "mypy-boto3-cloudwatch (>=1.28.0,<1.29.0)", "mypy-boto3-codeartifact (>=1.28.0,<1.29.0)", "mypy-boto3-codebuild (>=1.28.0,<1.29.0)", "mypy-boto3-codecatalyst (>=1.28.0,<1.29.0)", "mypy-boto3-codecommit (>=1.28.0,<1.29.0)", "mypy-boto3-codedeploy (>=1.28.0,<1.29.0)", "mypy-boto3-codeguru-reviewer (>=1.28.0,<1.29.0)", "mypy-boto3-codeguru-security (>=1.28.0,<1.29.0)", "mypy-boto3-codeguruprofiler (>=1.28.0,<1.29.0)", "mypy-boto3-codepipeline (>=1.28.0,<1.29.0)", "mypy-boto3-codestar (>=1.28.0,<1.29.0)", "mypy-boto3-codestar-connections (>=1.28.0,<1.29.0)", "mypy-boto3-codestar-notifications (>=1.28.0,<1.29.0)", "mypy-boto3-cognito-identity (>=1.28.0,<1.29.0)", "mypy-boto3-cognito-idp (>=1.28.0,<1.29.0)", "mypy-boto3-cognito-sync (>=1.28.0,<1.29.0)", "mypy-boto3-comprehend (>=1.28.0,<1.29.0)", "mypy-boto3-comprehendmedical (>=1.28.0,<1.29.0)", "mypy-boto3-compute-optimizer (>=1.28.0,<1.29.0)", "mypy-boto3-config (>=1.28.0,<1.29.0)", "mypy-boto3-connect (>=1.28.0,<1.29.0)", "mypy-boto3-connect-contact-lens (>=1.28.0,<1.29.0)", "mypy-boto3-connectcampaigns (>=1.28.0,<1.29.0)", "mypy-boto3-connectcases (>=1.28.0,<1.29.0)", "mypy-boto3-connectparticipant (>=1.28.0,<1.29.0)", "mypy-boto3-controltower (>=1.28.0,<1.29.0)", "mypy-boto3-cur (>=1.28.0,<1.29.0)", "mypy-boto3-customer-profiles (>=1.28.0,<1.29.0)", "mypy-boto3-databrew (>=1.28.0,<1.29.0)", "mypy-boto3-dataexchange (>=1.28.0,<1.29.0)", 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 budgets = ["mypy-boto3-budgets (>=1.28.0,<1.29.0)"]
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 [package.extras]
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 version = "2023.7.22"
 description = "Python package for providing Mozilla's CA Bundle."
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 python-versions = ">=3.6"
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 ]
 
 [package.dependencies]
@@ -748,7 +730,6 @@ pycparser = "*"
 name = "chardet"
 version = "3.0.4"
 description = "Universal encoding detector for Python 2 and 3"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -760,7 +741,6 @@ files = [
 name = "charset-normalizer"
 version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -843,14 +823,13 @@ files = [
 
 [[package]]
 name = "click"
-version = "8.1.6"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -860,7 +839,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codacy-coverage"
 version = "1.3.11"
 description = "Codacy coverage reporter for Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -879,7 +857,6 @@ test = ["coverage", "nosetests"]
 name = "codeguru-profiler-agent"
 version = "1.2.4"
 description = "The Python agent to be used for Amazon CodeGuru Profiler"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -894,7 +871,6 @@ boto3 = ">=1.14.0"
 name = "colorama"
 version = "0.3.3"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -905,7 +881,6 @@ files = [
 name = "coverage"
 version = "6.5.0"
 description = "Code coverage measurement for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -971,7 +946,6 @@ toml = ["tomli"]
 name = "coveralls"
 version = "3.3.1"
 description = "Show coverage stats online via coveralls.io"
-category = "dev"
 optional = false
 python-versions = ">= 3.5"
 files = [
@@ -980,7 +954,7 @@ files = [
 ]
 
 [package.dependencies]
-coverage = ">=4.1,<6.0.0 || >6.1,<6.1.1 || >6.1.1,<7.0"
+coverage = ">=4.1,<6.0.dev0 || >6.1,<6.1.1 || >6.1.1,<7.0"
 docopt = ">=0.6.1"
 requests = ">=1.0.0"
 
@@ -991,7 +965,6 @@ yaml = ["PyYAML (>=3.10)"]
 name = "cryptography"
 version = "39.0.2"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-category = "main"
 optional = false
 python-versions = ">=3.6"
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@@ -1037,7 +1010,6 @@ tox = ["tox"]
 name = "cycler"
 version = "0.11.0"
 description = "Composable style cycles"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1047,103 +1019,103 @@ files = [
 
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 name = "cython"
-version = "3.0.0"
+version = "3.0.2"
 description = "The Cython compiler for writing C extensions in the Python language."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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 ]
 
 [[package]]
 name = "dcicpyvcf"
-version = "1.0.0.1b0"
+version = "3.0.0"
 description = "Variant Call Format (VCF) parser for Python"
-category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8.0,<3.12"
 files = [
-    {file = "dcicpyvcf-1.0.0.1b0.tar.gz", hash = "sha256:6303f63cd6c486ba826e7ea44428f39e00d8411ca97d46874ab9f68df8f45959"},
+    {file = "dcicpyvcf-3.0.0-py3-none-any.whl", hash = "sha256:2954a8e6b2b197b056d108409d166a18be261a18130c300c91a8bd73f9b880f7"},
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 ]
 
 [package.dependencies]
+cython = "*"
+pysam = ">=0.21.0"
 setuptools = "*"
 
 [[package]]
 name = "dcicsnovault"
-version = "10.0.2"
+version = "11.0.0"
 description = "Storage support for 4DN Data Portals."
-category = "main"
 optional = false
-python-versions = ">=3.8.1,<3.10"
+python-versions = ">=3.8.1,<3.12"
 files = [
-    {file = "dcicsnovault-10.0.2-py3-none-any.whl", hash = "sha256:7cfb846d067915b2e41dd35ea78ad2a0ac675f0965604ecc254b3e43c54d63c8"},
-    {file = "dcicsnovault-10.0.2.tar.gz", hash = "sha256:e2c7c8780f966202c7c282524643ac3c1a84d3f0259e6126c0ccb1da9e1a9bc0"},
+    {file = "dcicsnovault-11.0.0-py3-none-any.whl", hash = "sha256:cf21483e155fffe9db42f7aee824e32533700f7f63983ec9e930bc865c13e71e"},
+    {file = "dcicsnovault-11.0.0.tar.gz", hash = "sha256:909a8ddf8c406a1a6fc5e86f6dff830e1a5519fc1077a7a8e52ac3d0da039dd2"},
 ]
 
 [package.dependencies]
 aws_requests_auth = ">=0.4.1,<0.5.0"
-boto3 = ">=1.26.133"
-botocore = ">=1.26.133"
-dcicutils = ">=7.5.0,<8.0.0"
+boto3 = ">=1.28.62"
+botocore = ">=1.31.62"
+dcicutils = ">=8.0.0,<9.0.0"
 elasticsearch = "7.13.4"
 elasticsearch_dsl = ">=7.4.0,<8.0.0"
 future = ">=0.15.2,<1"
@@ -1186,28 +1158,28 @@ xlrd = ">=1.0.0,<2.0.0"
 
 [[package]]
 name = "dcicutils"
-version = "7.7.1"
+version = "8.0.0"
 description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
-category = "main"
 optional = false
-python-versions = ">=3.7,<3.10"
+python-versions = ">=3.8,<3.12"
 files = [
-    {file = "dcicutils-7.7.1-py3-none-any.whl", hash = "sha256:f22ed1a58cd53876b682e55726f9e416ba0903e3b5d9f95f4aa1a74d2e96b830"},
-    {file = "dcicutils-7.7.1.tar.gz", hash = "sha256:04cc948db45d93bfe2e0e6569502c863211f0c633b7fe8d10cc28a9f72e62397"},
+    {file = "dcicutils-8.0.0-py3-none-any.whl", hash = "sha256:339834dd93a70fdc26d1c552273c1390275ba637583bbec41a4a8035270b0c72"},
+    {file = "dcicutils-8.0.0.tar.gz", hash = "sha256:50aafbe2dce173bb6779184be0db8497d818a41b62bd686851cf64de507c5b76"},
 ]
 
 [package.dependencies]
 aws-requests-auth = ">=0.4.2,<1"
-boto3 = ">=1.17.39,<2.0.0"
-botocore = ">=1.20.39,<2.0.0"
+boto3 = ">=1.28.57,<2.0.0"
+botocore = ">=1.31.57,<2.0.0"
 docker = ">=4.4.4,<5.0.0"
 elasticsearch = "7.13.4"
 gitpython = ">=3.1.2,<4.0.0"
+jsonc-parser = ">=1.1.5,<2.0.0"
 opensearch-py = ">=2.0.1,<3.0.0"
 PyJWT = ">=2.6.0,<3.0.0"
 pyOpenSSL = ">=23.1.1,<24.0.0"
 pytz = ">=2020.4"
-PyYAML = ">=5.1,<5.5"
+PyYAML = ">=6.0.1,<7.0.0"
 redis = ">=4.5.1,<5.0.0"
 requests = ">=2.21.0,<3.0.0"
 rfc3986 = ">=1.4.0,<2.0.0"
@@ -1222,7 +1194,6 @@ webtest = ">=2.0.34,<3.0.0"
 name = "docker"
 version = "4.4.4"
 description = "A Python library for the Docker Engine API."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1244,7 +1215,6 @@ tls = ["cryptography (>=1.3.4)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1255,7 +1225,6 @@ files = [
 name = "docutils"
 version = "0.16"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1267,7 +1236,6 @@ files = [
 name = "elasticsearch"
 version = "7.13.4"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
 files = [
@@ -1289,7 +1257,6 @@ requests = ["requests (>=2.4.0,<3.0.0)"]
 name = "elasticsearch-dsl"
 version = "7.4.1"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1309,7 +1276,6 @@ develop = ["coverage (<5.0.0)", "mock", "pytest (>=3.0.0)", "pytest-cov", "pytes
 name = "et-xmlfile"
 version = "1.1.0"
 description = "An implementation of lxml.xmlfile for the standard library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1319,14 +1285,13 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.2"
+version = "1.1.3"
 description = "Backport of PEP 654 (exception groups)"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
-    {file = "exceptiongroup-1.1.2.tar.gz", hash = "sha256:12c3e887d6485d16943a309616de20ae5582633e0a2eda17f4e10fd61c1e8af5"},
+    {file = "exceptiongroup-1.1.3-py3-none-any.whl", hash = "sha256:343280667a4585d195ca1cf9cef84a4e178c4b6cf2274caef9859782b567d5e3"},
+    {file = "exceptiongroup-1.1.3.tar.gz", hash = "sha256:097acd85d473d75af5bb98e41b61ff7fe35efe6675e4f9370ec6ec5126d160e9"},
 ]
 
 [package.extras]
@@ -1336,7 +1301,6 @@ test = ["pytest (>=6)"]
 name = "execnet"
 version = "1.4.1"
 description = "execnet: rapid multi-Python deployment"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1351,7 +1315,6 @@ apipkg = ">=1.4"
 name = "flake8"
 version = "6.1.0"
 description = "the modular source code checker: pep8 pyflakes and co"
-category = "dev"
 optional = false
 python-versions = ">=3.8.1"
 files = [
@@ -1368,7 +1331,6 @@ pyflakes = ">=3.1.0,<3.2.0"
 name = "flaky"
 version = "3.7.0"
 description = "Plugin for nose or pytest that automatically reruns flaky tests."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1380,7 +1342,6 @@ files = [
 name = "flask"
 version = "2.1.3"
 description = "A simple framework for building complex web applications."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1403,7 +1364,6 @@ dotenv = ["python-dotenv"]
 name = "fqdn"
 version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 files = [
@@ -1415,7 +1375,6 @@ files = [
 name = "future"
 version = "0.18.3"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1426,7 +1385,6 @@ files = [
 name = "gitdb"
 version = "4.0.10"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1439,24 +1397,25 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.32"
+version = "3.1.37"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "GitPython-3.1.32-py3-none-any.whl", hash = "sha256:e3d59b1c2c6ebb9dfa7a184daf3b6dd4914237e7488a1730a6d8f6f5d0b4187f"},
-    {file = "GitPython-3.1.32.tar.gz", hash = "sha256:8d9b8cb1e80b9735e8717c9362079d3ce4c6e5ddeebedd0361b228c3a67a62f6"},
+    {file = "GitPython-3.1.37-py3-none-any.whl", hash = "sha256:5f4c4187de49616d710a77e98ddf17b4782060a1788df441846bddefbb89ab33"},
+    {file = "GitPython-3.1.37.tar.gz", hash = "sha256:f9b9ddc0761c125d5780eab2d64be4873fc6817c2899cbcb34b02344bdc7bc54"},
 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
 
+[package.extras]
+test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar"]
+
 [[package]]
 name = "granite-suite"
 version = "0.1.11b0"
 description = "granite is a collection of software to call, filter and work with genomic variants"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1476,7 +1435,6 @@ pytabix = ">=0.0.2"
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -1550,7 +1508,6 @@ test = ["objgraph", "psutil"]
 name = "h5py"
 version = "3.9.0"
 description = "Read and write HDF5 files from Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1584,7 +1541,6 @@ numpy = ">=1.17.3"
 name = "html5lib"
 version = "1.1"
 description = "HTML parser based on the WHATWG HTML specification"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1606,7 +1562,6 @@ lxml = ["lxml"]
 name = "humanfriendly"
 version = "1.44.9"
 description = "Human friendly output for text interfaces using Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1618,7 +1573,6 @@ files = [
 name = "hupper"
 version = "1.5"
 description = "Integrated process monitor for developing and reloading daemons."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -1634,7 +1588,6 @@ testing = ["mock", "pytest", "pytest-cov", "watchdog"]
 name = "idna"
 version = "2.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1646,7 +1599,6 @@ files = [
 name = "importlib-metadata"
 version = "6.8.0"
 description = "Read metadata from Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1664,28 +1616,26 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs
 
 [[package]]
 name = "importlib-resources"
-version = "6.0.1"
+version = "6.1.0"
 description = "Read resources from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-6.0.1-py3-none-any.whl", hash = "sha256:134832a506243891221b88b4ae1213327eea96ceb4e407a00d790bb0626f45cf"},
-    {file = "importlib_resources-6.0.1.tar.gz", hash = "sha256:4359457e42708462b9626a04657c6208ad799ceb41e5c58c57ffa0e6a098a5d4"},
+    {file = "importlib_resources-6.1.0-py3-none-any.whl", hash = "sha256:aa50258bbfa56d4e33fbd8aa3ef48ded10d1735f11532b8df95388cc6bdb7e83"},
+    {file = "importlib_resources-6.1.0.tar.gz", hash = "sha256:9d48dcccc213325e810fd723e7fbb45ccb39f6cf5c31f00cf2b965f5f10f3cb9"},
 ]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
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-testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
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+testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1697,7 +1647,6 @@ files = [
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 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1712,7 +1661,6 @@ six = "*"
 name = "isoduration"
 version = "20.11.0"
 description = "Operations with ISO 8601 durations"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1727,7 +1675,6 @@ arrow = ">=0.15.0"
 name = "itsdangerous"
 version = "2.1.2"
 description = "Safely pass data to untrusted environments and back."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1739,7 +1686,6 @@ files = [
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1757,7 +1703,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jmespath"
 version = "0.10.0"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1765,11 +1710,21 @@ files = [
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 ]
 
+[[package]]
+name = "jsonc-parser"
+version = "1.1.5"
+description = "A lightweight, native tool for parsing .jsonc files"
+optional = false
+python-versions = ">=3.5"
+files = [
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+
 [[package]]
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 version = "2.4"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
 files = [
@@ -1779,14 +1734,13 @@ files = [
 
 [[package]]
 name = "jsonschema"
-version = "4.19.0"
+version = "4.19.1"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -1813,7 +1767,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 name = "jsonschema-specifications"
 version = "2023.7.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1827,87 +1780,121 @@ referencing = ">=0.28.0"
 
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 ]
 
 [[package]]
 name = "markupsafe"
 version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1967,7 +1954,6 @@ files = [
 name = "matplotlib"
 version = "3.3.4"
 description = "Python plotting package"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2010,7 +1996,6 @@ python-dateutil = ">=2.1"
 name = "mccabe"
 version = "0.7.0"
 description = "McCabe checker, plugin for flake8"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2022,7 +2007,6 @@ files = [
 name = "moto"
 version = "4.0.3"
 description = "A library that allows your python tests to easily mock out the boto library"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2071,7 +2055,6 @@ xray = ["aws-xray-sdk (>=0.93,!=0.96)", "setuptools"]
 name = "negspy"
 version = "0.2.24"
 description = "Python NGS tools"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2080,21 +2063,19 @@ files = [
 
 [[package]]
 name = "netaddr"
-version = "0.8.0"
+version = "0.9.0"
 description = "A network address manipulation library for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "netaddr-0.8.0-py2.py3-none-any.whl", hash = "sha256:9666d0232c32d2656e5e5f8d735f58fd6c7457ce52fc21c98d45f2af78f990ac"},
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 ]
 
 [[package]]
 name = "numpy"
 version = "1.24.4"
 description = "Fundamental package for array computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2132,7 +2113,6 @@ files = [
 name = "openpyxl"
 version = "3.1.2"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2145,14 +2125,13 @@ et-xmlfile = "*"
 
 [[package]]
 name = "opensearch-py"
-version = "2.3.0"
+version = "2.3.1"
 description = "Python client for OpenSearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
 files = [
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 ]
 
 [package.dependencies]
@@ -2172,7 +2151,6 @@ kerberos = ["requests-kerberos"]
 name = "packaging"
 version = "23.1"
 description = "Core utilities for Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2184,7 +2162,6 @@ files = [
 name = "passlib"
 version = "1.7.4"
 description = "comprehensive password hashing framework supporting over 30 schemes"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2202,7 +2179,6 @@ totp = ["cryptography"]
 name = "pastedeploy"
 version = "1.5.2"
 description = "Load, configure, and compose WSGI applications and servers"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2217,7 +2193,6 @@ paste = ["Paste"]
 name = "pbkdf2"
 version = "1.3"
 description = "PKCS#5 v2.0 PBKDF2 Module"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2228,7 +2203,6 @@ files = [
 name = "pillow"
 version = "9.5.0"
 description = "Python Imaging Library (Fork)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2308,7 +2282,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 name = "pip-licenses"
 version = "3.5.5"
 description = "Dump the software license list of Python packages installed with pip."
-category = "dev"
 optional = false
 python-versions = "~=3.7"
 files = [
@@ -2324,14 +2297,13 @@ test = ["docutils", "pytest-cov", "pytest-pycodestyle", "pytest-runner"]
 
 [[package]]
 name = "pipdeptree"
-version = "2.12.0"
+version = "2.13.0"
 description = "Command line utility to show dependency tree of packages."
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -2342,7 +2314,6 @@ test = ["covdefaults (>=2.3)", "diff-cover (>=7.7)", "pip (>=23.2)", "pytest (>=
 name = "pkgutil-resolve-name"
 version = "1.3.10"
 description = "Resolve a name to an object."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2354,7 +2325,6 @@ files = [
 name = "plaster"
 version = "1.0"
 description = "A loader interface around multiple config file formats."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2373,7 +2343,6 @@ testing = ["pytest", "pytest-cov"]
 name = "plaster-pastedeploy"
 version = "0.6"
 description = "A loader implementing the PasteDeploy syntax to be used by plaster."
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2390,14 +2359,13 @@ testing = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "pluggy"
-version = "1.2.0"
+version = "1.3.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -2408,7 +2376,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "psutil"
 version = "5.9.5"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2433,100 +2400,97 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 
 [[package]]
 name = "psycopg2"
-version = "2.9.7"
+version = "2.9.8"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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 [[package]]
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 description = "psycopg2 - Python-PostgreSQL Database Adapter"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
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 [[package]]
 name = "ptable"
 version = "0.9.2"
 description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2537,7 +2501,6 @@ files = [
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2549,7 +2512,6 @@ files = [
 name = "pyasn1"
 version = "0.1.9"
 description = "ASN.1 types and codecs"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2561,7 +2523,6 @@ files = [
 name = "pybrowserid"
 version = "0.14.0"
 description = "Python library for the BrowserID Protocol"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2576,7 +2537,6 @@ requests = "*"
 name = "pycodestyle"
 version = "2.11.0"
 description = "Python style guide checker"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2588,7 +2548,6 @@ files = [
 name = "pycparser"
 version = "2.14"
 description = "C parser in Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2599,7 +2558,6 @@ files = [
 name = "pyflakes"
 version = "3.1.0"
 description = "passive checker of Python programs"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2611,7 +2569,6 @@ files = [
 name = "pyjwt"
 version = "2.8.0"
 description = "JSON Web Token implementation in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2629,7 +2586,6 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pyopenssl"
 version = "23.2.0"
 description = "Python wrapper module around the OpenSSL library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2648,7 +2604,6 @@ test = ["flaky", "pretend", "pytest (>=3.0.1)"]
 name = "pyparsing"
 version = "3.1.1"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -2663,7 +2618,6 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pyramid"
 version = "1.10.4"
 description = "The Pyramid Web Framework, a Pylons project"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -2690,7 +2644,6 @@ testing = ["coverage", "nose", "virtualenv", "webtest (>=1.3.1)", "zope.componen
 name = "pyramid-multiauth"
 version = "0.9.0"
 description = "pyramid_multiauth"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2705,7 +2658,6 @@ pyramid = "*"
 name = "pyramid-retry"
 version = "1.0"
 description = "An execution policy for Pyramid that supports retrying requests after certain failure exceptions."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2725,7 +2677,6 @@ testing = ["WebTest", "pytest", "pytest-cov"]
 name = "pyramid-tm"
 version = "2.5"
 description = "A package which allows Pyramid requests to join the active transaction"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2745,7 +2696,6 @@ testing = ["WebTest", "coverage (>=5.0)", "pytest", "pytest-cov"]
 name = "pyramid-translogger"
 version = "0.1"
 description = "access log logger tween (almost stolen from Paste.translogger)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2759,7 +2709,6 @@ setuptools = "*"
 name = "pysam"
 version = "0.21.0"
 description = "pysam - a python module for reading, manipulating and writing genomic data sets."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2793,7 +2742,6 @@ cython = "*"
 name = "pytabix"
 version = "0.1"
 description = "Python interface for tabix"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2802,14 +2750,13 @@ files = [
 
 [[package]]
 name = "pytest"
-version = "7.4.0"
+version = "7.4.2"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
@@ -2827,7 +2774,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
 name = "pytest-cov"
 version = "4.1.0"
 description = "Pytest plugin for measuring coverage."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2846,7 +2792,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
 name = "pytest-instafail"
 version = "0.5.0"
 description = "pytest plugin to show failures instantly"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2861,7 +2806,6 @@ pytest = ">=5"
 name = "pytest-mock"
 version = "3.11.1"
 description = "Thin-wrapper around the mock package for easier use with pytest"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2879,7 +2823,6 @@ dev = ["pre-commit", "pytest-asyncio", "tox"]
 name = "pytest-timeout"
 version = "2.1.0"
 description = "pytest plugin to abort hanging tests"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -2894,7 +2837,6 @@ pytest = ">=5.0.0"
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 version = "3.1.0"
 description = "pytest xdist plugin for distributed testing, most importantly across multiple CPUs"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2915,7 +2857,6 @@ testing = ["filelock"]
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 version = "2.8.2"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -2930,7 +2871,6 @@ six = ">=1.5"
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 description = "File type identification using libmagic"
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 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -2940,21 +2880,19 @@ files = [
 
 [[package]]
 name = "pytz"
-version = "2023.3"
+version = "2023.3.post1"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
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 [[package]]
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 version = "227"
 description = "Python for Window Extensions"
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 optional = false
 python-versions = "*"
 files = [
@@ -2974,32 +2912,57 @@ files = [
 
 [[package]]
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-version = "5.3.1"
+version = "6.0.1"
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 optional = false
 python-versions = "*"
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 version = "0.6.0"
 description = "rdflib extension adding JSON-LD parser and serializer"
-category = "main"
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 description = "Python client for Redis database and key-value store"
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 version = "1.1"
 description = "Forensic debugging WSGI middleware"
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 optional = false
 python-versions = "*"
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 description = "Python HTTP for Humans."
-category = "main"
 optional = false
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 name = "rfc3986"
 version = "1.5.0"
 description = "Validating URI References per RFC 3986"
-category = "main"
 optional = false
 python-versions = "*"
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 description = "Pure python rfc3986 validator"
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 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
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 ]
 
 [[package]]
 name = "rsa"
 version = "3.3"
 description = "Pure-Python RSA implementation"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3295,7 +3247,6 @@ pyasn1 = ">=0.1.3"
 name = "rutter"
 version = "0.4"
 description = "Py3k-compatible fork of Paste's urlmap"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3311,14 +3262,13 @@ testing = ["WebTest", "coverage", "pytest", "pytest-cov"]
 
 [[package]]
 name = "s3transfer"
-version = "0.6.1"
+version = "0.7.0"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "s3transfer-0.6.1-py3-none-any.whl", hash = "sha256:3c0da2d074bf35d6870ef157158641178a4204a6e689e82546083e31e0311346"},
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 ]
 
 [package.dependencies]
@@ -3329,14 +3279,13 @@ crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"]
 
 [[package]]
 name = "sentry-sdk"
-version = "1.29.2"
+version = "1.31.0"
 description = "Python client for Sentry (https://sentry.io)"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [package.dependencies]
@@ -3346,10 +3295,12 @@ urllib3 = {version = ">=1.26.11", markers = "python_version >= \"3.6\""}
 [package.extras]
 aiohttp = ["aiohttp (>=3.5)"]
 arq = ["arq (>=0.23)"]
+asyncpg = ["asyncpg (>=0.23)"]
 beam = ["apache-beam (>=2.12)"]
 bottle = ["bottle (>=0.12.13)"]
 celery = ["celery (>=3)"]
 chalice = ["chalice (>=1.16.0)"]
+clickhouse-driver = ["clickhouse-driver (>=0.2.0)"]
 django = ["django (>=1.8)"]
 falcon = ["falcon (>=1.4)"]
 fastapi = ["fastapi (>=0.79.0)"]
@@ -3359,6 +3310,7 @@ httpx = ["httpx (>=0.16.0)"]
 huey = ["huey (>=2)"]
 loguru = ["loguru (>=0.5)"]
 opentelemetry = ["opentelemetry-distro (>=0.35b0)"]
+opentelemetry-experimental = ["opentelemetry-distro (>=0.40b0,<1.0)", "opentelemetry-instrumentation-aiohttp-client (>=0.40b0,<1.0)", "opentelemetry-instrumentation-django (>=0.40b0,<1.0)", "opentelemetry-instrumentation-fastapi (>=0.40b0,<1.0)", "opentelemetry-instrumentation-flask (>=0.40b0,<1.0)", "opentelemetry-instrumentation-requests (>=0.40b0,<1.0)", "opentelemetry-instrumentation-sqlite3 (>=0.40b0,<1.0)", "opentelemetry-instrumentation-urllib (>=0.40b0,<1.0)"]
 pure-eval = ["asttokens", "executing", "pure-eval"]
 pymongo = ["pymongo (>=3.1)"]
 pyspark = ["pyspark (>=2.4.4)"]
@@ -3372,26 +3324,24 @@ tornado = ["tornado (>=5)"]
 
 [[package]]
 name = "setuptools"
-version = "68.0.0"
+version = "68.2.2"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "setuptools-68.2.2.tar.gz", hash = "sha256:4ac1475276d2f1c48684874089fefcd83bd7162ddaafb81fac866ba0db282a87"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
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+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
 name = "simplejson"
 version = "3.19.1"
 description = "Simple, fast, extensible JSON encoder/decoder for Python"
-category = "main"
 optional = false
 python-versions = ">=2.5, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3486,7 +3436,6 @@ files = [
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3496,33 +3445,30 @@ files = [
 
 [[package]]
 name = "smmap"
-version = "5.0.0"
+version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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-    {file = "smmap-5.0.0.tar.gz", hash = "sha256:c840e62059cd3be204b0c9c9f74be2c09d5648eddd4580d9314c3ecde0b30936"},
+    {file = "smmap-5.0.1-py3-none-any.whl", hash = "sha256:e6d8668fa5f93e706934a62d7b4db19c8d9eb8cf2adbb75ef1b675aa332b69da"},
+    {file = "smmap-5.0.1.tar.gz", hash = "sha256:dceeb6c0028fdb6734471eb07c0cd2aae706ccaecab45965ee83f11c8d3b1f62"},
 ]
 
 [[package]]
 name = "soupsieve"
-version = "2.4.1"
+version = "2.5"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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-    {file = "soupsieve-2.4.1.tar.gz", hash = "sha256:89d12b2d5dfcd2c9e8c22326da9d9aa9cb3dfab0a83a024f05704076ee8d35ea"},
+    {file = "soupsieve-2.5-py3-none-any.whl", hash = "sha256:eaa337ff55a1579b6549dc679565eac1e3d000563bcb1c8ab0d0fefbc0c2cdc7"},
+    {file = "soupsieve-2.5.tar.gz", hash = "sha256:5663d5a7b3bfaeee0bc4372e7fc48f9cff4940b3eec54a6451cc5299f1097690"},
 ]
 
 [[package]]
 name = "sparqlwrapper"
 version = "1.8.5"
 description = "SPARQL Endpoint interface to Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3541,7 +3487,6 @@ keepalive = ["keepalive (>=0.5)"]
 name = "sqlalchemy"
 version = "1.4.41"
 description = "Database Abstraction Library"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
@@ -3589,7 +3534,7 @@ files = [
 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine == \"aarch64\" or python_version >= \"3\" and platform_machine == \"ppc64le\" or python_version >= \"3\" and platform_machine == \"x86_64\" or python_version >= \"3\" and platform_machine == \"amd64\" or python_version >= \"3\" and platform_machine == \"AMD64\" or python_version >= \"3\" and platform_machine == \"win32\" or python_version >= \"3\" and platform_machine == \"WIN32\""}
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\")"}
 
 [package.extras]
 aiomysql = ["aiomysql", "greenlet (!=0.4.17)"]
@@ -3616,7 +3561,6 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "structlog"
 version = "19.2.0"
 description = "Structured Logging for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3637,7 +3581,6 @@ tests = ["coverage", "freezegun (>=0.2.8)", "pretend", "pytest (>=3.3.0)", "pyth
 name = "subprocess-middleware"
 version = "0.3"
 description = "Subprocess WSGI middleware and Pyramid tween."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3654,7 +3597,6 @@ test = ["WebTest", "pyramid", "pytest"]
 name = "supervisor"
 version = "4.2.5"
 description = "A system for controlling process state under UNIX"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3672,7 +3614,6 @@ testing = ["pytest", "pytest-cov"]
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -3684,7 +3625,6 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3694,14 +3634,13 @@ files = [
 
 [[package]]
 name = "tqdm"
-version = "4.66.0"
+version = "4.66.1"
 description = "Fast, Extensible Progress Meter"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "tqdm-4.66.0-py3-none-any.whl", hash = "sha256:39d459c7140b7890174e69d4d68d6291bc774a55b4bc5d93c0b760798ac5a03e"},
-    {file = "tqdm-4.66.0.tar.gz", hash = "sha256:cc6e7e52202d894e66632c5c8a9330bd0e3ff35d2965c93ca832114a3d865362"},
+    {file = "tqdm-4.66.1-py3-none-any.whl", hash = "sha256:d302b3c5b53d47bce91fea46679d9c3c6508cf6332229aa1e7d8653723793386"},
+    {file = "tqdm-4.66.1.tar.gz", hash = "sha256:d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7"},
 ]
 
 [package.dependencies]
@@ -3717,7 +3656,6 @@ telegram = ["requests"]
 name = "transaction"
 version = "3.1.0"
 description = "Transaction management for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -3737,7 +3675,6 @@ testing = ["coverage", "mock", "nose"]
 name = "translationstring"
 version = "1.3"
 description = "Utility library for i18n relied on by various Repoze and Pyramid packages"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3747,60 +3684,52 @@ files = [
 
 [[package]]
 name = "types-awscrt"
-version = "0.17.0"
+version = "0.19.1"
 description = "Type annotations and code completion for awscrt"
-category = "dev"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
-    {file = "types_awscrt-0.17.0-py3-none-any.whl", hash = "sha256:278c1a913098e226769cd28dc37643a2f360907353a7e8918e1bcdf93d4e34f2"},
-    {file = "types_awscrt-0.17.0.tar.gz", hash = "sha256:4214783a747af900a5f98ec020d52ecae5910b470fd636813637a45b82a97516"},
+    {file = "types_awscrt-0.19.1-py3-none-any.whl", hash = "sha256:68fffeb75396e9e7614cd930b2d52295f680230774750907bcafb56f11514043"},
+    {file = "types_awscrt-0.19.1.tar.gz", hash = "sha256:61833aa140e724a9098025610f4b8cde3dcf65b842631d7447378f9f5db4e1fd"},
 ]
 
 [[package]]
 name = "types-pyyaml"
-version = "6.0.12.11"
+version = "6.0.12.12"
 description = "Typing stubs for PyYAML"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "types-PyYAML-6.0.12.11.tar.gz", hash = "sha256:7d340b19ca28cddfdba438ee638cd4084bde213e501a3978738543e27094775b"},
-    {file = "types_PyYAML-6.0.12.11-py3-none-any.whl", hash = "sha256:a461508f3096d1d5810ec5ab95d7eeecb651f3a15b71959999988942063bf01d"},
+    {file = "types-PyYAML-6.0.12.12.tar.gz", hash = "sha256:334373d392fde0fdf95af5c3f1661885fa10c52167b14593eb856289e1855062"},
+    {file = "types_PyYAML-6.0.12.12-py3-none-any.whl", hash = "sha256:c05bc6c158facb0676674b7f11fe3960db4f389718e19e62bd2b84d6205cfd24"},
 ]
 
 [[package]]
 name = "types-s3transfer"
-version = "0.6.1"
+version = "0.7.0"
 description = "Type annotations and code completion for s3transfer"
-category = "dev"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
-    {file = "types_s3transfer-0.6.1-py3-none-any.whl", hash = "sha256:6d1ac1dedac750d570428362acdf60fdd4f277b0788855c3894d3226756b2bfb"},
-    {file = "types_s3transfer-0.6.1.tar.gz", hash = "sha256:75ac1d7143d58c1e6af467cfd4a96c67ee058a3adf7c249d9309999e1f5f41e4"},
+    {file = "types_s3transfer-0.7.0-py3-none-any.whl", hash = "sha256:ae9ed9273465d9f43da8b96307383da410c6b59c3b2464c88d20b578768e97c6"},
+    {file = "types_s3transfer-0.7.0.tar.gz", hash = "sha256:aca0f2486d0a3a5037cd5b8f3e20a4522a29579a8dd183281ff0aa1c4e2c8aa7"},
 ]
 
-[package.dependencies]
-types-awscrt = "*"
-
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
+version = "4.8.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
-    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
+    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
+    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
 ]
 
 [[package]]
 name = "uptime"
 version = "3.0.1"
 description = "Cross-platform uptime library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3811,7 +3740,6 @@ files = [
 name = "uri-template"
 version = "1.3.0"
 description = "RFC 6570 URI Template Processor"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3826,7 +3754,6 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 name = "urllib3"
 version = "1.26.16"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -3843,7 +3770,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "venusian"
 version = "1.2.0"
 description = "A library for deferring decorator actions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3859,7 +3785,6 @@ testing = ["coverage", "pytest", "pytest-cov"]
 name = "waitress"
 version = "2.1.2"
 description = "Waitress WSGI server"
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -3875,7 +3800,6 @@ testing = ["coverage (>=5.0)", "pytest", "pytest-cover"]
 name = "webcolors"
 version = "1.13"
 description = "A library for working with the color formats defined by HTML and CSS."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3891,7 +3815,6 @@ tests = ["pytest", "pytest-cov"]
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3903,7 +3826,6 @@ files = [
 name = "webob"
 version = "1.8.7"
 description = "WSGI request and response object"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*"
 files = [
@@ -3917,18 +3839,17 @@ testing = ["coverage", "pytest (>=3.1.0)", "pytest-cov", "pytest-xdist"]
 
 [[package]]
 name = "websocket-client"
-version = "1.6.1"
+version = "1.6.3"
 description = "WebSocket client for Python with low level API options"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "websocket-client-1.6.1.tar.gz", hash = "sha256:c951af98631d24f8df89ab1019fc365f2227c0892f12fd150e935607c79dd0dd"},
-    {file = "websocket_client-1.6.1-py3-none-any.whl", hash = "sha256:f1f9f2ad5291f0225a49efad77abf9e700b6fef553900623060dad6e26503b9d"},
+    {file = "websocket-client-1.6.3.tar.gz", hash = "sha256:3aad25d31284266bcfcfd1fd8a743f63282305a364b8d0948a43bd606acc652f"},
+    {file = "websocket_client-1.6.3-py3-none-any.whl", hash = "sha256:6cfc30d051ebabb73a5fa246efdcc14c8fbebbd0330f8984ac3bb6d9edd2ad03"},
 ]
 
 [package.extras]
-docs = ["Sphinx (>=3.4)", "sphinx-rtd-theme (>=0.5)"]
+docs = ["Sphinx (>=6.0)", "sphinx-rtd-theme (>=1.1.0)"]
 optional = ["python-socks", "wsaccel"]
 test = ["websockets"]
 
@@ -3936,7 +3857,6 @@ test = ["websockets"]
 name = "webtest"
 version = "2.0.35"
 description = "Helper to test WSGI applications"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -3958,7 +3878,6 @@ tests = ["PasteDeploy", "WSGIProxy2", "coverage", "mock", "nose (<1.3.0)", "pyqu
 name = "werkzeug"
 version = "2.1.2"
 description = "The comprehensive WSGI web application library."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -3971,14 +3890,13 @@ watchdog = ["watchdog"]
 
 [[package]]
 name = "wheel"
-version = "0.41.1"
+version = "0.41.2"
 description = "A built-package format for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "wheel-0.41.1-py3-none-any.whl", hash = "sha256:473219bd4cbedc62cea0cb309089b593e47c15c4a2531015f94e4e3b9a0f6981"},
-    {file = "wheel-0.41.1.tar.gz", hash = "sha256:12b911f083e876e10c595779709f8a88a59f45aacc646492a67fe9ef796c1b47"},
+    {file = "wheel-0.41.2-py3-none-any.whl", hash = "sha256:75909db2664838d015e3d9139004ee16711748a52c8f336b52882266540215d8"},
+    {file = "wheel-0.41.2.tar.gz", hash = "sha256:0c5ac5ff2afb79ac23ab82bab027a0be7b5dbcf2e54dc50efe4bf507de1f7985"},
 ]
 
 [package.extras]
@@ -3988,7 +3906,6 @@ test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
 name = "wsgiproxy2"
 version = "0.4.2"
 description = "UNKNOWN"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4003,7 +3920,6 @@ webob = "*"
 name = "xlrd"
 version = "1.2.0"
 description = "Library for developers to extract data from Microsoft Excel (tm) spreadsheet files"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -4015,7 +3931,6 @@ files = [
 name = "xmltodict"
 version = "0.13.0"
 description = "Makes working with XML feel like you are working with JSON"
-category = "dev"
 optional = false
 python-versions = ">=3.4"
 files = [
@@ -4025,25 +3940,23 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.16.2"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
-    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
+    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [[package]]
 name = "zope-deprecation"
 version = "4.4.0"
 description = "Zope Deprecation Infrastructure"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4062,7 +3975,6 @@ test = ["zope.testrunner"]
 name = "zope-interface"
 version = "5.5.2"
 description = "Interfaces for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -4116,7 +4028,6 @@ testing = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
 name = "zope-sqlalchemy"
 version = "1.6"
 description = "Minimal Zope/SQLAlchemy transaction integration"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -4135,5 +4046,5 @@ test = ["zope.testing"]
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.8.1,<3.10"
-content-hash = "cbc358e65b7b5edfa5adc017d40aedb489dcfff4fa0efb9934283c4ff14ac740"
+python-versions = ">=3.8.1,<3.12"
+content-hash = "5a09566ec0cba9d473912bfb0d325671f3e98647a8ef6b7b9c41fabd503b84af"
diff --git a/pyproject.toml b/pyproject.toml
index 2ce17448f8..a1eff08529 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,7 +1,7 @@
 [tool.poetry]
 # Note: Various modules refer to this system as "encoded", not "cgap-portal".
 name = "encoded"
-version = "14.3.1"
+version = "15.0.0"
 description = "Computational Genome Analysis Platform"
 authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
 license = "MIT"
@@ -31,15 +31,17 @@ classifiers = [
     # Specify the Python versions you support here. In particular, ensure
     # that you indicate whether you support Python 2, Python 3 or both.
     'Programming Language :: Python :: 3',
-    'Programming Language :: Python :: 3.7',
     'Programming Language :: Python :: 3.8',
+    'Programming Language :: Python :: 3.9',
+    'Programming Language :: Python :: 3.10',
+    'Programming Language :: Python :: 3.11',
 ]
 
 [tool.poetry.dependencies]
-python = ">=3.8.1,<3.10"
-awscli = ">=1.27.79"
-boto3 = "^1.26.133"
-botocore = "^1.29.79"
+python = ">=3.8.1,<3.12"
+awscli = ">=1.29.62"
+boto3 = "^1.28.62"
+botocore = "^1.31.62"
 certifi = ">=2021.5.30"
 chardet = "3.0.4"
 codeguru-profiler-agent = "^1.2.4"
@@ -48,9 +50,9 @@ codeguru-profiler-agent = "^1.2.4"
 # of cryptography.hazmat.bindings._rust in cryptography package. 2023-04-21.
 cryptography = "39.0.2"
 colorama = "0.3.3"
-dcicpyvcf = "1.0.0.1b0"  # "^1.0.0"
-dcicsnovault = "^10.0.2"
-dcicutils = "^7.7.0"
+dcicpyvcf = "^3.0.0"
+dcicsnovault = "^11.0.0"
+dcicutils = "^8.0.0"
 elasticsearch = "7.13.4"
 execnet = "1.4.1"
 future = ">=0.18.2,<1"
@@ -88,7 +90,7 @@ python-dateutil = "^2.8.2"
 # python-magic is presently pinned to 0.4.15 in lockstep with dcicsnovault's requirements. See explanation there.
 python_magic = ">=0.4.24,<1"
 pytz = ">=2021.3"
-PyYAML = "5.3.1"
+PyYAML = "^6.0.1"
 rdflib = "^4.2.2"
 rdflib-jsonld = ">=0.5.0,<1.0.0"
 # repoze.debug is needed to use pyramid.pserve - Will Feb 17 2022
@@ -122,12 +124,11 @@ WSGIProxy2 = "0.4.2"
 "zope.deprecation" = "^4.4.0"
 "zope.interface" = ">=4.7.2,<6"
 "zope.sqlalchemy" = "1.6"
-pyyaml = "5.3.1"
 
 [tool.poetry.dev-dependencies]
 # PyCharm says boto3-stubs contains useful type hints
-boto3-stubs = "^1.26.79"
-botocore-stubs = "^1.29.79"
+boto3-stubs = "^1.28.62"
+botocore-stubs = "^1.31.62"
 coverage = ">=6.2"
 codacy-coverage = ">=1.3.11"
 coveralls = ">=3.3.1"
@@ -179,6 +180,7 @@ dis2pheno = "encoded.commands.parse_hpoa:main"
 es-index-data = "snovault.commands.es_index_data:main"
 export-data = "encoded.commands.export_data:main"
 extract-test-data = "encoded.commands.extract_test_data:main"
+generate-local-access-key = "snovault.commands.generate_local_access_key:main"
 import-data = "encoded.commands.import_data:main"
 jsonld-rdf = "encoded.commands.jsonld_rdf:main"
 load-access-keys = "encoded.commands.load_access_keys:main"
@@ -203,6 +205,7 @@ submission-test = "encoded.commands.submission_test:main"
 # submit-metadata-bundle = "encoded.commands.submit_metadata_bundle:main"
 update-inserts-from-server = "encoded.commands.update_inserts_from_server:main"
 verify-item = "encoded.commands.verify_item:main"
+view-local-object= "snovault.commands.view_local_object:main"
 # cgap-specific commands
 clear-variants-and-genes = "encoded.commands.clear_variants_and_genes:main"
 gene-table-intake = "encoded.commands.gene_table_intake:main"
diff --git a/src/encoded/ingestion/table_utils.py b/src/encoded/ingestion/table_utils.py
index 3a9c825267..f5714680f5 100644
--- a/src/encoded/ingestion/table_utils.py
+++ b/src/encoded/ingestion/table_utils.py
@@ -3,7 +3,7 @@
 import io
 import json
 import logging
-from collections import Mapping
+from collections.abc import Mapping
 from ..util import resolve_file_path
 
 logger = logging.getLogger(__name__)
diff --git a/src/encoded/schemas/access_key.json b/src/encoded/schemas/access_key.json
deleted file mode 100644
index af8c34dca7..0000000000
--- a/src/encoded/schemas/access_key.json
+++ /dev/null
@@ -1,69 +0,0 @@
-{
-    "title": "Admin access key",
-    "$id": "/profiles/access_key.json",
-    "$schema": "https://json-schema.org/draft/2020-12/schema",
-    "required": [],
-    "additionalProperties": false,
-    "mixinProperties": [
-        {
-            "$ref": "mixins.json#/schema_version"
-        },
-        {
-            "$ref": "mixins.json#/uuid"
-        },
-        {
-            "$ref": "mixins.json#/submitted"
-        },
-        {
-            "$ref": "mixins.json#/modified"
-        }
-    ],
-    "type": "object",
-    "properties": {
-        "schema_version": {
-            "default": "1"
-        },
-        "status": {
-            "title": "Status",
-            "type": "string",
-            "default": "current",
-            "enum": [
-                "current",
-                "deleted"
-            ]
-        },
-        "user": {
-            "title": "User",
-            "comment": "Only admins are allowed to set this value.",
-            "type": "string",
-            "linkTo": "User"
-        },
-        "description": {
-            "title": "Description",
-            "type": "string",
-            "formInput": "textarea"
-        },
-        "access_key_id": {
-            "title": "Access key ID",
-            "comment": "Only admins are allowed to set this value.",
-            "type": "string",
-            "uniqueKey": true
-        },
-        "secret_access_key_hash": {
-            "title": "Secret access key Hash",
-            "comment": "Only admins are allowed to set this value.",
-            "type": "string"
-        },
-        "expiration_date": {
-            "Title": "Expiration Date",
-            "comment": "Only admins are allowed to set this value.",
-            "type": "string",
-            "permission": "restricted_fields"
-        }
-    },
-    "facets": {
-        "user.display_title": {
-            "title": "User Name"
-        }
-    }
-}
diff --git a/src/encoded/tests/test_schemas.py b/src/encoded/tests/test_schemas.py
index 1fbe466fb9..0599a93a72 100644
--- a/src/encoded/tests/test_schemas.py
+++ b/src/encoded/tests/test_schemas.py
@@ -249,7 +249,7 @@ def test_linkTo_saves_uuid(root, bgm_user, institution):
 
 
 def test_mixinProperties():
-    schema = load_schema('encoded:schemas/access_key.json')
+    schema = load_schema('snovault:schemas/access_key.json')
     assert schema['properties']['uuid']['type'] == 'string'
 
 
diff --git a/src/encoded/types/access_key.py b/src/encoded/types/access_key.py
deleted file mode 100644
index 5fe8e01ee1..0000000000
--- a/src/encoded/types/access_key.py
+++ /dev/null
@@ -1,161 +0,0 @@
-"""Access_key types file."""
-
-from pyramid.view import view_config
-from pyramid.security import (
-    Allow,
-    Deny,
-    Authenticated,
-    Everyone,
-)
-from pyramid.settings import asbool
-import datetime
-from .base import (
-    Item,
-    DELETED_ACL,
-    ONLY_ADMIN_VIEW_ACL,
-)
-from ..authentication import (
-    generate_password,
-    generate_user,
-    CRYPT_CONTEXT,
-)
-from snovault import (
-    collection,
-    load_schema,
-)
-from snovault.crud_views import (
-    collection_add,
-    item_edit,
-)
-from snovault.validators import (
-    validate_item_content_post,
-)
-from snovault.util import debug_log
-
-@collection(
-    name='access-keys',
-    unique_key='access_key:access_key_id',
-    properties={
-        'title': 'Access keys',
-        'description': 'Programmatic access keys',
-    },
-    acl=[
-        (Allow, Authenticated, 'add'),
-        (Allow, 'group.admin', 'list'),
-        (Allow, 'group.read-only-admin', 'list'),
-        (Allow, 'remoteuser.INDEXER', 'list'),
-        (Allow, 'remoteuser.EMBED', 'list'),
-        (Deny, Everyone, 'list'),
-    ])
-class AccessKey(Item):
-    """AccessKey class."""
-    ACCESS_KEY_EXPIRATION_TIME = 90  # days
-    item_type = 'access_key'
-    schema = load_schema('encoded:schemas/access_key.json')
-    name_key = 'access_key_id'
-    embedded_list = []
-
-    STATUS_ACL = {
-        'current': [(Allow, 'role.owner', ['view', 'edit'])] + ONLY_ADMIN_VIEW_ACL,
-        'deleted': DELETED_ACL,
-    }
-
-    @classmethod
-    def create(cls, registry, uuid, properties, sheets=None):
-        """ Sets the access key timeout 90 days from creation. """
-        properties['expiration_date'] = (datetime.datetime.utcnow() + datetime.timedelta(
-            days=cls.ACCESS_KEY_EXPIRATION_TIME)).isoformat()
-        return super().create(registry, uuid, properties, sheets)
-
-    def __ac_local_roles__(self):
-        """grab and return user as owner."""
-        owner = 'userid.%s' % self.properties['user']
-        return {owner: 'role.owner'}
-
-    def __json__(self, request):
-        """delete the secret access key has from the object when used."""
-        properties = super(AccessKey, self).__json__(request)
-        del properties['secret_access_key_hash']
-        return properties
-
-    def update(self, properties, sheets=None):
-        """smth."""
-        # make sure PUTs preserve the secret access key hash
-        if 'secret_access_key_hash' not in properties:
-            new_properties = self.properties.copy()
-            new_properties.update(properties)
-            properties = new_properties
-        # set new expiration
-        properties['expiration_date'] = (datetime.datetime.utcnow() + datetime.timedelta(
-            days=self.ACCESS_KEY_EXPIRATION_TIME)).isoformat()
-        self._update(properties, sheets)
-
-    class Collection(Item.Collection):
-        pass
-
-
-# access keys have view permissions for update so readonly admin and the like
-# can create access keys to download files.
-@view_config(context=AccessKey.Collection, request_method='POST',
-             permission='add',
-             validators=[validate_item_content_post])
-@debug_log
-def access_key_add(context, request):
-    """smth."""
-    crypt_context = request.registry[CRYPT_CONTEXT]
-
-    if 'access_key_id' not in request.validated:
-        request.validated['access_key_id'] = generate_user()
-
-    if 'user' not in request.validated:
-        request.validated['user'], = [
-            principal.split('.', 1)[1]
-            for principal in request.effective_principals
-            if principal.startswith('userid.')
-        ]
-
-    password = None
-    if 'secret_access_key_hash' not in request.validated:
-        password = generate_password()
-        request.validated['secret_access_key_hash'] = crypt_context.hash(password)
-
-    result = collection_add(context, request)
-
-    if password is None:
-        result['secret_access_key'] = None
-    else:
-        result['secret_access_key'] = password
-
-    result['access_key_id'] = request.validated['access_key_id']
-    result['description'] = request.validated.get('description', "")
-    return result
-
-
-@view_config(name='reset-secret', context=AccessKey,
-             permission='add',
-             request_method='POST', subpath_segments=0)
-@debug_log
-def access_key_reset_secret(context, request):
-    """smth."""
-    request.validated = context.properties.copy()
-    crypt_context = request.registry[CRYPT_CONTEXT]
-    password = generate_password()
-    new_hash = crypt_context.hash(password)
-    request.validated['secret_access_key_hash'] = new_hash
-    result = item_edit(context, request, render=False)
-    result['access_key_id'] = request.validated['access_key_id']
-    result['secret_access_key'] = password
-    return result
-
-
-@view_config(context=AccessKey, permission='view_raw', request_method='GET',
-             name='raw')
-@debug_log
-def access_key_view_raw(context, request):
-    """smth."""
-    if asbool(request.params.get('upgrade', True)):
-        properties = context.upgrade_properties()
-    else:
-        properties = context.properties.copy()
-    del properties['secret_access_key_hash']
-    return properties