diff --git a/portal_objects/file_reference.yaml b/portal_objects/file_reference.yaml index 1a6a036..81d1b83 100644 --- a/portal_objects/file_reference.yaml +++ b/portal_objects/file_reference.yaml @@ -9,38 +9,3 @@ format: tar_gz version: hg38 uuid: 7a33ce65-80f4-4c65-8229-8c2bbe0c1445 accession: GAPFI6BNMYRO - ---- - -################################################################ -# Datasource for the driver catalog -################################################################ -name: cgap_genes -description: Genes supported by CGAP. | - Build hg38/GRCh38. -format: tsv_gz -version: 0.4.6 -uuid: 335f7c0f-640e-44b9-a0da-bbe2728f782c -accession: GAPFI6BQNY5O - ---- - -name: gene_panel_hartwig -description: Genes to add to the driver catalog. | - From Hartwig Medical Foundation. | - Build hg38/GRCh38. -format: tsv_gz -version: v09132022 -uuid: bd334693-b83e-4709-9d96-d8cc3f524848 -accession: GAPFI6BNWA1O - ---- - -name: somatic_hotspot_mutations -description: Somatic hotspot locations. | - From Hartwig Medical Foundation. | - Build hg38/GRCh38. -format: vcf_gz -version: v09132022 -uuid: 19f548db-5491-464c-babd-a9f4f0b2c8c4 -accession: GAPFI6BNWA90 diff --git a/portal_objects/metaworkflows/WGS_CNV_somatic_ascat.yaml b/portal_objects/metaworkflows/WGS_CNV_somatic_ascat.yaml index 3af99e5..dc0fce3 100644 --- a/portal_objects/metaworkflows/WGS_CNV_somatic_ascat.yaml +++ b/portal_objects/metaworkflows/WGS_CNV_somatic_ascat.yaml @@ -121,7 +121,7 @@ workflows: config: instance_type: - c5.4xlarge - ebs_size: 1.5x + ebs_size: "1.5x" EBS_optimized: True spot_instance: True run_name: run_ascat @@ -165,7 +165,7 @@ workflows: config: instance_type: - t3.xlarge - ebs_size: 1.5x + ebs_size: "1.5x" EBS_optimized: True spot_instance: True run_name: run_putative_drivers_cnv