docker-compose-ingest.yml

version: '2.4'
services:

  pg:
    image: postgres:13.1
    environment:
      - POSTGRES_PASSWORD=${ALYX_DB_PASSWORD?set ALYX_DB_PASSWORD in .env}
    healthcheck:
      test: [ "CMD", "/usr/bin/psql", "-U", "postgres", "-c", "\\l" ]
      timeout: 5s
      retries: 60
      interval: 1s
    volumes:
      - /tmp/postgresql/data:/var/lib/postgresql/data
    networks:
      - ibl-dev

  datajoint-ingest:
    build:
      context: .
      dockerfile: Dockerfile.ingest
    env_file: .env
    init: true
    depends_on:
      pg:
          condition: service_healthy
    environment:
      - PGUSER=${ALYX_DB_USER?set ALYX_DB_USER in .env}
      - PGHOST=${ALYX_DB_HOST?set ALYX_DB_HOST in .env}
      - PGPASSWORD=${ALYX_DB_PASSWORD?set ALYX_DB_PASSWORD in .env}
      - ALYX_DL_DATE=${ALYX_DL_DATE?set ALYX_DL_DATE in .env}
      - ALYX_DL_USER=${ALYX_DL_USER?set ALYX_DL_USER in .env}
      - ALYX_DL_PASSWORD=${ALYX_DL_PASSWORD?set ALYX_DL_PASSWORD in .env}
    volumes:
      - ./notebooks:/notebooks
      - ./images:/images
      - .:/src/IBL-pipeline
      - ./data:/data
      - ./root/.one_params:/root/.one_params
      - /tmp/alyx_data:/tmp
    ports:
      - "8888:8888"
      - "8889:8889"
    networks:
      - ibl-dev
    command: ["dev"]

networks:
  ibl-dev: