-
Notifications
You must be signed in to change notification settings - Fork 1
/
pyproject.toml
109 lines (86 loc) · 3.15 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
[tool.poetry]
name = "submit_cgap"
version = "4.2.0"
description = "Support for uploading file submissions to the Clinical Genomics Analysis Platform (CGAP)."
authors = ["4DN-DCIC Team <[email protected]>"]
license = "MIT"
readme = "README.rst"
keywords = ["submit cgap", "submitcgap"]
homepage = "https://github.com/dbmi-bgm/SubmitCGAP"
repository = "https://github.com/dbmi-bgm/SubmitCGAP.git"
packages = [
{ include="submit_cgap", from="." }
]
classifiers = [
# How mature is this project? Common values are
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
'Development Status :: 4 - Beta',
# Indicate who your project is intended for
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'Topic :: Database :: Database Engines/Servers',
# Pick your license as you wish (should match "license" above)
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Programming Language :: Python :: 3.12'
]
include = [
"LICENSE",
]
[tool.poetry.dependencies]
python = ">=3.8.1,<3.13"
awscli = "^1.27.79"
# boto3 = "^1.26.79"
dcicutils = "^8.13.0"
requests = "^2.28.2"
[tool.poetry.dev-dependencies]
# PyCharm says boto3-stubs contains useful type hints
# boto3-stubs = "^1.26.79"
# Coverage
codacy-coverage = ">=1.3.11"
coverage = ">=6.5.0"
# Loaded manually in GA workflow for coverage because a dependency on 2to3
# in its docopts dependency makes a problem for laoding it here in poetry. -kmp 7-Apr-2023
# coveralls = ">=3.3.1"
# Linting generally
flake8 = ">=3.9.2"
# pygments is used by PyCharm
pygments = ">=2.14.0"
# PyTest and its auxiliary support files
pytest = ">=7.2.1" # ">=6.2.5"
pytest-cov = ">=4.0.0" # "2.12.1" # >=
pytest-mock = ">=3.10.0" # 3.6.1" # >=
pytest-runner = ">=6.0.0" # "5.3.1" # >=
# Docs build dependencies
sphinx = ">=3.5.4" # should be 5.1.1?
sphinx-rtd-theme = ">=1.2.0"
[tool.poetry.scripts]
check-submission= "submit_cgap.scripts.check_submission:main"
make-sample-fastq-file = "submit_cgap.scripts.make_sample_fastq_file:main"
publish-to-pypi = "dcicutils.scripts.publish_to_pypi:main"
resume-uploads = "submit_cgap.scripts.resume_uploads:main"
show-submission-info = "submit_cgap.scripts.show_submission_info:main"
show-upload-info = "submit_cgap.scripts.show_upload_info:main"
submit-genelist = "submit_cgap.scripts.submit_genelist:main"
submit-metadata-bundle = "submit_cgap.scripts.submit_metadata_bundle:main"
submit-ontology = "submit_cgap.scripts.submit_ontology:main"
upload-item-data = "submit_cgap.scripts.upload_item_data:main"
[tool.coverage.report]
# https://coverage.readthedocs.io/en/latest/config.html
exclude_lines = [
"if __name__ == .__main__.:",
"pragma: no cover"
]
[build-system]
requires = ["poetry_core>=1.0.0"]
build-backend = "poetry.core.masonry.api"