From a4d9d8ba2413281c5d09d91049d7cfd73de742a2 Mon Sep 17 00:00:00 2001 From: Michele Date: Wed, 29 Mar 2023 17:30:44 -0400 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index e7068e2..6f2fb4f 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ This repository contains components for the CGAP pipeline for Structural Variant * CWL workflow descriptions * CGAP Portal *Workflow* and *MetaWorkflow* objects * CGAP Portal *Software*, *FileFormat*, and *FileReference* objects - * ECR (Docker) source files, which allow for creation of public Docker images (using `docker build`) or private dynamically-generated ECR images (using [*cgap pipeline utils*](https://github.com/dbmi-bgm/cgap-pipeline-utils/) `pipeline_deploy`) + * ECR (Docker) source files, which allow for creation of public Docker images (using `docker build`) or private dynamically-generated ECR images (using [*portal pipeline utils*](https://github.com/dbmi-bgm/portal-pipeline-utils/) `pipeline_deploy`) The pipeline starts from analysis-ready `bam` files and produces `vcf` files containing calls for SVs as output. Documentation for all CGAP Pipelines can now be found here: