From e72554912873a5345589097f2de301e990a73e00 Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Wed, 30 Oct 2024 09:01:07 +0000 Subject: [PATCH 1/7] script modification of nndss --- scripts/us_cdc/nndss_annual_tables/config.py | 280 +++++++++ .../download_annual_data.py | 132 +++++ .../us_cdc/nndss_annual_tables/place_map.py | 166 ++++++ .../process_annual_demographics.py | 405 ++++++++++++++ .../process_annual_reporting.py | 529 ++++++++++++++++++ 5 files changed, 1512 insertions(+) create mode 100644 scripts/us_cdc/nndss_annual_tables/config.py create mode 100644 scripts/us_cdc/nndss_annual_tables/download_annual_data.py create mode 100644 scripts/us_cdc/nndss_annual_tables/place_map.py create mode 100644 scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py create mode 100644 scripts/us_cdc/nndss_annual_tables/process_annual_reporting.py diff --git a/scripts/us_cdc/nndss_annual_tables/config.py b/scripts/us_cdc/nndss_annual_tables/config.py new file mode 100644 index 0000000000..50586b03b6 --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/config.py @@ -0,0 +1,280 @@ +_PV_MAP = { + 'confirmed': { + 'medicalStatus': 'dcs:ConfirmedCase' + }, + 'probable': { + 'medicalStatus': 'dcs:ProbableCase' + }, + 'deaths': { + 'medicalStatus': 'dcs:PatientDeceased' + }, + 'pediatric mortality': { + 'medicalStatus': 'dcs:PediatricMortality' + }, + 'all serotypes': { + 'serotype': 'dcs:AllSerotypes' + }, + 'serotype b': { + 'serotype': 'dcs:SerotypeB' + }, + 'unknown serotype': { + 'serotype': 'dcs:UnknownSerotype' + }, + 'non-b serotype': { + 'serotype': 'dcs:NonSerotypeB' + }, + 'other serogroups': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'nontypeable': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'unknown serogroup': { + 'serogroup': 'dcs:UnknownSerogroups' + }, + 'all groups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'all serogroups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'serogroups acwy': { + 'serogroup': 'dcs:ACWYSerogroup' + }, + 'serogroup b': { + 'serogroup': 'dcs:SerogroupB' + }, + 'group a': { + 'serogroup': 'dcs:SerogroupA' + }, + 'perinatal infection': { + 'medicalCondition': 'dcs:PerinatalInfection' + }, + 'acute': { + 'medicalCondition': 'dcs:AcuteCondition' + }, + 'chronic': { + 'medicalCondition': 'dcs:ChronicCondition' + }, + 'imported': { + 'medicalStatus': 'dcs:ImportedCase' + }, + 'indigenous': { + 'medicalStatus': 'dcs:IndigenousCase' + }, + 'clinical': { + 'medicalStatus': 'dcs:ClinicalCase' + }, + 'neuroinvasive': { + 'medicalCondition': 'dcs:NeuroinvasiveDisease' + }, + 'non-neuroinvasive': { + 'medicalCondition': 'dcs:NonNeuroinvasiveDisease' + }, + 'congenital': { + 'medicalCondition': 'dcs:CongenitalDisease' + }, + 'non-congenital': { + 'medicalCondition': 'dcs:NonCongenitalDisease' + }, + 'drug resistant': { + 'medicalCondition': 'dcs:DrugResistantDisease' + }, + 'nondrug resistant': { + 'medicalCondition': 'dcs:NonDrugResistantDisease' + }, + 'invasive disease': { + 'medicalCondition': 'dcs:InvasiveDisease' + }, + 'post-diarrheal': { + 'medicalCondition': 'dcs:PostDiarrheal' + }, + '<1 yr': { + 'age': '[- 1 Years]' + }, + '1-4 yrs': { + 'age': '[1 4 Years]' + }, + '5-14 yrs': { + 'age': '[5 14 Years]' + }, + '15-24 yrs': { + 'age': '[15 24 Years]' + }, + '25-39 yrs': { + 'age': '[25 39 Years]' + }, + '40-64 yrs': { + 'age': '[40 64 Years]' + }, + '≥65 yrs': { + 'age': '[65 - Years]' + }, + 'age <5 years': { + 'age': '[- 5 Years]' + }, + 'age not stated': { + 'age': 'dcs:USC_AgeNotStated' + }, + 'male': { + 'gender': 'dcs:Male' + }, + 'female': { + 'gender': 'dcs:Female' + }, + 'sex not stated': { + 'gender': 'dcs:CDC_GenderUnknownOrNotStated' + }, + 'american indian or alaska native': { + 'race': 'dcs:AmericanIndianAndAlaskaNativeAlone' + }, + 'american indian or alaska native': { + 'race': 'dcs:AmericanIndianAndAlaskaNativeAlone' + }, + 'asian or pacific islander': { + 'race': 'dcs:AsianOrPacificIslander' + }, + 'asian or pacific islander': { + 'race': 'dcs:AsianOrPacificIslander' + }, + 'black or african american': { + 'race': 'dcs:BlackOrAfricanAmericanAlone' + }, + 'black': { + 'race': 'dcs:Black' + }, + 'white': { + 'race': 'dcs:White' + }, + 'other race': { + 'race': 'dcs:CDC_OtherRace' + }, + 'other or multi-race ¶': { + 'race': 'dcs:CDC_OtherRace' + }, + 'race not stated': { + 'race': 'dcs:CDC_RaceUnknownOrNotStated' + }, + 'hispanic': { + 'ethnicity': 'dcs:HispanicOrLatino' + }, + 'hispanic or latino': { + 'ethnicity': 'dcs:HispanicOrLatino' + }, + 'non-hispanic/latino': { + 'ethnicity': 'dcs:NotHispanicOrLatino' + }, + 'non-hispanic': { + 'ethnicity': 'dcs:NotHispanicOrLatino' + }, + 'ethnicity not stated': { + 'ethnicity': 'dcs:CDC_EthnicityUnknownOrNotStated' + }, + 'confirmed': { + 'medicalStatus': 'dcs:ConfirmedCase' + }, + 'probable': { + 'medicalStatus': 'dcs:ProbableCase' + }, + 'pediatric mortality': { + 'medicalStatus': 'dcs:PediatricMortality' + }, + 'deaths': { + 'medicalStatus': 'dcs:PatientDeceased' + }, + 'age <5': { + 'age': '[- 5 Years]' + }, + 'age < 5': { + 'age': '[- 5 Years]' + }, + 'age <5 years': { + 'age': '[- 5 Years]' + }, + 'age < 5 years': { + 'age': '[- 5 Years]' + }, + 'all serotypes': { + 'serotype': 'dcs:AllSerotypes' + }, + 'serotype b': { + 'serotype': 'dcs:SerotypeB' + }, + 'unknown serotype': { + 'serotype': 'dcs:UnknownSerotype' + }, + 'non-b serotype': { + 'serotype': 'dcs:NonSerotypeB' + }, + 'other serogroups': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'nontypeable': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'unknown serogroup': { + 'serogroup': 'dcs:UnknownSerogroups' + }, + 'all groups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'all serogroups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'serogroups acwy': { + 'serogroup': 'dcs:ACWYSerogroup' + }, + 'serogroup b': { + 'serogroup': 'dcs:SerogroupB' + }, + 'group a': { + 'serogroup': 'dcs:SerogroupA' + }, + 'perinatal infection': { + 'medicalCondition': 'dcs:PerinatalInfection' + }, + 'acute': { + 'medicalCondition': 'dcs:AcuteCondition' + }, + 'chronic': { + 'medicalCondition': 'dcs:ChronicCondition' + }, + 'imported': { + 'medicalStatus': 'dcs:ImportedCase' + }, + 'indigenous': { + 'medicalStatus': 'dcs:IndigenousCase' + }, + 'clinical': { + 'medicalStatus': 'dcs:ClinicalCase' + }, + 'neuroinvasive': { + 'medicalCondition': 'dcs:NeuroinvasiveDisease' + }, + 'non-neuroinvasive': { + 'medicalCondition': 'dcs:NonNeuroinvasiveDisease' + }, + 'congenital': { + 'medicalCondition': 'dcs:CongenitalDisease' + }, + 'non-congenital': { + 'medicalCondition': 'dcs:NonCongenitalDisease' + }, + 'drug resistant': { + 'medicalCondition': 'dcs:DrugResistantDisease' + }, + 'nondrug resistant': { + 'medicalCondition': 'dcs:NonDrugResistantDisease' + }, + 'invasive disease': { + 'medicalCondition': 'dcs:InvasiveDisease' + }, + 'post-diarrheal': { + 'medicalCondition': 'dcs:PostDiarrheal' + } + +} + + + + diff --git a/scripts/us_cdc/nndss_annual_tables/download_annual_data.py b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py new file mode 100644 index 0000000000..b6c9dffea7 --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py @@ -0,0 +1,132 @@ +# Copyright 2022 Google LLC +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +""" +""" +import datetime +import time +import os +import requests +import pandas as pd +from absl import flags, app +from bs4 import BeautifulSoup + +_START = 2016 +_END = 2022 #to make the last year inclusive, add +1 to last year. Here 2019 + 1 = 2020 + +_BASE_URL = "https://wonder.cdc.gov/nndss/" +_FILENAME_TEMPLATE = "mmwr_year_{year}_mmwr_table_{id}" +_BAD_URLS = [] + + +def parse_html_table(table_url: str, file_path: str) -> None: + if table_url not in _BAD_URLS: + table_content = requests.get(table_url) + t_soup = BeautifulSoup(table_content.content, 'html.parser') + try: + table_result_set = t_soup.find_all('table')[1] + + df = pd.read_html(table_result_set.prettify())[0] + # save the file in output path for each file + df.to_csv(file_path, index=False) + except IndexError: + # this case is observed from 2016 onwards + try: + table_result_set = t_soup.find_all('table')[0] + df = pd.read_html(table_result_set.prettify())[0] + # save the file in output path for each file + df.to_csv(file_path, index=False) + except IndexError: + # This case occurs when downloading https://wonder.cdc.gov/nndss/nndss_reps.asp?mmwr_year=2007&mmwr_week=13&mmwr_table=1&request=Submit + # The link is unaccessible even from the website and we need to skip this table's download + print("Link not working. Skipping table...") + pass + + +def extract_table_from_link(table_url: str, + filename: str, + output_path: str, + update: bool = False) -> None: + """ + """ + num_tries = 10 + file_path = os.path.join(output_path, f'{filename}.csv') + if not os.path.exists(file_path) or update: + print(f"Downloading {table_url}", end=" ..... ", flush=True) + try: + parse_html_table(table_url, file_path) + print("Done.", flush=True) + except: + print("Terminated with error. Please check the link.", flush=True) + while num_tries > 1: + num_tries = num_tries - 1 + parse_html_table(table_url, file_path) + print(f"Attempting download again. Tries remaining {num_tries}") + time.sleep(1) + time.sleep(2) + else: + print(f"Download from {table_url} already exists in {output_path}") + time.sleep(0.2) + + +def scrape_table_links_from_page(page_url: str, + output_path: str, + update: bool = False) -> None: + """ + """ + page = requests.get(page_url) + soup = BeautifulSoup(page.content, 'html.parser') + # get link to all tables in the page + table_link_list = [ + tag.find("a")["href"] for tag in soup.select("td:has(a)") + ] + for table_link in table_link_list: + print(table_link) + if table_link.endswith('.html') and 'table' in table_link: + # skip /nndss/ in the table_link, since it is already part of the _BASE_URL + table_url = _BASE_URL + table_link[7:] + print(table_url) + # extract year, week, table_id from link + filename_components = table_link.split('/')[-1].split( + '.html')[0].split('-') + + filename = _FILENAME_TEMPLATE.format( + year=filename_components[0], + id=filename_components[1].split('table')[1]) + extract_table_from_link(table_url, filename, output_path, update) + + +def download_annual_nnds_data_across_years(year_range: str, + output_path: str) -> None: + """ + """ + output_path = os.path.join(output_path, './nndss_annual_data_all') + if not os.path.exists(output_path): + os.makedirs(output_path) + for year in year_range: + index_url = f"https://wonder.cdc.gov/nndss/nndss_annual_tables_menu.asp?mmwr_year={year}" + print(f"Fetching data from {index_url}") + scrape_table_links_from_page(index_url, output_path, update=False) + + +def main(_) -> None: + FLAGS = flags.FLAGS + flags.DEFINE_string( + 'output_path', './data', + 'Path to the directory where generated files are to be stored.') + year_range = range(_START, _END) + download_annual_nnds_data_across_years(year_range, FLAGS.output_path) + + +if __name__ == '__main__': + app.run(main) diff --git a/scripts/us_cdc/nndss_annual_tables/place_map.py b/scripts/us_cdc/nndss_annual_tables/place_map.py new file mode 100644 index 0000000000..8771a4e039 --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/place_map.py @@ -0,0 +1,166 @@ +# Copyright 2022 Google LLC +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +"""Geo utility that maps the names of reporting areas in NNDSS to Data Commons +place nodes. +""" + +_PLACE_MAP = { + 'Ala.': 'geoId/01', + 'Alabama': 'geoId/01', + 'Alaska': 'geoId/02', + 'Amer. Samoa': 'geoId/60', + 'American Samoa': 'geoId/60', + 'Ariz.': 'geoId/04', + 'Arizona': 'geoId/04', + 'Ark.': 'geoId/05', + 'Arkansas': 'geoId/05', + 'C.N.M.I.': 'geoId/69', + 'Calif.': 'geoId/06', + 'California': 'geoId/06', + 'Colo.': 'geoId/08', + 'Colorado': 'geoId/08', + 'Commonwealth of Northern Mariana Islands': 'geoId/69', + 'Commonwealth of the Northern Mariana Islands': 'geoId/69', + 'Conn.': 'geoId/09', + 'Connecticut': 'geoId/09', + 'D.C.': 'geoId/11', + 'Del.': 'geoId/10', + 'Delaware': 'geoId/10', + 'District of Columbia': 'geoId/11', + 'E.N. CENTRAL': 'usc/EastNorthCentralDivision', + 'E.S. CENTRAL': 'usc/EastSouthCentralDivision', + 'East North Central': 'usc/EastNorthCentralDivision', + 'East South Central': 'usc/EastSouthCentralDivision', + 'Fla.': 'geoId/12', + 'Florida': 'geoId/12', + 'Ga.': 'geoId/13', + 'Georgia': 'geoId/13', + 'Guam': 'geoId/66', + 'Hawaii': 'geoId/15', + 'Idaho': 'geoId/16', + 'Ill.': 'geoId/17', + 'Illinois': 'geoId/17', + 'Ind.': 'geoId/18', + 'Indiana': 'geoId/18', + 'Iowa': 'geoId/19', + 'Kans.': 'geoId/20', + 'Kansas': 'geoId/20', + 'Kentucky': 'geoId/21', + 'Ky.': 'geoId/21', + 'La.': 'geoId/22', + 'Louisiana': 'geoId/22', + 'MID. ATLANTIC': 'usc/MiddleAtlanticDivision', + 'MOUNTAIN': 'usc/MountainDivision', + 'Maine': 'geoId/23', + 'Maryland': 'geoId/24', + 'Mass.': 'geoId/25', + 'Massachusetts': 'geoId/25', + 'Md.': 'geoId/24', + 'Mich.': 'geoId/26', + 'Michigan': 'geoId/26', + 'Middle Atlantic': 'usc/MiddleAtlanticDivision', + 'Minn.': 'geoId/27', + 'Minnesota': 'geoId/27', + 'Miss.': 'geoId/28', + 'Mississippi': 'geoId/28', + 'Missouri': 'geoId/29', + 'Mo.': 'geoId/29', + 'Mont.': 'geoId/30', + 'Montana': 'geoId/30', + 'Mountain': 'usc/MountainDivision', + 'N. Dak.': 'geoId/38', + 'N. Mex.': 'geoId/35', + 'N.C.': 'geoId/37', + 'N.H.': 'geoId/33', + 'N.J.': 'geoId/34', + #NOTE: It is unclear if Upstate NY is same as geoId/36, hence unresolved + 'N.Y. (Upstate)': '', + #NOTE: N.Y. City is not resolved to geoId/3651000 since the admin boundaries is unclear + 'N.Y. City': '', + 'NEW ENGLAND': 'usc/NewEnglandDivision', + 'Nebr.': 'geoId/31', + 'Nebraska': 'geoId/31', + 'Nev.': 'geoId/32', + 'Nevada': 'geoId/32', + 'New England': 'usc/NewEnglandDivision', + 'New Hampshire': 'geoId/33', + 'New Jersey': 'geoId/34', + 'New Mexico': 'geoId/35', + 'New York': 'geoId/36', + #NOTE: This is unresolved since there is no equivalent place within geoId/36 + 'New York (excluding New York City)': '', + #NOTE: N.Y. City is not resolved to geoId/3651000 since the admin boundaries is unclear + 'New York City': '', + 'Non-U.S. Residents': 'country/USA', + 'North Carolina': 'geoId/37', + 'North Dakota': 'geoId/38', + 'Ohio': 'geoId/39', + 'Okla.': 'geoId/40', + 'Oklahoma': 'geoId/40', + 'Oreg.': 'geoId/41', + 'Oregon': 'geoId/41', + 'P.R.': 'geoId/72', + 'PACIFIC': 'usc/PacificDivision', + 'Pa.': 'geoId/42', + 'Pacific': 'usc/PacificDivision', + 'Pennsylvania': 'geoId/42', + 'Puerto Rico': 'geoId/72', + 'R.I.': 'geoId/44', + 'Republic of Palau': 'country/PLW', + 'Republic of the Marshall Islands': 'country/MHL', + 'Rhode Island': 'geoId/44', + 'S. ATLANTIC': 'usc/SouthAtlanticDivision', + 'S. Dak.': 'geoId/46', + 'S.C.': 'geoId/45', + 'South Atlantic': 'usc/SouthAtlanticDivision', + 'South Carolina': 'geoId/45', + 'South Dakota': 'geoId/46', + 'Tenn.': 'geoId/47', + 'Tennessee': 'geoId/47', + 'Tex.': 'geoId/48', + 'Texas': 'geoId/48', + 'U.S. Residents': 'country/USA', + 'U.S. Residents, excluding U.S. Territories': 'country/USA', + 'U.S. Territories': '', + 'U.S. Virgin Islands': 'geoId/78', + 'UNITED STATES': 'country/USA', + 'US Virgin Islands': 'geoId/78', + 'United States': 'country/USA', + 'Utah': 'geoId/49', + 'V.I.': 'geoId/78', + 'Va.': 'geoId/51', + 'Vermont': 'geoId/50', + 'Virginia': 'geoId/51', + 'Vt.': 'geoId/50', + 'W. Va.': 'geoId/54', + 'W.N. CENTRAL': 'usc/WestNorthCentralDivision', + 'W.S. CENTRAL': 'usc/WestSouthCentralDivision', + 'Wash.': 'geoId/53', + 'Washington': 'geoId/53', + 'Washington DC': 'geoId/11001', + 'West North Central': 'usc/WestNorthCentralDivision', + 'West South Central': 'usc/WestSouthCentralDivision', + 'West Virginia': 'geoId/54', + 'Wis.': 'geoId/55', + 'Wisconsin': 'geoId/55', + 'Wyo.': 'geoId/56', + 'Wyoming': 'geoId/56' +} + + +def get_place_dcid(place_name: str) -> str: + """ + Utility wrapper that returns the place dcid given a name + """ + return _PLACE_MAP.get(place_name, '') diff --git a/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py new file mode 100644 index 0000000000..2b7c0adc7b --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py @@ -0,0 +1,405 @@ +# Copyright 2022 Google LLC +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +"""Change the description +This script generates the import artefacts for the prevalence of asthma in adults and children at a county-level in the United States. + +The dataset is extracted from the Interactive Maps of States and District of Columbia Visualizing Six-Level Urban-Rural Classification of +Counties and County-Equivalents with Corresponding Current Asthma Prevalence, 2016–2018 report. +""" +import re +import os +import sys +import difflib +import string +import pandas as pd +from absl import app, flags + +from config import _PV_MAP + +# Allows the following module imports to work when running as a script +_SCRIPT_PATH = os.path.dirname(os.path.abspath(__file__)) +sys.path.append(os.path.join(_SCRIPT_PATH, + '../../../util/')) # for statvar_dcid_generator + +from statvar_dcid_generator import get_statvar_dcid + +_DISEASE_DCID_DF = pd.read_csv('./data/annual_tables_disease_mapping.csv') +FLAGS = flags.FLAGS + +#TODO: Some of the functions defined here can be used while processing the annual tables and hence making the common functions as a module is preferred. + +_TEMPLATE_MCF = """Node: E:NNDSWeekly->E0 +typeOf: dcs:StatVarObservation +measurementMethod: C:NNDSWeekly->measurementMethod +observationAbout: C:NNDSWeekly->observationAbout +observationDate: C:NNDSWeekly->observationDate +variableMeasured: C:NNDSWeekly->variableMeasured +value: C:NNDSWeekly->value +observationPeriod: C:NNDSWeekly->observationPeriod +""" + + +def rename_columns(df_column_list): + for idx in range(len(df_column_list)): + if df_column_list[idx] == 'Disease;Disease': + df_column_list[idx] = 'Disease' + else: + column = df_column_list[idx] + if ';No.' in column: + df_column_list[idx] = column.replace(';No.', '') + + if 'No.;' in column: + df_column_list[idx] = column.replace('No.;', '') + + return df_column_list + + +def make_name_str(column_components, disease_match, dcid): + pv_str = [] + age_pv = '' + # collect all pvs + for component in column_components: + if component != disease_match: + if '<' not in component or '≥65 yrs' not in component: + pv_str.append(component) + elif '≥65 yrs' in component: + age_pv = f', age 65 or more years' + else: + # extract the age in years from column. Expected form is <{age} + age_num = component.split('<')[1].split(' ')[0] + age_pv = f', age {age_num} or less years' + + # Drop diseases from pv_str + pv_str = ', '.join(pv_str) + pv_str = pv_str.replace('disease', '') + + # construct the sv name + name = "\"Count of " + name = (name + pv_str + ' ') if len(pv_str) > 0 else name + name = (name + disease_match + + ' incidents ') if len(disease_match) > 0 else name + name = (name + age_pv + '\"') if len(age_pv) > 0 else (name.strip() + '\"') + + # fix the casing in serotypes + if 'Serotype b' in name: + name = name.replace('Serotype b', 'Serotype B') + + if 'Non-b' in name: + name = name.replace('Non-b', 'Non-B') + + if 'serotype' in name: + name = name.replace('serotype', 'Serotype') + + # drop all ages, all serotypes, all serogroups + name = name.replace('All serogroups', '') + name = name.replace('All serotypes', '') + name = name.replace('All ages', '') + name = name.replace('all Serotypes', '') + name = name.replace('all Serogroups', '') + name = name.replace('≥65 yrs', '65 or more years') + + # remove empty spaces + name = name.replace(' ', ' ') + name = name.replace(' , ', ', ') + name = name.rstrip() + return name + + +def map_pvs_from_column_name(row): + row['sv_dcid'] = '' + row['sv_dict'] = {} + if row['ignore_label'] == 'X': + return row + + sv_dict = {} + # initialize the base dict + sv_dict['Node'] = '' + sv_dict['populationType'] = 'dcs:MedicalConditionIncident' + sv_dict['typeOf'] = 'dcs:StatisticalVariable' + sv_dict['statType'] = 'dcs:measuredValue' + sv_dict['measuredProperty'] = 'dcs:count' + # add other pvs + column_components = row['variable'].split(';') + for component in column_components: + if component.lower() in _PV_MAP.keys(): + pv_dict = _PV_MAP[component.lower()] + for p, v in pv_dict.items(): + #if property exists, concat the value with __ + if p in sv_dict.keys(): + sv_dict[p] = sv_dict[p] + "__" + v[4:] + else: + sv_dict[p] = v + + # add the medical condition + if 'medicalCondition' in sv_dict.keys(): + sv_dict['medicalCondition'] = sv_dict['medicalCondition'] + "__" + row[ + 'dcid'] + else: + sv_dict['medicalCondition'] = 'dcs:' + row['dcid'] + + # generate the name and dcid for the sv_dict + dcid = get_statvar_dcid(sv_dict, ignore_props=['Node']) + # remove Or from the dcid + dcid = dcid.replace('Or', '_') + # remove AllSerogroups and AllSerotypes from the dcid + dcid = dcid.replace('_AllSerogroups', '') + dcid = dcid.replace('_AllSerotypes', '') + # update the Node key of the dict with the statvar dcid + sv_dict['Node'] = 'dcid:' + dcid + # generate the name for the statvar + sv_dict['name'] = make_name_str(column_components, row['name'], dcid) + + # update the dcid_pv_map + row['sv_dcid'] = 'dcs:' + dcid + row['sv_dict'] = sv_dict + return row + + +def clean_single_dataframe(df, year, table): + + # flatten multi-indexed columns + df.columns = df.columns.to_flat_index().str.join(';') + + # get columns of interest + column_list = [ + column for column in df.columns.tolist() + if ((('No.' in column) and + ('Total' not in column)) or ('Disease' in column)) + ] + df = df[column_list] + + del column_list + # fix the name of the columns + df.columns = rename_columns(df.columns.tolist()) + + # handle the empty values + df = df.fillna('') + + diseases_map = _DISEASE_DCID_DF[(_DISEASE_DCID_DF['table'] == int(table)) & + (_DISEASE_DCID_DF['year'] == int(year))] + for col in df.columns.tolist(): + diseases_map[col] = df[col].values.tolist() + del df + + diseases_map = diseases_map.melt( + id_vars=diseases_map.columns.tolist()[:7], + value_vars=diseases_map.columns.tolist()[7:], + ignore_index=True) + + # add additional columns to resolve the disease name and dcid + diseases_map = diseases_map.drop_duplicates(keep='first') + diseases_map = diseases_map[diseases_map['Replacement'] != 'NAN'] + diseases_map = diseases_map.dropna(subset=['name', 'dcid']) + print("table------",table) + print("year------",year) + if int(table) == 4 and int(year)==2021: + print("dcid--------------",diseases_map['dcid']) + diseases_map['variable'] = diseases_map['Replacement'] + ';' + diseases_map[ + 'variable'] + diseases_map = diseases_map.drop( + columns=['Disease', 'sameAs', 'table', 'Replacement']) + + # fix the value column based on the data notes mentioned in NNDSS + diseases_map = diseases_map[diseases_map['value'].str.contains('\\d', + regex=True)] + + diseases_map.rename(columns={'year': 'observationDate'}, inplace=True) + diseases_map['observationAbout'] = 'country/USA' + diseases_map['observationPeriod'] = 'P1Y' + diseases_map['measurementMethod'] = 'dcs:CDC_NNDSS_Diseases_AnnualTables' + + if table == '4': + diseases_map['ignore_label'] = diseases_map['variable'].apply( + lambda e: 'X' if 'Age <5 years' in e else '') + else: + diseases_map['ignore_label'] = '' + + sv_df = diseases_map[['variable', 'name', 'dcid']] + + diseases_map = diseases_map[[ + col for col in diseases_map.columns.tolist() + if col not in ['name', 'dcid'] + ]] + sv_df = sv_df.drop_duplicates(keep='first') + return diseases_map, sv_df + + +def process_table_4(file_list): + """ + TABLE 4. Annual reported cases of notifiable diseases and rates, by age group, United States, excluding U.S. Territories and Non-U.S. Residents + """ + table4_list = [s for s in os.listdir(file_list) if "table_4" in s] + clean_dataframe = pd.DataFrame() + full_sv_df = pd.DataFrame() + for filename in table4_list: + input_filepath = os.path.join(file_list, filename) + year = filename.split('_')[2] + + df = pd.read_csv(input_filepath, header=[0, 1]) + df, sv_df = clean_single_dataframe(df, year, '4') + + # add processed dataframe to the clean_csv + clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) + full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) + return clean_dataframe, full_sv_df + + +def process_table_5(file_list): + """ + TABLE 5. Annual reported cases of notifiable diseases and rates, by sex, United States, excluding U.S. Territories and Non-U.S. Residents + """ + table5_list = [s for s in os.listdir(file_list) if "table_5" in s] + clean_dataframe = pd.DataFrame() + full_sv_df = pd.DataFrame() + for filename in table5_list: + input_filepath = os.path.join(file_list, filename) + year = filename.split('_')[2] + + df = pd.read_csv(input_filepath, header=[0, 1]) + df, sv_df = clean_single_dataframe(df, year, '5') + + # add processed dataframe to the clean_csv + clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) + full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) + return clean_dataframe, full_sv_df + + +def process_table_6(file_list): + """ + TABLE 6. Annual reported cases of notifiable diseases and rates, by race*,†, United States, excluding U.S. Territories and Non-U.S. Residents + """ + table6_list = [s for s in os.listdir(file_list) if "table_6" in s] + clean_dataframe = pd.DataFrame() + full_sv_df = pd.DataFrame() + for filename in table6_list: + input_filepath = os.path.join(file_list, filename) + year = filename.split('_')[2] + + df = pd.read_csv(input_filepath, header=[0, 1]) + df, sv_df = clean_single_dataframe(df, year, '6') + + # add processed dataframe to the clean_csv + clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) + full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) + return clean_dataframe, full_sv_df + + +def process_table_7(file_list): + """ + TABLE 7. Annual reported cases of notifiable diseases and rates, by ethnicity*, United States, excluding U.S. Territories and Non-U.S. Residents + """ + table7_list = [s for s in os.listdir(file_list) if "table_7" in s] + clean_dataframe = pd.DataFrame() + full_sv_df = pd.DataFrame() + for filename in table7_list: + input_filepath = os.path.join(file_list, filename) + year = filename.split('_')[2] + + df = pd.read_csv(input_filepath, header=[0, 1]) + df, sv_df = clean_single_dataframe(df, year, '7') + # add processed dataframe to the clean_csv + clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) + # if() + clean_dataframe.to_csv("./rough_csv/clean df.csv",index=False) + full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) + return clean_dataframe, full_sv_df + + +def generate_statvars(full_sv_df): + full_sv_df = full_sv_df.apply(map_pvs_from_column_name, + axis=1, + result_type='expand') + return full_sv_df + + +def write_svdicts_to_file(dict_list, file_path): + unique_dict = [dict(tup) for tup in {tuple(d.items()) for d in dict_list}] + f = open(file_path, "w") + for udict in unique_dict: + for p, v in udict.items(): + if v == 'dcs:AllSerotypes' or v == 'dcs:AllSerogroups': + f.write('#' + p + ": " + v + "\n") + else: + f.write(p + ": " + v + "\n") + f.write('\n') + f.close() + + +def main(_) -> None: + flags.DEFINE_string( + 'input_path', './data/nndss_annual_data_all', + 'Path to the directory with weekly data scrapped from NNDSS') + flags.DEFINE_string( + 'output_path', './data/output', + 'Path to the directory where generated files are to be stored.') + + file_list = FLAGS.input_path + output_path = FLAGS.output_path + + # process each table and clean the dataset + sv4, tab4 = process_table_4(file_list) + sv5, tab5 = process_table_5(file_list) + sv6, tab6 = process_table_6(file_list) + sv7, tab7 = process_table_7(file_list) + + # make a single dataframe of cleaned data and statvar pvs + cleaned_dataframe = pd.concat([tab4, tab5, tab6, tab7], ignore_index=True) + full_sv_df = pd.concat([sv4, sv5, sv6, sv7], ignore_index=True) + full_sv_df = full_sv_df.drop_duplicates(keep='first') + del tab4, tab5, tab6, tab7, sv4, sv5, sv6, sv7 + # associate the disease name and dcid to clean_dataframe + cleaned_dataframe = pd.merge(cleaned_dataframe, + full_sv_df, + on='variable', + how='left') + del full_sv_df + # statvar dataframe with all constraints + full_sv_df = cleaned_dataframe[['ignore_label', 'variable', 'name', 'dcid']] + full_sv_df = full_sv_df.drop_duplicates(keep='first') + # generate statvars from full_sv_df + full_sv_df = generate_statvars(full_sv_df) + # merge statvar dcid with full df + cleaned_dataframe = pd.merge( + cleaned_dataframe, + full_sv_df, + on=['ignore_label', 'variable', 'name', 'dcid'], + how='left') + # filter rows that have a defined statvar dcid + cleaned_dataframe = cleaned_dataframe[cleaned_dataframe['sv_dcid'] != ''] + obs_df = cleaned_dataframe[[ + 'observationAbout', 'observationDate', 'sv_dcid', 'measurementMethod', + 'value', 'observationPeriod', 'variable' + ]] + obs_df.rename(columns={'sv_dcid': 'variableMeasured'}, inplace=True) + # setup the output directory + if not os.path.exists(output_path): + os.makedirs(output_path) + + file_prefix = 'cdc_nndss_annual_by_demographics' + # write statvar_dct to mcf file + sv_dict_list = cleaned_dataframe['sv_dict'].values.tolist() + mcf_file_path = os.path.join(output_path, f'{file_prefix}.mcf') + write_svdicts_to_file(sv_dict_list, mcf_file_path) + + # write outputs to file + f = open(os.path.join(output_path, f'{file_prefix}.tmcf'), 'w') + f.write(_TEMPLATE_MCF) + f.close() + + # TODO: Write to csv + tmcf + sv mcf (can be global) + obs_df.to_csv(os.path.join(output_path, f'{file_prefix}.csv'), index=False) + + +if __name__ == '__main__': + app.run(main) diff --git a/scripts/us_cdc/nndss_annual_tables/process_annual_reporting.py b/scripts/us_cdc/nndss_annual_tables/process_annual_reporting.py new file mode 100644 index 0000000000..98ac0bb087 --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/process_annual_reporting.py @@ -0,0 +1,529 @@ +# Copyright 2022 Google LLC +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +""" +This script generates the clean csv, template and stat-var mcf files for the +NNDSS Annual tables based on Reporting Area +""" +import numpy as np +import os +import sys +import csv +import difflib +import re +import string +import datetime +import pandas as pd +from absl import app, flags +from config import _PV_MAP +# Allows the following module imports to work when running as a script +_SCRIPT_PATH = os.path.dirname(os.path.abspath(__file__)) + +from place_map import get_place_dcid + +sys.path.append(os.path.join(_SCRIPT_PATH, + '../../../util/')) # for statvar_dcid_generator + +from statvar_dcid_generator import get_statvar_dcid + +FLAGS = flags.FLAGS +flags.DEFINE_string( + 'weekly_nndss_input', './data/nndss_annual_data_all', + 'Path to the directory with weekly data scrapped from NNDSS') +flags.DEFINE_string( + 'weekly_nndss_output', './data/output', + 'Path to the directory where generated files are to be stored.') + +_PREFIX = 'cdc_nndss_annual_by_reporting_area_tables' + +_TEMPLATE_MCF = """Node: E:NNDSWeekly->E0 +typeOf: dcs:StatVarObservation +measurementMethod: C:NNDSWeekly->measurementMethod +observationAbout: C:NNDSWeekly->observationAbout +observationDate: C:NNDSWeekly->observationDate +variableMeasured: C:NNDSWeekly->variableMeasured +value: C:NNDSWeekly->value +observationPeriod: C:NNDSWeekly->observationPeriod +""" + +#NOTE: At the moment, we are ignoring the non-integer value of reported disease incidents. +_FORMAT_UNREPORTED_CASES = { + '-': '', + 'U': '', + 'N': '', + 'NN': '', + 'NP': '', + 'NC': '', + 'P': '', + '\*\*': '' +} + +#NOTE: A map for different +_PV_MAP = { + 'confirmed': { + 'medicalStatus': 'dcs:ConfirmedCase' + }, + 'probable': { + 'medicalStatus': 'dcs:ProbableCase' + }, + 'pediatric mortality': { + 'medicalStatus': 'dcs:PediatricMortality' + }, + 'deaths': { + 'medicalStatus': 'dcs:PatientDeceased' + }, + 'age <5': { + 'age': '[- 5 Years]' + }, + 'age < 5': { + 'age': '[- 5 Years]' + }, + 'age <5 years': { + 'age': '[- 5 Years]' + }, + 'age < 5 years': { + 'age': '[- 5 Years]' + }, + 'all serotypes': { + 'serotype': 'dcs:AllSerotypes' + }, + 'serotype b': { + 'serotype': 'dcs:SerotypeB' + }, + 'unknown serotype': { + 'serotype': 'dcs:UnknownSerotype' + }, + 'non-b serotype': { + 'serotype': 'dcs:NonSerotypeB' + }, + 'other serogroups': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'nontypeable': { + 'serogroup': 'dcs:OtherSerogroups' + }, + 'unknown serogroup': { + 'serogroup': 'dcs:UnknownSerogroups' + }, + 'all groups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'all serogroups': { + 'serogroup': 'dcs:AllSerogroups' + }, + 'serogroups acwy': { + 'serogroup': 'dcs:ACWYSerogroup' + }, + 'serogroup b': { + 'serogroup': 'dcs:SerogroupB' + }, + 'group a': { + 'serogroup': 'dcs:SerogroupA' + }, + 'perinatal infection': { + 'medicalCondition': 'dcs:PerinatalInfection' + }, + 'acute': { + 'medicalCondition': 'dcs:AcuteCondition' + }, + 'chronic': { + 'medicalCondition': 'dcs:ChronicCondition' + }, + 'imported': { + 'medicalStatus': 'dcs:ImportedCase' + }, + 'indigenous': { + 'medicalStatus': 'dcs:IndigenousCase' + }, + 'clinical': { + 'medicalStatus': 'dcs:ClinicalCase' + }, + 'neuroinvasive': { + 'medicalCondition': 'dcs:NeuroinvasiveDisease' + }, + 'non-neuroinvasive': { + 'medicalCondition': 'dcs:NonNeuroinvasiveDisease' + }, + 'congenital': { + 'medicalCondition': 'dcs:CongenitalDisease' + }, + 'non-congenital': { + 'medicalCondition': 'dcs:NonCongenitalDisease' + }, + 'drug resistant': { + 'medicalCondition': 'dcs:DrugResistantDisease' + }, + 'nondrug resistant': { + 'medicalCondition': 'dcs:NonDrugResistantDisease' + }, + 'invasive disease': { + 'medicalCondition': 'dcs:InvasiveDisease' + }, + 'post-diarrheal': { + 'medicalCondition': 'dcs:PostDiarrheal' + } +} + +#TODO: Resolve path based on the script path for tests +#TODO: Wrap this within the main function + +_DISEASE_DCID_DF = pd.read_csv("./data/annual_tables_counts.csv") +print(_DISEASE_DCID_DF.head) +_DISEASE_DCID_DF = _DISEASE_DCID_DF[_DISEASE_DCID_DF['replacement'] != 'NAN'] + +# def resolve_reporting_places_to_dcids(place, _PLACE_DCID_DF): +# try: +# # remove non printable special characters from column name +# place = ''.join(filter(lambda x: x in string.printable, place)) +# place = place.strip() +# print(_PLACE_DCID_DF.loc[(_PLACE_DCID_DF['Place Name'] == place), +# 'Resolved place dcid']) +# return _PLACE_DCID_DF.loc[(_PLACE_DCID_DF['Place Name'] == place), +# 'Resolved place dcid'].values[0] +# except: +# # return empty string when no matches are found. +# return '' + + +def format_column_header(column_list): + # for all other columns update using _DISEASE_DCID_DF + rename_map = {} + + # for some datasets the first column is poorly formatted + rename_map[column_list[0]] = 'Reporting Area' + + for col in column_list[1:]: + try: + match = difflib.get_close_matches( + col, _DISEASE_DCID_DF['original'].astype(str), cutoff=0.9)[0] + rename_map[col] = _DISEASE_DCID_DF.loc[ + _DISEASE_DCID_DF['original'] == match, 'replacement'].values[0] + except IndexError: + # Occurs for three columns which describe the species of the bacteria which is not captured in a statvar at the moment. + continue + return rename_map + + +def concat_rows_with_column_headers(rows_with_col_names, df_column_list): + # some rows have NaN as the first element, we replace it with '' + rows_with_col_names = rows_with_col_names.fillna('') + + # works with table structure where column=0 is always the 'Reporting Area' and the the other columns are the case counts with different aggregations + rows_with_col_names = rows_with_col_names.groupby( + df_column_list[0])[df_column_list[1:]].agg( + lambda d: ';'.join(d.drop_duplicates())).reset_index() + + ## some csvs do not have data and need will throw an exception when column names are flattened. + try: + ## flatten column names to list + column_list = rows_with_col_names.loc[0, :].values.flatten().tolist() + ## remove non-printable + return column_list + except: + # Dataframe does not have any data points and is pobably a note. + return [] + + +def process_nndss_current_weekly(input_filepath: str): + ## from the csv files get the year, and week count + filename = input_filepath.split('/')[-1] + year = int(filename[10:14]) + + df = pd.read_csv(input_filepath, header=None) + + ## fix the column names of the file - the head of the dataframe has all the rows that have the column name + rows_with_col_names = df[(df[0] == 'Reporting Area') | + (df[0] == 'Reporting Area') | + (df[0] == 'Reporting area') | + (df[0] == 'Reporting area')] + column_list = concat_rows_with_column_headers(rows_with_col_names, + df.columns.tolist()) + # remove rows starting with 'Notes' or 'Total' or 'Notice' + if df.shape[0] > 5: + # some csv files have column indices as the first row, which need to be removed + if df[0][0] == '0': + df = df.drop([0], errors='ignore') + + # remove rows that had column names + df = df[~df.isin(rows_with_col_names)].dropna() + del rows_with_col_names + # replace double spaces with a single space + column_list = [c.replace(' ', ' ') for c in column_list] + # update columns of the dataframe + df.columns = column_list + + # format column names + rename_map = format_column_header(column_list) + df.rename(columns=rename_map, inplace=True) + + # select columns of interest i.e. current week statistics + selected_cols = list(rename_map.values()) + + # filter the dataframe to current week stat columns + df = df[selected_cols] + + # un-pivot the dataframe to place, column, value + df = df.melt(id_vars=['Reporting Area'], + value_vars=selected_cols, + var_name='variable', + value_name='value') + + # add the observation date to the dataframe + df['observationDate'] = year + + # add the observation period based on the column names + df['observationPeriod'] = 'P1Y' + # convert the place names to geoIds + df['observationAbout'] = df['Reporting Area'].apply( + lambda x: get_place_dcid(x)) + + # fix the value column based on the data notes mentioned in NNDSS + df = df[df['value'].str.contains('\\d', regex=True)] + return df + + +def make_name_str(column_components, dcid): + pv_str = [] + resident_status = '' + age_pv = '' + # collect all pvs + for component in column_components: + if '<' not in component: + pv_str.append(component) + else: + # extract the age in years from column. Expected form is <{age} + age_num = component.split('<')[1].split(' ')[0] + age_pv = f', age {age_num} or less years' + + # Drop diseases from pv_str + pv_str = ', '.join(pv_str) + pv_str = pv_str.replace('disease', '') + + # construct the sv name + name = "\"Count of " + name = (name + pv_str + ' ') if len(pv_str) > 0 else name + name = (name + 'incidents ') #if len(disease_match) > 0 else name + name = (name + resident_status + ' ') if len(resident_status) > 0 else name + name = (name + age_pv + '\"') if len(age_pv) > 0 else (name.strip() + '\"') + # fix the casing in serotypes + if 'Serotype b' in name: + name = name.replace('Serotype b', 'Serotype B') + + if 'Non-b' in name: + name = name.replace('Non-b', 'Non-B') + + if 'serotype' in name: + name = name.replace('serotype', 'Serotype') + + # remove empty spaces + name = name.replace(' ', ' ') + name = name.replace(' , ', ', ') + name = name.rstrip() + return name + + +def generate_statvar_map_for_columns(column_list, place_list): + + sv_map = {} + dcid_df = pd.DataFrame( + columns=['Reporting Area', 'variable', 'variableMeasured']) + for column in column_list: + # initialize the statvar dict for the current column + svdict = {} + svdict['populationType'] = 'dcs:MedicalConditionIncident' + svdict['typeOf'] = 'dcs:StatisticalVariable' + svdict['statType'] = 'dcs:measuredValue' + svdict['measuredProperty'] = 'dcs:count' + + # map to disease + mapped_disease = _DISEASE_DCID_DF.loc[_DISEASE_DCID_DF['replacement'] == + column, :] + mapped_disease = mapped_disease.drop_duplicates(keep='first') + + # column names have multiple pvs which are joined with ';' + column_components = column.split(';') + + # add pvs that are dependent on the place + patterns_for_resident_pvs = { + 'U.S. Residents, excluding U.S. Territories': 'dcs:USResident', + 'US Residents': 'dcs:USResident', + 'Non-U.S. Residents': 'dcs:NonUSResident' + } + + # when we have the best match i.e, only one row + if mapped_disease.shape[0] >= 1: + incidentType = 'dcs:' + str(mapped_disease['dcid'].values[0]) + disease = str(mapped_disease['diseases'].values[0]) + disease = '_'.join([e.title() for e in disease.split()]) + disease = disease.replace(',', '_') + svdict['medicalCondition'] = incidentType + + # we need to add other non-disease pvs to the statvar + for component in column_components: + if 'Current' not in component: + if component.lower() in _PV_MAP.keys(): + pv_dict = _PV_MAP[component.lower()] + # if property exists, append the value to existing property, separated by a comma + for p, v in pv_dict.items(): + if p in svdict.keys(): + svdict[p] = svdict[p] + "__" + v[4:] + else: + svdict[p] = v + + # check if residentStatus property is applicable + resident_status = '' + for place in place_list: + resident_status_place = [ + substr for substr in list(patterns_for_resident_pvs.keys()) + if substr in place + ] + + if len(resident_status_place) > 0: + resident_status = patterns_for_resident_pvs[ + resident_status_place[0]] + + # add residentStatus pv to the svdict + if resident_status: + # add residentStatus pv to dict + svdict_tmp = svdict.copy() + svdict_tmp['residentStatus'] = resident_status + # get name and dcid + dcid = get_statvar_dcid(svdict_tmp) + # remove logical OR from dcid + dcid = dcid.replace('Or', '_') + # remove AllSerotypes and AllSerogroups from dcid + dcid = dcid.replace('_AllSerogroups', '') + dcid = dcid.replace('_AllSerotypes', '') + + svdict_tmp['name'] = make_name_str(column_components, dcid) + # add to column_map + key = 'Node: dcid:' + dcid + if key not in sv_map.keys(): + sv_map[key] = svdict_tmp + dcid_df = dcid_df._append( + { + 'Reporting Area': place, + 'variable': column, + 'variableMeasured': dcid + }, + ignore_index=True) + + else: + # get name and dcid + svdict_tmp = svdict.copy() + dcid = get_statvar_dcid(svdict_tmp) + # remove the logical Or from dcid + dcid = dcid.replace('Or', '_') + # remove AllSerotypes and AllSerogroups from dcid + dcid = dcid.replace('_AllSerogroups', '') + dcid = dcid.replace('_AllSerotypes', '') + + svdict_tmp['name'] = make_name_str(column_components, dcid) + # add to column_map + key = 'Node: dcid:' + dcid + if key not in sv_map.keys(): + sv_map[key] = svdict_tmp + # print("type-----------",type(dcid_df)) + dcid_df = dcid_df._append( + { + 'Reporting Area': place, + 'variable': column, + 'variableMeasured': dcid + }, + ignore_index=True) + + return sv_map, dcid_df + + +def generate_processed_csv(input_path): + processed_dataframe_list = [] + #TODO: Parallelize this step + # for all files in the data directory process the files and append to a common dataframe + file_list = [f for f in sorted(os.listdir(input_path)) if 'table_2' in f] + for filename in file_list: + file_inputpath = os.path.join(input_path, filename) + df = process_nndss_current_weekly(file_inputpath) + processed_dataframe_list.append(df) + + # concat list of all processed data frames + cleaned_dataframe = pd.concat(processed_dataframe_list, ignore_index=False) + del processed_dataframe_list + + # set measurement method + cleaned_dataframe[ + 'measurementMethod'] = 'dcs:CDC_NNDSS_Diseases_AnnualTables' + + cleaned_dataframe['observationAbout'].replace('', np.nan, inplace=True) + cleaned_dataframe['value'].replace('', np.nan, inplace=True) + cleaned_dataframe.dropna(subset=['value', 'observationAbout'], inplace=True) + + cleaned_dataframe['value'] = cleaned_dataframe['value'].str.replace(',', '') + cleaned_dataframe['value'] = cleaned_dataframe['value'].astype(float) + + return cleaned_dataframe + + +def main(_) -> None: + input_path = FLAGS.weekly_nndss_input + output_path = FLAGS.weekly_nndss_output + + cleaned_dataframe = generate_processed_csv(input_path) + + # for each unique column generate the statvar with constraints + unique_columns = cleaned_dataframe['variable'].unique().tolist() + unique_places = cleaned_dataframe['Reporting Area'].unique().tolist() + + # column - statvar dictionary map + sv_map, dcid_df = generate_statvar_map_for_columns(unique_columns, + unique_places) + + # map the statvars to column names + cleaned_dataframe = pd.merge(cleaned_dataframe, + dcid_df, + on=['Reporting Area', 'variable'], + how='left') + + #TODO: 2. If reporting area is US Territories, drop observation and make a sum of case counts across US States with mMethod = dc/Aggregate + + ## Create output directory if not present + if not os.path.exists(output_path): + os.makedirs(output_path) + # write outputs to file + f = open(os.path.join(output_path, f'{_PREFIX}.tmcf'), 'w') + f.write(_TEMPLATE_MCF) + f.close() + + # write statvar mcf file from col_map + f = open(os.path.join(output_path, f'{_PREFIX}.mcf'), 'w') + + for dcid, pvdict in sv_map.items(): + f.write(dcid + '\n') + for p, v in pvdict.items(): + if v == 'dcs:AllSerotypes' or v == 'dcs:AllSerogroups': + f.write('#' + p + ": " + v + "\n") + else: + f.write(p + ": " + v + "\n") + f.write("\n") + f.close() + + # write csv + cleaned_dataframe = cleaned_dataframe[[ + 'observationAbout', 'observationDate', 'variableMeasured', + 'measurementMethod', 'value', 'observationPeriod', 'variable' + ]] + cleaned_dataframe.to_csv(os.path.join(output_path, f'{_PREFIX}.csv'), + index=False) + + +if __name__ == '__main__': + app.run(main) From b4045455848c1b02f00c8d37f464dc0e97e1daaa Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Wed, 30 Oct 2024 09:06:45 +0000 Subject: [PATCH 2/7] script modification of nndss --- scripts/us_cdc/nndss_annual_tables/config.py | 5 ----- .../process_annual_demographics.py | 16 ++++++++-------- 2 files changed, 8 insertions(+), 13 deletions(-) diff --git a/scripts/us_cdc/nndss_annual_tables/config.py b/scripts/us_cdc/nndss_annual_tables/config.py index 50586b03b6..fde9577828 100644 --- a/scripts/us_cdc/nndss_annual_tables/config.py +++ b/scripts/us_cdc/nndss_annual_tables/config.py @@ -272,9 +272,4 @@ 'post-diarrheal': { 'medicalCondition': 'dcs:PostDiarrheal' } - } - - - - diff --git a/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py index 2b7c0adc7b..ff4bfe8a26 100644 --- a/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py +++ b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py @@ -201,10 +201,10 @@ def clean_single_dataframe(df, year, table): diseases_map = diseases_map.drop_duplicates(keep='first') diseases_map = diseases_map[diseases_map['Replacement'] != 'NAN'] diseases_map = diseases_map.dropna(subset=['name', 'dcid']) - print("table------",table) - print("year------",year) - if int(table) == 4 and int(year)==2021: - print("dcid--------------",diseases_map['dcid']) + print("table------", table) + print("year------", year) + if int(table) == 4 and int(year) == 2021: + print("dcid--------------", diseases_map['dcid']) diseases_map['variable'] = diseases_map['Replacement'] + ';' + diseases_map[ 'variable'] diseases_map = diseases_map.drop( @@ -268,7 +268,7 @@ def process_table_5(file_list): df = pd.read_csv(input_filepath, header=[0, 1]) df, sv_df = clean_single_dataframe(df, year, '5') - + # add processed dataframe to the clean_csv clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) @@ -288,7 +288,7 @@ def process_table_6(file_list): df = pd.read_csv(input_filepath, header=[0, 1]) df, sv_df = clean_single_dataframe(df, year, '6') - + # add processed dataframe to the clean_csv clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) @@ -311,7 +311,7 @@ def process_table_7(file_list): # add processed dataframe to the clean_csv clean_dataframe = pd.concat([clean_dataframe, df], ignore_index=True) # if() - clean_dataframe.to_csv("./rough_csv/clean df.csv",index=False) + clean_dataframe.to_csv("./rough_csv/clean df.csv", index=False) full_sv_df = pd.concat([full_sv_df, sv_df], ignore_index=True) return clean_dataframe, full_sv_df @@ -352,7 +352,7 @@ def main(_) -> None: sv5, tab5 = process_table_5(file_list) sv6, tab6 = process_table_6(file_list) sv7, tab7 = process_table_7(file_list) - + # make a single dataframe of cleaned data and statvar pvs cleaned_dataframe = pd.concat([tab4, tab5, tab6, tab7], ignore_index=True) full_sv_df = pd.concat([sv4, sv5, sv6, sv7], ignore_index=True) From 32e8401135ba1c38565a97d5d782126db7db5ce2 Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Mon, 4 Nov 2024 06:19:01 +0000 Subject: [PATCH 3/7] script modification of nndss --- .../annual_tables_disease_mapping.csv | 3974 +++++++++++++++++ 1 file changed, 3974 insertions(+) create mode 100644 scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv diff --git a/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv new file mode 100644 index 0000000000..3476b1839b --- /dev/null +++ b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv @@ -0,0 +1,3974 @@ +year,table,Disease,Replacement,name,dcid,sameAs +2017,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2017,5,Arboviral diseases,NAN,NAN,NAN,NAN +2017,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2017,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,5,Powassan virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,5,West Nile virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,5,Babesiosis,NAN,NAN,NAN,NAN +2017,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2017,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2017,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2017,5,Botulism,NAN,NAN,NAN,NAN +2017,5,Total,Botulism,Botulism,Botulism, +2017,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2017,5,Infant *,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2017,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2017,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2017,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2017,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2017,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2017,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2017,5,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2017,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2017,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2017,5,Dengue virus infections §,NAN,NAN,NAN,NAN +2017,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2017,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2017,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2017,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2017,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2017,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2017,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2017,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2017,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2017,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2017,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2017,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2017,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2017,5,Age <5 years ¶,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2017,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2017,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2017,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, 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coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2017,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2017,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2017,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2017,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2017,5,Syphilis,NAN,NAN,NAN,NAN +2017,5,"Total, all stages",Syphilis,Syphilis,Syphilis, +2017,5,Congenital *,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2017,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2017,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2017,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2017,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2017,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2017,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2017,5,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2017,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2017,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2017,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2017,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2017,5,Vibriosis,NAN,NAN,NAN,NAN +2017,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2017,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2017,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2017,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2017,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2017,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2017,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2017,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2017,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2017,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2017,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2017,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2017,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2017,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2017,5,Zika virus,NAN,NAN,NAN,NAN +2017,5,"Zika virus disease, congenital *,†††",NAN,NAN,NAN,NAN +2017,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2017,5,"Zika virus infection, congenital *,†††",NAN,NAN,NAN,NAN +2017,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2017,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2017,7,Arboviral diseases,NAN,NAN,NAN,NAN +2017,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2017,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,7,Powassan virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,7,West Nile virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,7,Babesiosis,NAN,NAN,NAN,NAN +2017,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2017,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2017,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2017,7,Botulism,NAN,NAN,NAN,NAN +2017,7,Total,Botulism,Botulism,Botulism, +2017,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2017,7,Infant †,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2017,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2017,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2017,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2017,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2017,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2017,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2017,7,Coccidioidomycosis §,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2017,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2017,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2017,7,Dengue virus infections ¶,NAN,NAN,NAN,NAN +2017,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2017,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2017,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2017,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2017,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2017,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2017,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2017,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2017,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2017,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2017,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2017,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2017,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Age <5 years **,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2017,7,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2017,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2017,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2017,7,Hepatitis ††,NAN,NAN,NAN,NAN +2017,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2017,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,7,"B, perinatal infection §§",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,7,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,7,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2017,7,Influenza-associated pediatric mortality ¶¶,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2017,7,Invasive pneumococcal disease ***,NAN,NAN,NAN,NAN +2017,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Age <5 years **,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,7,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2017,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2017,7,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2017,7,Lyme disease,NAN,NAN,NAN,NAN +2017,7,Total,Lyme disease,Lyme disease,LymeDisease, +2017,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2017,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2017,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2017,7,Measles,NAN,NAN,NAN,NAN +2017,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2017,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2017,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2017,7,Meningococcal disease,NAN,NAN,NAN,NAN +2017,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2017,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2017,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2017,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2017,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2017,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2017,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2017,7,Q fever,NAN,NAN,NAN,NAN +2017,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2017,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2017,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2017,7,Rabies,NAN,NAN,NAN,NAN +2017,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2017,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2017,7,"Rubella, congenital syndrome †",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2017,7,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2017,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2017,7,Shiga toxin-producing Escherichia coli †††,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2017,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2017,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2017,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2017,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2017,7,Syphilis,NAN,NAN,NAN,NAN +2017,7,"Total, all stages",Syphilis,Syphilis,Syphilis, +2017,7,Congenital †,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2017,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2017,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2017,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2017,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2017,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2017,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2017,7,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2017,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2017,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2017,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2017,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2017,7,Vibriosis,NAN,NAN,NAN,NAN +2017,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2017,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2017,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2017,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2017,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2017,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2017,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2017,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2017,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2017,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2017,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2017,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2017,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2017,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2017,7,Zika virus,NAN,NAN,NAN,NAN +2017,7,"Zika virus disease, congenital †,§§§",NAN,NAN,NAN,NAN +2017,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2017,7,"Zika virus infection, congenital †,§§§",NAN,NAN,NAN,NAN +2017,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2017,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2017,4,Arboviral diseases,NAN,NAN,NAN,NAN +2017,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2017,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,4,Powassan virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,4,West Nile virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,4,Babesiosis,NAN,NAN,NAN,NAN +2017,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2017,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2017,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2017,4,Botulism,NAN,NAN,NAN,NAN +2017,4,Total,Botulism,Botulism,Botulism, +2017,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2017,4,Infant *,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2017,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2017,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2017,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2017,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2017,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2017,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2017,4,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2017,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2017,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2017,4,Dengue virus infections §,NAN,NAN,NAN,NAN +2017,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2017,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2017,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2017,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2017,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2017,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2017,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2017,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2017,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2017,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2017,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2017,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2017,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Age <5 years ¶,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2017,4,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2017,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2017,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2017,4,Hepatitis **,NAN,NAN,NAN,NAN +2017,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2017,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,4,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,4,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,4,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2017,4,Influenza-associated pediatric mortality §§,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2017,4,Invasive pneumococcal disease ¶¶,NAN,NAN,NAN,NAN +2017,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Age <5 years ¶,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,4,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2017,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2017,4,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2017,4,Lyme disease,NAN,NAN,NAN,NAN +2017,4,Total,Lyme disease,Lyme disease,LymeDisease, +2017,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2017,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2017,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2017,4,Measles,NAN,NAN,NAN,NAN +2017,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2017,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2017,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2017,4,Meningococcal disease,NAN,NAN,NAN,NAN +2017,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2017,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2017,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2017,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2017,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2017,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2017,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2017,4,Q fever,NAN,NAN,NAN,NAN +2017,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2017,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2017,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2017,4,Rabies,NAN,NAN,NAN,NAN +2017,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2017,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2017,4,"Rubella, congenital syndrome *",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2017,4,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2017,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2017,4,Shiga toxin-producing Escherichia coli ***,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2017,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2017,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2017,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2017,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2017,4,Syphilis,NAN,NAN,NAN,NAN +2017,4,"Total, all stages",Syphilis,Syphilis,Syphilis, +2017,4,Congenital *,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2017,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2017,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2017,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2017,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2017,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2017,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2017,4,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2017,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2017,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2017,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2017,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2017,4,Vibriosis,NAN,NAN,NAN,NAN +2017,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2017,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2017,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2017,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2017,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2017,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2017,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2017,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2017,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2017,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2017,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2017,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2017,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2017,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2017,4,Zika virus,NAN,NAN,NAN,NAN +2017,4,"Zika virus disease, congenital *,†††",NAN,NAN,NAN,NAN +2017,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2017,4,"Zika virus infection, congenital *,†††",NAN,NAN,NAN,NAN +2017,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2016,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2016,5,Arboviral diseases,NAN,NAN,NAN,NAN +2016,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2016,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,5,Powassan virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,5,West Nile virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,5,Babesiosis,NAN,NAN,NAN,NAN +2016,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2016,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2016,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2016,5,Botulism,NAN,NAN,NAN,NAN +2016,5,Total,Botulism,Botulism,Botulism, +2016,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2016,5,Infant *,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2016,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2016,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2016,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2016,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2016,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2016,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2016,5,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2016,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2016,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2016,5,Dengue virus infections §,NAN,NAN,NAN,NAN +2016,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2016,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2016,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2016,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2016,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2016,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2016,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2016,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2016,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2016,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2016,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2016,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2016,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Age <5 years ¶,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,5,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2016,5,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2016,5,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2016,5,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2016,5,Hepatitis **,NAN,NAN,NAN,NAN +2016,5,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2016,5,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,5,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,5,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2016,5,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2016,5,Influenza-associated pediatric mortality §§,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2016,5,Invasive pneumococcal disease,NAN,NAN,NAN,NAN +2016,5,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Age <5 years ¶,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,5,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2016,5,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2016,5,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2016,5,Lyme disease,NAN,NAN,NAN,NAN +2016,5,Total,Lyme disease,Lyme disease,LymeDisease, +2016,5,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2016,5,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2016,5,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2016,5,Measles,NAN,NAN,NAN,NAN +2016,5,Total,Measles,Measles,Measles,bio/DOID_8622 +2016,5,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2016,5,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2016,5,Meningococcal disease,NAN,NAN,NAN,NAN +2016,5,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,5,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,5,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,5,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,5,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,5,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2016,5,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2016,5,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2016,5,Plague,Plague,Plague,Plague,bio/DOID_3482 +2016,5,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2016,5,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2016,5,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2016,5,Q fever,NAN,NAN,NAN,NAN +2016,5,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2016,5,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2016,5,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2016,5,Rabies,NAN,NAN,NAN,NAN +2016,5,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2016,5,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2016,5,"Rubella, congenital syndrome *",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2016,5,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2016,5,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2016,5,Shiga toxin-producing Escherichia coli ¶¶,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2016,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2016,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2016,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2016,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2016,5,Syphilis,NAN,NAN,NAN,NAN +2016,5,"Total, all stages ***",Syphilis,Syphilis,Syphilis, +2016,5,Congenital *,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2016,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2016,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2016,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2016,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2016,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2016,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2016,5,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2016,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2016,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2016,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2016,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2016,5,Vibriosis,NAN,NAN,NAN,NAN +2016,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2016,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2016,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2016,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2016,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2016,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2016,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2016,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2016,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2016,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2016,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2016,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2016,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2016,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2016,5,Zika virus,NAN,NAN,NAN,NAN +2016,5,"Zika virus disease, congenital *,†††",NAN,NAN,NAN,NAN +2016,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2016,5,"Zika virus infection, congenital *,†††",NAN,NAN,NAN,NAN +2016,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2018,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2018,7,Arboviral diseases,NAN,NAN,NAN,NAN +2018,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2018,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,7,Powassan virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,7,West Nile virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,7,Babesiosis,NAN,NAN,NAN,NAN +2018,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2018,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2018,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2018,7,Botulism,NAN,NAN,NAN,NAN +2018,7,Total,Botulism,Botulism,Botulism, +2018,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2018,7,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2018,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2018,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2018,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2018,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2018,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2018,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2018,7,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2018,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2018,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2018,7,Dengue virus infections §,NAN,NAN,NAN,NAN +2018,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2018,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2018,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2018,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2018,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2018,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2018,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2018,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2018,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2018,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2018,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2018,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2018,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2018,7,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2018,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2018,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2018,7,Hepatitis ¶,NAN,NAN,NAN,NAN +2018,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2018,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,7,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,7,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,7,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,7,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2018,7,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2018,7,Invasive pneumococcal disease **,NAN,NAN,NAN,NAN +2018,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,7,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2018,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2018,7,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2018,7,Lyme disease,NAN,NAN,NAN,NAN +2018,7,Total,Lyme disease,Lyme disease,LymeDisease, +2018,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2018,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2018,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2018,7,Measles,NAN,NAN,NAN,NAN +2018,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2018,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2018,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2018,7,Meningococcal disease,NAN,NAN,NAN,NAN +2018,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2018,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2018,7,Paratyphoid fever ††,Paratyphoid,Paratyphoid,Paratyphoid, +2018,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2018,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2018,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2018,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2018,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2018,7,Q fever,NAN,NAN,NAN,NAN +2018,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2018,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2018,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2018,7,Rabies,NAN,NAN,NAN,NAN +2018,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2018,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2018,7,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2018,7,Salmonellosis (excluding paratyphoid fever and typhoid fever) §§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2018,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2018,7,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2018,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2018,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2018,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2018,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2018,7,Syphilis,NAN,NAN,NAN,NAN +2018,7,"Total, all stages ¶¶",Syphilis,Syphilis,Syphilis, +2018,7,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2018,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2018,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2018,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2018,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2018,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2018,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2018,7,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2018,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2018,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2018,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2018,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2018,7,Vibriosis,NAN,NAN,NAN,NAN +2018,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2018,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2018,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2018,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2018,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2018,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2018,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2018,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2018,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2018,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2018,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2018,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2018,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2018,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2018,7,Zika virus,NAN,NAN,NAN,NAN +2018,7,"Zika virus disease, congenital ***",NAN,NAN,NAN,NAN +2018,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2018,7,"Zika virus infection, congenital ***",NAN,NAN,NAN,NAN +2018,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2019,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2019,7,Arboviral diseases,NAN,NAN,NAN,NAN +2019,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2019,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,7,Powassan virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,7,West Nile virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,7,Babesiosis,NAN,NAN,NAN,NAN +2019,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2019,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2019,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2019,7,Botulism,NAN,NAN,NAN,NAN +2019,7,Total,Botulism,Botulism,Botulism, +2019,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2019,7,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2019,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2019,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2019,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2019,7,"Candida auris , clinical †",Candida auris;clinical,Candida auris,CandidaAuris, +2019,7,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2019,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2019,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2019,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2019,7,Coccidioidomycosis §,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2019,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2019,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2019,7,Dengue virus infections ¶,NAN,NAN,NAN,NAN +2019,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2019,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2019,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2019,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2019,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2019,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2019,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2019,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2019,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2019,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2019,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2019,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2019,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2019,7,"Hantavirus infection, non-hantavirus pulmonary syndrome **",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2019,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2019,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2019,7,Hepatitis ††,NAN,NAN,NAN,NAN +2019,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2019,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,7,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,7,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,7,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,7,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2019,7,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2019,7,Invasive pneumococcal disease §§,NAN,NAN,NAN,NAN +2019,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,7,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2019,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2019,7,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2019,7,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2019,7,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2019,7,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2019,7,Lyme disease,NAN,NAN,NAN,NAN +2019,7,Total,Lyme disease,Lyme disease,LymeDisease, +2019,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2019,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2019,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2019,7,Measles ***,NAN,NAN,NAN,NAN +2019,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2019,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2019,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2019,7,Meningococcal disease,NAN,NAN,NAN,NAN +2019,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2019,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2019,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2019,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2019,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2019,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2019,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2019,7,Q fever,NAN,NAN,NAN,NAN +2019,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2019,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2019,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2019,7,Rabies,NAN,NAN,NAN,NAN +2019,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2019,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2019,7,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2019,7,Salmonella Paratyphi infection †††,Paratyphoid,Paratyphoid,Paratyphoid, +2019,7,Salmonella Typhi infection §§§,Typhoid fever,Typhoid,TyphoidFever, +2019,7,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) ¶¶¶,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2019,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2019,7,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2019,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2019,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2019,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2019,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2019,7,Syphilis,NAN,NAN,NAN,NAN +2019,7,"Total, all stages ****",Syphilis,Syphilis,Syphilis, +2019,7,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2019,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2019,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2019,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2019,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2019,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2019,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2019,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2019,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2019,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2019,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2019,7,Vibriosis,NAN,NAN,NAN,NAN +2019,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2019,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2019,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2019,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2019,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2019,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2019,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2019,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2019,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2019,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2019,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2019,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2019,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2019,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2019,7,Zika virus,NAN,NAN,NAN,NAN +2019,7,"Zika virus disease, congenital ††††",NAN,NAN,NAN,NAN +2019,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2019,7,"Zika virus infection, congenital ††††",NAN,NAN,NAN,NAN +2019,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2018,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2018,5,Arboviral diseases,NAN,NAN,NAN,NAN +2018,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2018,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,5,Powassan virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,5,West Nile virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,5,Babesiosis,NAN,NAN,NAN,NAN +2018,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2018,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2018,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2018,5,Botulism,NAN,NAN,NAN,NAN +2018,5,Total,Botulism,Botulism,Botulism, +2018,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2018,5,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2018,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2018,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2018,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2018,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2018,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2018,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2018,5,Coccidioidomycosis *,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2018,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2018,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2018,5,Dengue virus infections †,NAN,NAN,NAN,NAN +2018,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2018,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2018,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2018,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2018,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2018,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2018,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2018,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2018,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2018,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2018,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2018,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2018,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,5,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2018,5,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2018,5,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2018,5,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2018,5,Hepatitis §,NAN,NAN,NAN,NAN +2018,5,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2018,5,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,5,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,5,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,5,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,5,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,5,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,5,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2018,5,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2018,5,Invasive pneumococcal disease ¶,NAN,NAN,NAN,NAN +2018,5,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,5,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2018,5,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2018,5,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2018,5,Lyme disease,NAN,NAN,NAN,NAN +2018,5,Total,Lyme disease,Lyme disease,LymeDisease, +2018,5,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2018,5,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2018,5,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2018,5,Measles,NAN,NAN,NAN,NAN +2018,5,Total,Measles,Measles,Measles,bio/DOID_8622 +2018,5,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2018,5,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2018,5,Meningococcal disease,NAN,NAN,NAN,NAN +2018,5,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,5,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,5,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,5,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,5,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,5,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2018,5,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2018,5,Paratyphoid fever **,Paratyphoid,Paratyphoid,Paratyphoid, +2018,5,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2018,5,Plague,Plague,Plague,Plague,bio/DOID_3482 +2018,5,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2018,5,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2018,5,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2018,5,Q fever,NAN,NAN,NAN,NAN +2018,5,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2018,5,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2018,5,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2018,5,Rabies,NAN,NAN,NAN,NAN +2018,5,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2018,5,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2018,5,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2018,5,Salmonellosis (excluding paratyphoid fever and typhoid fever) ††,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2018,5,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2018,5,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2018,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2018,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2018,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2018,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2018,5,Syphilis,NAN,NAN,NAN,NAN +2018,5,"Total, all stages §§",Syphilis,Syphilis,Syphilis, +2018,5,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2018,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2018,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2018,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2018,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2018,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2018,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2018,5,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2018,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2018,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2018,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2018,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2018,5,Vibriosis,NAN,NAN,NAN,NAN +2018,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2018,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2018,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2018,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2018,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2018,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2018,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2018,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2018,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2018,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2018,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2018,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2018,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2018,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2018,5,Zika virus,NAN,NAN,NAN,NAN +2018,5,"Zika virus disease, congenital ¶¶",NAN,NAN,NAN,NAN +2018,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2018,5,"Zika virus infection, congenital ¶¶",NAN,NAN,NAN,NAN +2018,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2016,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2016,4,Arboviral diseases,NAN,NAN,NAN,NAN +2016,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2016,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,4,Powassan virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,4,West Nile virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,4,Babesiosis,NAN,NAN,NAN,NAN +2016,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2016,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2016,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2016,4,Botulism,NAN,NAN,NAN,NAN +2016,4,Total,Botulism,Botulism,Botulism, +2016,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2016,4,Infant *,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2016,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2016,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2016,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2016,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2016,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2016,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2016,4,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2016,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2016,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2016,4,Dengue virus infections §,NAN,NAN,NAN,NAN +2016,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2016,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2016,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2016,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2016,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2016,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2016,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2016,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2016,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2016,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2016,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2016,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2016,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Age <5 years ¶,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2016,4,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2016,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2016,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2016,4,Hepatitis **,NAN,NAN,NAN,NAN +2016,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2016,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,4,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2016,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2016,4,Influenza-associated pediatric mortality §§,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2016,4,Invasive pneumococcal disease,NAN,NAN,NAN,NAN +2016,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Age <5 years ¶,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,4,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2016,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2016,4,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2016,4,Lyme disease,NAN,NAN,NAN,NAN +2016,4,Total,Lyme disease,Lyme disease,LymeDisease, +2016,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2016,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2016,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2016,4,Measles,NAN,NAN,NAN,NAN +2016,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2016,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2016,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2016,4,Meningococcal disease,NAN,NAN,NAN,NAN +2016,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2016,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2016,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2016,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2016,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2016,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2016,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2016,4,Q fever,NAN,NAN,NAN,NAN +2016,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2016,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2016,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2016,4,Rabies,NAN,NAN,NAN,NAN +2016,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2016,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2016,4,"Rubella, congenital syndrome *",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2016,4,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2016,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2016,4,Shiga toxin-producing Escherichia coli ¶¶,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2016,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2016,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2016,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2016,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2016,4,Syphilis,NAN,NAN,NAN,NAN +2016,4,"Total, all stages ***",Syphilis,Syphilis,Syphilis, +2016,4,Congenital *,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2016,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2016,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2016,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2016,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2016,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2016,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2016,4,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2016,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2016,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2016,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2016,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2016,4,Vibriosis,NAN,NAN,NAN,NAN +2016,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2016,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2016,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2016,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2016,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2016,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2016,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2016,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2016,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2016,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2016,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2016,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2016,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2016,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2016,4,Zika virus,NAN,NAN,NAN,NAN +2016,4,"Zika virus disease, congenital *,†††",NAN,NAN,NAN,NAN +2016,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2016,4,"Zika virus infection, congenital *,†††",NAN,NAN,NAN,NAN +2016,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2019,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2019,6,Arboviral diseases,NAN,NAN,NAN,NAN +2019,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2019,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,6,Powassan virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,6,West Nile virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,6,Babesiosis,NAN,NAN,NAN,NAN +2019,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2019,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2019,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2019,6,Botulism,NAN,NAN,NAN,NAN +2019,6,Total,Botulism,Botulism,Botulism, +2019,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2019,6,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2019,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2019,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2019,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2019,6,"Candida auris , clinical §",Candida auris;clinical,Candida auris,CandidaAuris, +2019,6,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2019,6,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2019,6,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2019,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2019,6,Coccidioidomycosis ¶,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2019,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2019,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2019,6,Dengue virus infections **,NAN,NAN,NAN,NAN +2019,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2019,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2019,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2019,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2019,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2019,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2019,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2019,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2019,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2019,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2019,6,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2019,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2019,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2019,6,"Hantavirus infection, non-hantavirus pulmonary syndrome ††",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2019,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2019,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2019,6,Hepatitis §§,NAN,NAN,NAN,NAN +2019,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2019,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,6,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,6,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,6,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,6,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2019,6,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2019,6,Invasive pneumococcal disease ¶¶,NAN,NAN,NAN,NAN +2019,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,6,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2019,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2019,6,Listeriosis ***,NAN,NAN,NAN,NAN +2019,6,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2019,6,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2019,6,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2019,6,Lyme disease,NAN,NAN,NAN,NAN +2019,6,Total,Lyme disease,Lyme disease,LymeDisease, +2019,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2019,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2019,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2019,6,Measles †††,NAN,NAN,NAN,NAN +2019,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2019,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2019,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2019,6,Meningococcal disease,NAN,NAN,NAN,NAN +2019,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2019,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2019,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2019,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2019,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2019,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2019,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2019,6,Q fever,NAN,NAN,NAN,NAN +2019,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2019,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2019,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2019,6,Rabies,NAN,NAN,NAN,NAN +2019,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2019,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2019,6,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2019,6,Salmonella Paratyphi infection §§§,Paratyphoid,Paratyphoid,Paratyphoid, +2019,6,Salmonella Typhi infection ¶¶¶,Typhoid fever,Typhoid,TyphoidFever, +2019,6,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) ****,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2019,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2019,6,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2019,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2019,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2019,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2019,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2019,6,Syphilis,NAN,NAN,NAN,NAN +2019,6,"Total, all stages ††††",Syphilis,Syphilis,Syphilis, +2019,6,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2019,6,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2019,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2019,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2019,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2019,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2019,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2019,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2019,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2019,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2019,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2019,6,Vibriosis,NAN,NAN,NAN,NAN +2019,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2019,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2019,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2019,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2019,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2019,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2019,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2019,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2019,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2019,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2019,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2019,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2019,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2019,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2019,6,Zika virus,NAN,NAN,NAN,NAN +2019,6,"Zika virus disease, congenital §§§§",NAN,NAN,NAN,NAN +2019,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2019,6,"Zika virus infection, congenital §§§§",NAN,NAN,NAN,NAN +2019,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2017,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2017,6,Arboviral diseases,NAN,NAN,NAN,NAN +2017,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2017,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2017,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2017,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2017,6,Powassan virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2017,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2017,6,West Nile virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2017,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2017,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2017,6,Babesiosis,NAN,NAN,NAN,NAN +2017,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2017,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2017,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2017,6,Botulism,NAN,NAN,NAN,NAN +2017,6,Total,Botulism,Botulism,Botulism, +2017,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2017,6,Infant †,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2017,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2017,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2017,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2017,6,Chancroid §,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2017,6,Chlamydia trachomatis infection §,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2017,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2017,6,Coccidioidomycosis ¶,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2017,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2017,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2017,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2017,6,Dengue virus infections **,NAN,NAN,NAN,NAN +2017,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2017,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2017,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2017,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2017,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2017,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2017,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2017,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2017,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2017,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2017,6,Gonorrhea §,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2017,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2017,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Age <5 years ††,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2017,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2017,6,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2017,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2017,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2017,6,Hepatitis §§,NAN,NAN,NAN,NAN +2017,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2017,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,6,"B, perinatal infection ¶¶",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2017,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,6,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,6,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2017,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2017,6,Influenza-associated pediatric mortality ***,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2017,6,Invasive pneumococcal disease †††,NAN,NAN,NAN,NAN +2017,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Age <5 years ††,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2017,6,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2017,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2017,6,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2017,6,Lyme disease,NAN,NAN,NAN,NAN +2017,6,Total,Lyme disease,Lyme disease,LymeDisease, +2017,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2017,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2017,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2017,6,Measles,NAN,NAN,NAN,NAN +2017,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2017,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2017,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2017,6,Meningococcal disease,NAN,NAN,NAN,NAN +2017,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2017,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2017,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2017,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2017,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2017,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2017,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2017,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2017,6,Q fever,NAN,NAN,NAN,NAN +2017,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2017,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2017,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2017,6,Rabies,NAN,NAN,NAN,NAN +2017,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2017,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2017,6,"Rubella, congenital syndrome †",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2017,6,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2017,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2017,6,Shiga toxin-producing Escherichia coli §§§,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2017,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2017,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2017,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2017,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2017,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2017,6,Syphilis,NAN,NAN,NAN,NAN +2017,6,"Total, all stages §",Syphilis,Syphilis,Syphilis, +2017,6,Congenital †,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2017,6,Primary and secondary §,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2017,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2017,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2017,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2017,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2017,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2017,6,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2017,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2017,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2017,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2017,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2017,6,Vibriosis,NAN,NAN,NAN,NAN +2017,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2017,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2017,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2017,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2017,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2017,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2017,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2017,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2017,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2017,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2017,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2017,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2017,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2017,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2017,6,Zika virus,NAN,NAN,NAN,NAN +2017,6,"Zika virus disease, congenital †,¶¶¶",NAN,NAN,NAN,NAN +2017,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2017,6,"Zika virus infection, congenital †,¶¶¶",NAN,NAN,NAN,NAN +2017,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2018,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2018,4,Arboviral diseases,NAN,NAN,NAN,NAN +2018,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2018,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,4,Powassan virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,4,West Nile virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,4,Babesiosis,NAN,NAN,NAN,NAN +2018,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2018,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2018,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2018,4,Botulism,NAN,NAN,NAN,NAN +2018,4,Total,Botulism,Botulism,Botulism, +2018,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2018,4,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2018,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2018,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2018,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2018,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2018,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2018,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2018,4,Coccidioidomycosis *,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2018,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2018,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2018,4,Dengue virus infections †,NAN,NAN,NAN,NAN +2018,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2018,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2018,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2018,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2018,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2018,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2018,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2018,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2018,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2018,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2018,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2018,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2018,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2018,4,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2018,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2018,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2018,4,Hepatitis §,NAN,NAN,NAN,NAN +2018,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2018,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,4,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,4,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,4,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,4,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2018,4,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2018,4,Invasive pneumococcal disease ¶,NAN,NAN,NAN,NAN +2018,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,4,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2018,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2018,4,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2018,4,Lyme disease,NAN,NAN,NAN,NAN +2018,4,Total,Lyme disease,Lyme disease,LymeDisease, +2018,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2018,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2018,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2018,4,Measles,NAN,NAN,NAN,NAN +2018,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2018,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2018,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2018,4,Meningococcal disease,NAN,NAN,NAN,NAN +2018,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2018,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2018,4,Paratyphoid fever **,Paratyphoid,Paratyphoid,Paratyphoid, +2018,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2018,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2018,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2018,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2018,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2018,4,Q fever,NAN,NAN,NAN,NAN +2018,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2018,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2018,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2018,4,Rabies,NAN,NAN,NAN,NAN +2018,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2018,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2018,4,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2018,4,Salmonellosis (excluding paratyphoid fever and typhoid fever) ††,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2018,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2018,4,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2018,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2018,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2018,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2018,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2018,4,Syphilis,NAN,NAN,NAN,NAN +2018,4,"Total, all stages §§",Syphilis,Syphilis,Syphilis, +2018,4,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2018,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2018,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2018,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2018,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2018,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2018,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2018,4,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2018,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2018,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2018,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2018,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2018,4,Vibriosis,NAN,NAN,NAN,NAN +2018,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2018,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2018,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2018,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2018,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2018,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2018,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2018,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2018,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2018,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2018,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2018,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2018,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2018,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2018,4,Zika virus,NAN,NAN,NAN,NAN +2018,4,"Zika virus disease, congenital ¶¶",NAN,NAN,NAN,NAN +2018,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2018,4,"Zika virus infection, congenital ¶¶",NAN,NAN,NAN,NAN +2018,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2019,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2019,4,Arboviral diseases,NAN,NAN,NAN,NAN +2019,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2019,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,4,Powassan virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,4,West Nile virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,4,Babesiosis,NAN,NAN,NAN,NAN +2019,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2019,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2019,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2019,4,Botulism,NAN,NAN,NAN,NAN +2019,4,Total,Botulism,Botulism,Botulism, +2019,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2019,4,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2019,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2019,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2019,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2019,4,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2019,4,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2019,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2019,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2019,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2019,4,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2019,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2019,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2019,4,Dengue virus infections §,NAN,NAN,NAN,NAN +2019,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2019,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2019,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2019,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2019,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2019,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2019,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2019,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2019,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2019,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2019,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2019,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2019,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2019,4,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2019,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2019,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2019,4,Hepatitis **,NAN,NAN,NAN,NAN +2019,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2019,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,4,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,4,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,4,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,4,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2019,4,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2019,4,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2019,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,4,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2019,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2019,4,Listeriosis §§,NAN,NAN,NAN,NAN +2019,4,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2019,4,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2019,4,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2019,4,Lyme disease,NAN,NAN,NAN,NAN +2019,4,Total,Lyme disease,Lyme disease,LymeDisease, +2019,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2019,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2019,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2019,4,Measles ¶¶,NAN,NAN,NAN,NAN +2019,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2019,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2019,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2019,4,Meningococcal disease,NAN,NAN,NAN,NAN +2019,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2019,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2019,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2019,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2019,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2019,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2019,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2019,4,Q fever,NAN,NAN,NAN,NAN +2019,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2019,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2019,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2019,4,Rabies,NAN,NAN,NAN,NAN +2019,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2019,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2019,4,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2019,4,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2019,4,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2019,4,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2019,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2019,4,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2019,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2019,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2019,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2019,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2019,4,Syphilis,NAN,NAN,NAN,NAN +2019,4,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2019,4,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2019,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2019,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2019,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2019,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2019,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2019,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2019,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2019,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2019,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2019,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2019,4,Vibriosis,NAN,NAN,NAN,NAN +2019,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2019,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2019,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2019,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2019,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2019,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2019,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2019,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2019,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2019,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2019,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2019,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2019,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2019,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2019,4,Zika virus,NAN,NAN,NAN,NAN +2019,4,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2019,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2019,4,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2019,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2016,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2016,7,Arboviral diseases,NAN,NAN,NAN,NAN +2016,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2016,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,7,Powassan virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,7,West Nile virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,7,Babesiosis,NAN,NAN,NAN,NAN +2016,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2016,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2016,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2016,7,Botulism,NAN,NAN,NAN,NAN +2016,7,Total,Botulism,Botulism,Botulism, +2016,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2016,7,Infant †,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2016,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2016,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2016,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2016,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2016,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2016,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2016,7,Coccidioidomycosis §,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2016,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2016,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2016,7,Dengue virus infections ¶,NAN,NAN,NAN,NAN +2016,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2016,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2016,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2016,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2016,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2016,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2016,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2016,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2016,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2016,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2016,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2016,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2016,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Age <5 years **,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2016,7,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2016,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2016,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2016,7,Hepatitis ††,NAN,NAN,NAN,NAN +2016,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2016,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,7,"B, perinatal infection §§",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2016,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2016,7,Influenza-associated pediatric mortality ¶¶,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2016,7,Invasive pneumococcal disease,NAN,NAN,NAN,NAN +2016,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Age <5 years **,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,7,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2016,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2016,7,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2016,7,Lyme disease,NAN,NAN,NAN,NAN +2016,7,Total,Lyme disease,Lyme disease,LymeDisease, +2016,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2016,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2016,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2016,7,Measles,NAN,NAN,NAN,NAN +2016,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2016,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2016,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2016,7,Meningococcal disease,NAN,NAN,NAN,NAN +2016,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2016,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2016,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2016,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2016,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2016,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2016,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2016,7,Q fever,NAN,NAN,NAN,NAN +2016,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2016,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2016,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2016,7,Rabies,NAN,NAN,NAN,NAN +2016,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2016,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2016,7,"Rubella, congenital syndrome †",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2016,7,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2016,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2016,7,Shiga toxin-producing Escherichia coli ***,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2016,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2016,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2016,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2016,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2016,7,Syphilis,NAN,NAN,NAN,NAN +2016,7,"Total, all stages †††",Syphilis,Syphilis,Syphilis, +2016,7,Congenital †,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2016,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2016,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2016,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2016,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2016,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2016,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2016,7,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2016,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2016,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2016,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2016,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2016,7,Vibriosis,NAN,NAN,NAN,NAN +2016,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2016,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2016,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2016,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2016,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2016,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2016,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2016,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2016,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2016,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2016,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2016,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2016,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2016,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2016,7,Zika virus,NAN,NAN,NAN,NAN +2016,7,"Zika virus disease, congenital †,§§§",NAN,NAN,NAN,NAN +2016,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2016,7,"Zika virus infection, congenital †,§§§",NAN,NAN,NAN,NAN +2016,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2016,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2016,6,Arboviral diseases,NAN,NAN,NAN,NAN +2016,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2016,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2016,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2016,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2016,6,Powassan virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2016,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2016,6,West Nile virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2016,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2016,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2016,6,Babesiosis,NAN,NAN,NAN,NAN +2016,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2016,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2016,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2016,6,Botulism,NAN,NAN,NAN,NAN +2016,6,Total,Botulism,Botulism,Botulism, +2016,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2016,6,Infant †,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2016,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2016,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2016,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2016,6,Chancroid §,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2016,6,Chlamydia trachomatis infection §,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2016,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2016,6,Coccidioidomycosis ¶,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2016,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2016,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2016,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2016,6,Dengue virus infections **,NAN,NAN,NAN,NAN +2016,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2016,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2016,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2016,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2016,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2016,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2016,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2016,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2016,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2016,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2016,6,Gonorrhea §,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2016,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2016,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Age <5 years ††,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2016,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2016,6,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2016,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2016,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2016,6,Hepatitis §§,NAN,NAN,NAN,NAN +2016,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2016,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,6,"B, perinatal infection ¶¶",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2016,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2016,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2016,6,Influenza-associated pediatric mortality ***,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2016,6,Invasive pneumococcal disease,NAN,NAN,NAN,NAN +2016,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Age <5 years ††,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2016,6,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2016,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2016,6,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2016,6,Lyme disease,NAN,NAN,NAN,NAN +2016,6,Total,Lyme disease,Lyme disease,LymeDisease, +2016,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2016,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2016,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2016,6,Measles,NAN,NAN,NAN,NAN +2016,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2016,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2016,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2016,6,Meningococcal disease,NAN,NAN,NAN,NAN +2016,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2016,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2016,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2016,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2016,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2016,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2016,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2016,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2016,6,Q fever,NAN,NAN,NAN,NAN +2016,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2016,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2016,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2016,6,Rabies,NAN,NAN,NAN,NAN +2016,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2016,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2016,6,"Rubella, congenital syndrome †",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2016,6,Salmonellosis,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2016,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2016,6,Shiga toxin-producing Escherichia coli †††,Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2016,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2016,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2016,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2016,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2016,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2016,6,Syphilis,NAN,NAN,NAN,NAN +2016,6,"Total, all stages §,§§§",Syphilis,Syphilis,Syphilis, +2016,6,Congenital †,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2016,6,Primary and secondary §,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2016,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2016,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2016,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2016,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2016,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2016,6,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2016,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2016,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2016,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2016,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2016,6,Vibriosis,NAN,NAN,NAN,NAN +2016,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2016,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2016,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2016,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2016,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2016,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2016,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2016,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2016,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2016,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2016,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2016,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2016,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2016,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2016,6,Zika virus,NAN,NAN,NAN,NAN +2016,6,"Zika virus disease, congenital †,¶¶¶",NAN,NAN,NAN,NAN +2016,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2016,6,"Zika virus infection, congenital †,¶¶¶",NAN,NAN,NAN,NAN +2016,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2018,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2018,6,Arboviral diseases,NAN,NAN,NAN,NAN +2018,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2018,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2018,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2018,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2018,6,Powassan virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2018,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2018,6,West Nile virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2018,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2018,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2018,6,Babesiosis,NAN,NAN,NAN,NAN +2018,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2018,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2018,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2018,6,Botulism,NAN,NAN,NAN,NAN +2018,6,Total,Botulism,Botulism,Botulism, +2018,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2018,6,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2018,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2018,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2018,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2018,6,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2018,6,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2018,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2018,6,Coccidioidomycosis §,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2018,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2018,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2018,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2018,6,Dengue virus infections ¶,NAN,NAN,NAN,NAN +2018,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2018,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2018,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2018,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2018,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2018,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2018,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2018,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2018,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2018,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2018,6,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2018,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2018,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2018,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2018,6,"Hantavirus infection, non-hantavirus pulmonary syndrome",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2018,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2018,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2018,6,Hepatitis **,NAN,NAN,NAN,NAN +2018,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2018,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,6,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2018,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,6,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,6,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,6,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2018,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2018,6,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2018,6,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2018,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2018,6,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2018,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2018,6,Listeriosis,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2018,6,Lyme disease,NAN,NAN,NAN,NAN +2018,6,Total,Lyme disease,Lyme disease,LymeDisease, +2018,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2018,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2018,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2018,6,Measles,NAN,NAN,NAN,NAN +2018,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2018,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2018,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2018,6,Meningococcal disease,NAN,NAN,NAN,NAN +2018,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2018,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2018,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2018,6,Paratyphoid fever §§,Paratyphoid,Paratyphoid,Paratyphoid, +2018,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2018,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2018,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2018,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2018,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2018,6,Q fever,NAN,NAN,NAN,NAN +2018,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2018,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2018,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2018,6,Rabies,NAN,NAN,NAN,NAN +2018,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2018,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2018,6,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2018,6,Salmonellosis (excluding paratyphoid fever and typhoid fever) ¶¶,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2018,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2018,6,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2018,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2018,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2018,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2018,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2018,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2018,6,Syphilis,NAN,NAN,NAN,NAN +2018,6,"Total, all stages ***",Syphilis,Syphilis,Syphilis, +2018,6,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2018,6,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2018,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2018,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2018,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2018,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2018,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2018,6,Typhoid fever,Typhoid fever,Typhoid,TyphoidFever, +2018,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2018,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2018,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2018,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2018,6,Vibriosis,NAN,NAN,NAN,NAN +2018,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2018,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2018,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2018,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2018,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2018,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2018,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2018,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2018,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2018,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2018,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2018,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2018,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2018,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2018,6,Zika virus,NAN,NAN,NAN,NAN +2018,6,"Zika virus disease, congenital †††",NAN,NAN,NAN,NAN +2018,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2018,6,"Zika virus infection, congenital †††",NAN,NAN,NAN,NAN +2018,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2019,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2019,5,Arboviral diseases,NAN,NAN,NAN,NAN +2019,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2019,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2019,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2019,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2019,5,Powassan virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2019,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2019,5,West Nile virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2019,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2019,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2019,5,Babesiosis,NAN,NAN,NAN,NAN +2019,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2019,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2019,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2019,5,Botulism,NAN,NAN,NAN,NAN +2019,5,Total,Botulism,Botulism,Botulism, +2019,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2019,5,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2019,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2019,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2019,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2019,5,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2019,5,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2019,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2019,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2019,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2019,5,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2019,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2019,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2019,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2019,5,Dengue virus infections §,NAN,NAN,NAN,NAN +2019,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2019,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2019,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2019,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2019,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2019,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2019,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2019,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2019,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2019,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2019,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2019,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2019,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2019,5,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2019,5,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2019,5,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2019,5,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2019,5,Hepatitis **,NAN,NAN,NAN,NAN +2019,5,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2019,5,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,5,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2019,5,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,5,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,5,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,5,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2019,5,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2019,5,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2019,5,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2019,5,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2019,5,Legionellosis,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2019,5,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2019,5,Listeriosis §§,NAN,NAN,NAN,NAN +2019,5,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2019,5,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2019,5,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2019,5,Lyme disease,NAN,NAN,NAN,NAN +2019,5,Total,Lyme disease,Lyme disease,LymeDisease, +2019,5,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2019,5,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2019,5,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2019,5,Measles ¶¶,NAN,NAN,NAN,NAN +2019,5,Total,Measles,Measles,Measles,bio/DOID_8622 +2019,5,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2019,5,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2019,5,Meningococcal disease,NAN,NAN,NAN,NAN +2019,5,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,5,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,5,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,5,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,5,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2019,5,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2019,5,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2019,5,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2019,5,Plague,Plague,Plague,Plague,bio/DOID_3482 +2019,5,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2019,5,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2019,5,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2019,5,Q fever,NAN,NAN,NAN,NAN +2019,5,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2019,5,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2019,5,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2019,5,Rabies,NAN,NAN,NAN,NAN +2019,5,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2019,5,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2019,5,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2019,5,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2019,5,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2019,5,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2019,5,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2019,5,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2019,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2019,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2019,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2019,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2019,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2019,5,Syphilis,NAN,NAN,NAN,NAN +2019,5,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2019,5,Congenital,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2019,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2019,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2019,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2019,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2019,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2019,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2019,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2019,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2019,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2019,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2019,5,Vibriosis,NAN,NAN,NAN,NAN +2019,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2019,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2019,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2019,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2019,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2019,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2019,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2019,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2019,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2019,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2019,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2019,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2019,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2019,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2019,5,Zika virus,NAN,NAN,NAN,NAN +2019,5,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2019,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2019,5,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2019,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2020,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2020,5,Arboviral diseases,NAN,NAN,NAN,NAN +2020,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2020,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,5,Powassan virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,5,West Nile virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,5,Babesiosis,NAN,NAN,NAN,NAN +2020,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2020,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2020,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2020,5,Botulism,NAN,NAN,NAN,NAN +2020,5,Total,Botulism,Botulism,Botulism, +2020,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2020,5,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2020,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2020,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2020,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2020,5,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2020,5,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2020,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2020,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2020,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2020,5,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2020,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2020,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2020,5,Dengue virus infections §,NAN,NAN,NAN,NAN +2020,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2020,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2020,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2020,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2020,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2020,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2020,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2020,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2020,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2020,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2020,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2020,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2020,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,5,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2020,5,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2020,5,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2020,5,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2020,5,Hepatitis **,NAN,NAN,NAN,NAN +2020,5,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,5,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,5,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,5,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,5,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,5,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,5,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,5,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2020,5,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2020,5,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2020,5,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,5,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2020,5,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2020,5,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2020,5,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2020,5,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2020,5,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2020,5,Lyme disease,NAN,NAN,NAN,NAN +2020,5,Total,Lyme disease,Lyme disease,LymeDisease, +2020,5,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2020,5,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2020,5,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2020,5,Measles ¶¶,NAN,NAN,NAN,NAN +2020,5,Total,Measles,Measles,Measles,bio/DOID_8622 +2020,5,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2020,5,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2020,5,Meningococcal disease,NAN,NAN,NAN,NAN +2020,5,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,5,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,5,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,5,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,5,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,5,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2020,5,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2020,5,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2020,5,Plague,Plague,Plague,Plague,bio/DOID_3482 +2020,5,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2020,5,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2020,5,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2020,5,Q fever,NAN,NAN,NAN,NAN +2020,5,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2020,5,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2020,5,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2020,5,Rabies,NAN,NAN,NAN,NAN +2020,5,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2020,5,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2020,5,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2020,5,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2020,5,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2020,5,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2020,5,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,5,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2020,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2020,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2020,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2020,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2020,5,Syphilis,NAN,NAN,NAN,NAN +2020,5,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2020,5,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2020,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2020,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2020,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2020,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2020,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2020,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2020,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2020,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2020,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2020,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2020,5,Vibriosis,NAN,NAN,NAN,NAN +2020,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2020,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2020,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2020,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2020,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2020,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2020,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2020,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2020,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2020,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2020,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2020,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2020,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2020,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2020,5,Zika virus,NAN,NAN,NAN,NAN +2020,5,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2020,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2020,5,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2020,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2020,5,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,5,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,5,Hepatitis C,Hepatitis C,Hepatitis C,Hepatitis C, +2020,5,Coronavirus Disease 2019 (COVID-19),COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,5,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,5,Probable †,NAN,NAN,NAN, +2020,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2020,4,Arboviral diseases,NAN,NAN,NAN,NAN +2020,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2020,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,4,Powassan virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,4,West Nile virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,4,Babesiosis,NAN,NAN,NAN,NAN +2020,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2020,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2020,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2020,4,Botulism,NAN,NAN,NAN,NAN +2020,4,Total,Botulism,Botulism,Botulism, +2020,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2020,4,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2020,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2020,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2020,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2020,4,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2020,4,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2020,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2020,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2020,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2020,4,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2020,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2020,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2020,4,Dengue virus infections §,NAN,NAN,NAN,NAN +2020,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2020,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2020,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2020,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2020,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2020,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2020,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2020,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2020,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2020,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2020,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2020,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2020,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2020,4,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2020,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2020,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2020,4,Hepatitis **,NAN,NAN,NAN,NAN +2020,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,4,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,4,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,4,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,4,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2020,4,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2020,4,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2020,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,4,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2020,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2020,4,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2020,4,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2020,4,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2020,4,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2020,4,Lyme disease,NAN,NAN,NAN,NAN +2020,4,Total,Lyme disease,Lyme disease,LymeDisease, +2020,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2020,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2020,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2020,4,Measles ¶¶,NAN,NAN,NAN,NAN +2020,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2020,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2020,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2020,4,Meningococcal disease,NAN,NAN,NAN,NAN +2020,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2020,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2020,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2020,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2020,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2020,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2020,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2020,4,Q fever,NAN,NAN,NAN,NAN +2020,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2020,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2020,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2020,4,Rabies,NAN,NAN,NAN,NAN +2020,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2020,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2020,4,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2020,4,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2020,4,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2020,4,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2020,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,4,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2020,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2020,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2020,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2020,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2020,4,Syphilis,NAN,NAN,NAN,NAN +2020,4,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2020,4,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2020,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2020,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2020,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2020,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2020,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2020,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2020,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2020,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2020,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2020,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2020,4,Vibriosis,NAN,NAN,NAN,NAN +2020,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2020,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2020,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2020,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2020,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2020,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2020,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2020,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2020,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2020,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2020,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2020,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2020,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2020,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2020,4,Zika virus,NAN,NAN,NAN,NAN +2020,4,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2020,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2020,4,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2020,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2020,4,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,4,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,4,Hepatitis C,Hepatitis C,Hepatitis C,Hepatitis C, +2020,4,Coronavirus Disease 2019 (COVID-19),COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,4,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,4,Probable †,NAN,NAN,NAN, +2020,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2020,6,Arboviral diseases,NAN,NAN,NAN,NAN +2020,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2020,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,6,Powassan virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,6,West Nile virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,6,Babesiosis,NAN,NAN,NAN,NAN +2020,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2020,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2020,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2020,6,Botulism,NAN,NAN,NAN,NAN +2020,6,Total,Botulism,Botulism,Botulism, +2020,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2020,6,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2020,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2020,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2020,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2020,6,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2020,6,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2020,6,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2020,6,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2020,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2020,6,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2020,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2020,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2020,6,Dengue virus infections §,NAN,NAN,NAN,NAN +2020,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2020,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2020,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2020,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2020,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2020,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2020,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2020,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2020,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2020,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2020,6,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2020,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2020,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2020,6,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2020,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2020,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2020,6,Hepatitis **,NAN,NAN,NAN,NAN +2020,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,6,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,6,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,6,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,6,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2020,6,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2020,6,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2020,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,6,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2020,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2020,6,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2020,6,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2020,6,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2020,6,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2020,6,Lyme disease,NAN,NAN,NAN,NAN +2020,6,Total,Lyme disease,Lyme disease,LymeDisease, +2020,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2020,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2020,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2020,6,Measles ¶¶,NAN,NAN,NAN,NAN +2020,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2020,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2020,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2020,6,Meningococcal disease,NAN,NAN,NAN,NAN +2020,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2020,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2020,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2020,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2020,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2020,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2020,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2020,6,Q fever,NAN,NAN,NAN,NAN +2020,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2020,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2020,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2020,6,Rabies,NAN,NAN,NAN,NAN +2020,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2020,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2020,6,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2020,6,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2020,6,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2020,6,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2020,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,6,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2020,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2020,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2020,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2020,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2020,6,Syphilis,NAN,NAN,NAN,NAN +2020,6,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2020,6,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2020,6,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2020,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2020,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2020,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2020,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2020,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2020,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2020,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2020,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2020,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2020,6,Vibriosis,NAN,NAN,NAN,NAN +2020,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2020,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2020,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2020,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2020,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2020,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2020,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2020,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2020,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2020,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2020,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2020,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2020,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2020,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2020,6,Zika virus,NAN,NAN,NAN,NAN +2020,6,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2020,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2020,6,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2020,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2020,6,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,6,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,6,Hepatitis C,Hepatitis C,Hepatitis C,Hepatitis C, +2020,6,Coronavirus Disease 2019 (COVID-19),COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,6,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,6,Probable †,NAN,NAN,NAN, +2020,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2020,7,Arboviral diseases,NAN,NAN,NAN,NAN +2020,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2020,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2020,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2020,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2020,7,Powassan virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2020,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2020,7,West Nile virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2020,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2020,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2020,7,Babesiosis,NAN,NAN,NAN,NAN +2020,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2020,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2020,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2020,7,Botulism,NAN,NAN,NAN,NAN +2020,7,Total,Botulism,Botulism,Botulism, +2020,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2020,7,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2020,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2020,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2020,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2020,7,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2020,7,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2020,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2020,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2020,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2020,7,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2020,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2020,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2020,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2020,7,Dengue virus infections §,NAN,NAN,NAN,NAN +2020,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2020,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2020,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2020,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2020,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2020,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2020,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2020,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2020,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2020,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2020,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2020,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2020,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2020,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2020,7,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2020,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2020,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2020,7,Hepatitis **,NAN,NAN,NAN,NAN +2020,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,7,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,7,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,7,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,7,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2020,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2020,7,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2020,7,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2020,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2020,7,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2020,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2020,7,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2020,7,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2020,7,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2020,7,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2020,7,Lyme disease,NAN,NAN,NAN,NAN +2020,7,Total,Lyme disease,Lyme disease,LymeDisease, +2020,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2020,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2020,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2020,7,Measles ¶¶,NAN,NAN,NAN,NAN +2020,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2020,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2020,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2020,7,Meningococcal disease,NAN,NAN,NAN,NAN +2020,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2020,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2020,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2020,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2020,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2020,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2020,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2020,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2020,7,Q fever,NAN,NAN,NAN,NAN +2020,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2020,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2020,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2020,7,Rabies,NAN,NAN,NAN,NAN +2020,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2020,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2020,7,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2020,7,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2020,7,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2020,7,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2020,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,7,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2020,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2020,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2020,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2020,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2020,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2020,7,Syphilis,NAN,NAN,NAN,NAN +2020,7,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2020,7,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2020,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2020,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2020,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2020,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2020,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2020,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2020,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2020,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2020,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2020,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2020,7,Vibriosis,NAN,NAN,NAN,NAN +2020,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2020,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2020,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2020,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2020,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2020,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2020,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2020,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2020,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2020,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2020,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2020,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2020,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2020,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2020,7,Zika virus,NAN,NAN,NAN,NAN +2020,7,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2020,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2020,7,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2020,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2020,7,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2020,7,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,7,Hepatitis C,Hepatitis C,Hepatitis C,Hepatitis C, +2020,7,Coronavirus Disease 2019 (COVID-19),COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2020,7,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2020,7,Probable †,NAN,NAN,NAN, +2021,5,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2021,5,Arboviral diseases,NAN,NAN,NAN,NAN +2021,5,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2021,5,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,5,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,5,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,5,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,5,La Crosse virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,5,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,5,Powassan virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,5,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,5,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,5,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,5,West Nile virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,5,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,5,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,5,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,5,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,5,Babesiosis,NAN,NAN,NAN,NAN +2021,5,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2021,5,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2021,5,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2021,5,Botulism,NAN,NAN,NAN,NAN +2021,5,Total,Botulism,Botulism,Botulism, +2021,5,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2021,5,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2021,5,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2021,5,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2021,5,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2021,5,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2021,5,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2021,5,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2021,5,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2021,5,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2021,5,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2021,5,Cryptosporidiosis,NAN,NAN,NAN,NAN +2021,5,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,5,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,5,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,5,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2021,5,Dengue virus infections §,NAN,NAN,NAN,NAN +2021,5,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2021,5,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2021,5,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2021,5,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2021,5,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2021,5,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2021,5,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2021,5,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2021,5,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2021,5,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2021,5,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2021,5,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2021,5,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,5,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2021,5,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2021,5,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2021,5,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2021,5,Hepatitis **,NAN,NAN,NAN,NAN +2021,5,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,5,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,5,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,5,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,5,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,5,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,5,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,5,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2021,5,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2021,5,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2021,5,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,5,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2021,5,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2021,5,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2021,5,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2021,5,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2021,5,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2021,5,Lyme disease,NAN,NAN,NAN,NAN +2021,5,Total,Lyme disease,Lyme disease,LymeDisease, +2021,5,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2021,5,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2021,5,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2021,5,Measles ¶¶,NAN,NAN,NAN,NAN +2021,5,Total,Measles,Measles,Measles,bio/DOID_8622 +2021,5,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2021,5,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2021,5,Meningococcal disease,NAN,NAN,NAN,NAN +2021,5,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,5,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,5,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,5,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,5,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,5,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2021,5,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2021,5,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2021,5,Plague,Plague,Plague,Plague,bio/DOID_3482 +2021,5,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2021,5,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2021,5,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2021,5,Q fever,NAN,NAN,NAN,NAN +2021,5,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2021,5,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2021,5,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2021,5,Rabies,NAN,NAN,NAN,NAN +2021,5,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2021,5,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2021,5,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2021,5,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2021,5,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2021,5,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2021,5,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2021,5,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2021,5,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2021,5,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2021,5,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2021,5,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,5,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,5,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,5,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2021,5,Syphilis,NAN,NAN,NAN,NAN +2021,5,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2021,5,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2021,5,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2021,5,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2021,5,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2021,5,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2021,5,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2021,5,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2021,5,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2021,5,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2021,5,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2021,5,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2021,5,Vibriosis,NAN,NAN,NAN,NAN +2021,5,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2021,5,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2021,5,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2021,5,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2021,5,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2021,5,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2021,5,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2021,5,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2021,5,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2021,5,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2021,5,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2021,5,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2021,5,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2021,5,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2021,5,Zika virus,NAN,NAN,NAN,NAN +2021,5,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2021,5,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2021,5,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2021,5,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2021,5,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,5,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,5,Hepatitis C,Hepatitis C,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,5,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN +2021,5,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,5,Probable †,NAN,NAN,NAN, +2021,4,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2021,4,Arboviral diseases,NAN,NAN,NAN,NAN +2021,4,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2021,4,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,4,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,4,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,4,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,4,La Crosse virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,4,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,4,Powassan virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,4,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,4,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,4,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,4,West Nile virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,4,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,4,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,4,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,4,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,4,Babesiosis,NAN,NAN,NAN,NAN +2021,4,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2021,4,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2021,4,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2021,4,Botulism,NAN,NAN,NAN,NAN +2021,4,Total,Botulism,Botulism,Botulism, +2021,4,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2021,4,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2021,4,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2021,4,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2021,4,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2021,4,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2021,4,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2021,4,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2021,4,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2021,4,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2021,4,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2021,4,Cryptosporidiosis,NAN,NAN,NAN,NAN +2021,4,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,4,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,4,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,4,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2021,4,Dengue virus infections §,NAN,NAN,NAN,NAN +2021,4,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2021,4,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2021,4,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2021,4,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2021,4,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2021,4,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2021,4,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2021,4,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2021,4,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2021,4,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2021,4,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2021,4,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2021,4,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,4,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2021,4,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2021,4,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2021,4,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2021,4,Hepatitis **,NAN,NAN,NAN,NAN +2021,4,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,4,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,4,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,4,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,4,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,4,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,4,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,4,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2021,4,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2021,4,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2021,4,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,4,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2021,4,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2021,4,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2021,4,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2021,4,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2021,4,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2021,4,Lyme disease,NAN,NAN,NAN,NAN +2021,4,Total,Lyme disease,Lyme disease,LymeDisease, +2021,4,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2021,4,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2021,4,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2021,4,Measles ¶¶,NAN,NAN,NAN,NAN +2021,4,Total,Measles,Measles,Measles,bio/DOID_8622 +2021,4,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2021,4,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2021,4,Meningococcal disease,NAN,NAN,NAN,NAN +2021,4,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,4,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,4,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,4,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,4,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,4,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2021,4,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2021,4,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2021,4,Plague,Plague,Plague,Plague,bio/DOID_3482 +2021,4,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2021,4,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2021,4,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2021,4,Q fever,NAN,NAN,NAN,NAN +2021,4,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2021,4,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2021,4,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2021,4,Rabies,NAN,NAN,NAN,NAN +2021,4,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2021,4,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2021,4,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2021,4,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2021,4,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2021,4,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2021,4,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2021,4,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2021,4,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2021,4,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2021,4,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2021,4,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,4,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,4,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,4,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2021,4,Syphilis,NAN,NAN,NAN,NAN +2021,4,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2021,4,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2021,4,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2021,4,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2021,4,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2021,4,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2021,4,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2021,4,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2021,4,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2021,4,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2021,4,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2021,4,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2021,4,Vibriosis,NAN,NAN,NAN,NAN +2021,4,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2021,4,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2021,4,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2021,4,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2021,4,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2021,4,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2021,4,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2021,4,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2021,4,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2021,4,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2021,4,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2021,4,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2021,4,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2021,4,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2021,4,Zika virus,NAN,NAN,NAN,NAN +2021,4,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2021,4,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2021,4,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2021,4,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2021,4,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,4,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,4,Hepatitis C,Hepatitis C,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,4,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN +2021,4,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,4,Probable †,NAN,NAN,NAN, +2021,6,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2021,6,Arboviral diseases,NAN,NAN,NAN,NAN +2021,6,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2021,6,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,6,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,6,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,6,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,6,La Crosse virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,6,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,6,Powassan virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,6,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,6,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,6,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,6,West Nile virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,6,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,6,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,6,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,6,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,6,Babesiosis,NAN,NAN,NAN,NAN +2021,6,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2021,6,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2021,6,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2021,6,Botulism,NAN,NAN,NAN,NAN +2021,6,Total,Botulism,Botulism,Botulism, +2021,6,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2021,6,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2021,6,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2021,6,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2021,6,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2021,6,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2021,6,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2021,6,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2021,6,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2021,6,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2021,6,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2021,6,Cryptosporidiosis,NAN,NAN,NAN,NAN +2021,6,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,6,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,6,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,6,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2021,6,Dengue virus infections §,NAN,NAN,NAN,NAN +2021,6,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2021,6,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2021,6,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2021,6,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2021,6,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2021,6,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2021,6,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2021,6,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2021,6,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2021,6,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2021,6,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2021,6,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2021,6,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,6,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2021,6,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2021,6,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2021,6,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2021,6,Hepatitis **,NAN,NAN,NAN,NAN +2021,6,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,6,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,6,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,6,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,6,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,6,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,6,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,6,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2021,6,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2021,6,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2021,6,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,6,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2021,6,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2021,6,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2021,6,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2021,6,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2021,6,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2021,6,Lyme disease,NAN,NAN,NAN,NAN +2021,6,Total,Lyme disease,Lyme disease,LymeDisease, +2021,6,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2021,6,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2021,6,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2021,6,Measles ¶¶,NAN,NAN,NAN,NAN +2021,6,Total,Measles,Measles,Measles,bio/DOID_8622 +2021,6,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2021,6,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2021,6,Meningococcal disease,NAN,NAN,NAN,NAN +2021,6,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,6,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,6,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,6,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,6,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,6,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2021,6,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2021,6,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2021,6,Plague,Plague,Plague,Plague,bio/DOID_3482 +2021,6,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2021,6,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2021,6,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2021,6,Q fever,NAN,NAN,NAN,NAN +2021,6,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2021,6,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2021,6,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2021,6,Rabies,NAN,NAN,NAN,NAN +2021,6,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2021,6,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2021,6,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2021,6,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2021,6,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2021,6,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2021,6,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2021,6,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2021,6,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2021,6,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2021,6,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2021,6,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,6,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,6,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,6,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2021,6,Syphilis,NAN,NAN,NAN,NAN +2021,6,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2021,6,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2021,6,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2021,6,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2021,6,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2021,6,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2021,6,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2021,6,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2021,6,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2021,6,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2021,6,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2021,6,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2021,6,Vibriosis,NAN,NAN,NAN,NAN +2021,6,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2021,6,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2021,6,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2021,6,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2021,6,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2021,6,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2021,6,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2021,6,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2021,6,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2021,6,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2021,6,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2021,6,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2021,6,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2021,6,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2021,6,Zika virus,NAN,NAN,NAN,NAN +2021,6,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2021,6,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2021,6,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2021,6,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2021,6,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,6,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,6,Hepatitis C,Hepatitis C,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,6,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN +2021,6,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,6,Probable †,NAN,NAN,NAN, +2021,7,Anthrax,Anthrax,Anthrax,AnthraxDisease,bio/DOID_7427 +2021,7,Arboviral diseases,NAN,NAN,NAN,NAN +2021,7,Chikungunya virus disease,Chikungunya virus disease,Chikungunya virus disease,Chikungunya,bio/DOID_0050012 +2021,7,Eastern equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,Eastern equine encephalitis;Neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,7,Non-neuroinvasive,Eastern equine encephalitis;Non-neuroinvasive,Eastern equine encephalitis virus disease,EasternEquineEncephalitis,bio/DOID_10841 +2021,7,Jamestown Canyon virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,Jamestown Canyon virus diseases;Neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,7,Non-neuroinvasive,Jamestown Canyon virus diseases;Non-neuroinvasive,Jamestown Canyon virus disease,JamestownCanyonVirusDisease, +2021,7,La Crosse virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,La Crosse virus disease;Neuroinvasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,7,Non-neuroinvasive,La Crosse virus disease;Non-neurovasive,La Crosse virus disease,LaCrosseVirusDisease,bio/DOID_0050118 +2021,7,Powassan virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,Powassan virus disease;Neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,7,Non-neuroinvasive,Powassan virus disease;Non-neuroinvasive,Powassan virus disease,PowassanVirusDisease,bio/DOID_0050179 +2021,7,St. Louis encephalitis virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,St. Louis encephalitis virus disease;Neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,7,Non-neuroinvasive,St. Louis encephalitis virus disease;Non-neuroinvasive,St. Louis encephalitis virus disease,StLouisEncephalitis,bio/DOID_10845 +2021,7,West Nile virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,West Nile virus disease;Neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,7,Non-neuroinvasive,West Nile virus disease;Non-neuroinvasive,West Nile virus disease,WestNileVirusDisease,bio/DOID_2366 +2021,7,Western equine encephalitis virus disease,NAN,NAN,NAN,NAN +2021,7,Neuroinvasive,Western equine encephalitis virus disease;Neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,7,Non-neuroinvasive,Western equine encephalitis virus disease;Non-neuroinvasive,Western equine encephalitis virus disease,WesternEquineEncephalitis,bio/DOID_10843 +2021,7,Babesiosis,NAN,NAN,NAN,NAN +2021,7,Total,Babesiosis,Babesiosis,Babesiosis,bio/DOID_9643 +2021,7,Confirmed,Babesiosis;Confirmed,Babesiosis,Babesiosis,bio/DOID_9643 +2021,7,Probable,Babesiosis;Probable,Babesiosis,Babesiosis,bio/DOID_9643 +2021,7,Botulism,NAN,NAN,NAN,NAN +2021,7,Total,Botulism,Botulism,Botulism, +2021,7,Foodborne,Foodborne Botulism,Foodborne Botulism,FoodborneBotulism,bio/DOID_0050352 +2021,7,Infant,Infant Botulism,Infant Botulism,InfantBotulism,bio/DOID_0050354 +2021,7,Other (wound & unspecified),Other wound & unspecified Botulism,Other wound & unspecified Botulism,WoundBotulism,bio/DOID_0050353 +2021,7,Brucellosis,Brucellosis,Brucellosis,Brucellosis,bio/DOID_11077 +2021,7,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,Campylobacteriosis,bio/DOID_13622 +2021,7,"Candida auris , clinical *",Candida auris;clinical,Candida auris,CandidaAuris, +2021,7,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenemase-producing carbapenem-resistant Enterobacteriaceae,Carbapenem Resistant Enterobacteriaceae,CarbapenemResistantEnterobacteriaceae, +2021,7,Chancroid,Chancroid,Chancroid,Chancroid,bio/DOID_13778 +2021,7,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia trachomatis infection,Chlamydia,bio/DOID_11263 +2021,7,Cholera,Cholera,cholera,Cholera,bio/DOID_1498 +2021,7,Coccidioidomycosis †,Coccidioidomycosis,Coccidioidomycosis,Coccidioidomycosis,bio/DOID_13450 +2021,7,Cryptosporidiosis,NAN,NAN,NAN,NAN +2021,7,Total,Cryptosporidiosis,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,7,Confirmed,Cryptosporidiosis;Confirmed,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,7,Probable,Cryptosporidiosis;Probable,Cryptosporidiosis,Cryptosporidiosis,bio/DOID_1733 +2021,7,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,Cyclosporiasis,bio/DOID_12750 +2021,7,Dengue virus infections §,NAN,NAN,NAN,NAN +2021,7,Dengue,Dengue,dengue fever,DengueDisease,bio/DOID_12205 +2021,7,Dengue-like illness,Dengue-like illness,Dengue-like illness,DengueLikeIllness, +2021,7,Severe dengue,Severe dengue,Severe dengue,SevereDengue,bio/DOID_12206;bio/DOID_0050125 +2021,7,Diphtheria,Diphtheria,Diphtheria,Diphtheria, +2021,7,Ehrlichiosis and Anaplasmosis,NAN,NAN,NAN,NAN +2021,7,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,Anaplasma phagocytophilum infection,HumanGranulocyticAnaplasmosis,bio/DOID_0050025 +2021,7,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis infection,Ehrlichia chaffeensis,HumanMonocyticEhrlichiosis,bio/DOID_0050026 +2021,7,Ehrlichia ewingii infection,Ehrlichia ewingii infection,Ehrlichia ewingii infection,EhrlichiaEwingiiInfection, +2021,7,Undetermined ehrlichiosis/anaplasmosis,Undetermined ehrlichiosis/anaplasmosis,UndeterminedEhrlichiosis/Anaplasmosis,Ehrlichiosis,bio/DOID_10242 +2021,7,Giardiasis,Giardiasis,Giardiasis,Giardiasis,bio/DOID_10718 +2021,7,Gonorrhea,Gonorrhea,Gonorrhea,Gonorrhea,bio/DOID_7551 +2021,7,"Haemophilus influenzae, invasive disease",NAN,NAN,NAN,NAN +2021,7,"All ages, all serotypes",Haemophilus influenzae;invasive disease;All ages;all serotypes,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Age <5 years,Haemophilus influenzae;invasive disease;Age <5 years,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Serotype b,Haemophilus influenzae;invasive disease;Age <5 years;Serotype b,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Non-b serotype,Haemophilus influenzae;invasive disease;Age <5 years;Non-b serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Nontypeable,Haemophilus influenzae;invasive disease;Age <5 years;Nontypeable,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Unknown serotype,Haemophilus influenzae;invasive disease;Age <5 years;Unknown serotype,Haemophilus influenzae,HaemophilusInfluenzae, +2021,7,Hansen's disease,Leprosy,Leprosy,Leprosy,bio/DOID_1024 +2021,7,"Hantavirus infection, non-hantavirus pulmonary syndrome ¶",Non-hantavirus pulmonary syndrome,Non-hantavirus pulmonary syndrome,HaemophilusMeningitis,bio/DOID_0080179 +2021,7,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,Hantavirus pulmonary syndrome,HantavirusPulmonarySyndrome,bio/DOID_14472 +2021,7,Hemolytic uremic syndrome post-diarrheal,Hemolytic uremic syndrome;post-diarrheal,Hemolytic uremic syndrome,HemolyticUremicSyndrome,bio/DOID_12554 +2021,7,Hepatitis **,NAN,NAN,NAN,NAN +2021,7,"A, acute",Hepatitis A;Acute,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,7,"B, acute",Hepatitis B;Acute,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,7,"B, perinatal infection",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,7,"C, acute",Hepatitis C;Acute,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,7,Confirmed,Hepatitis C;Acute;Confirmed,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,7,Probable,Hepatitis C;Acute;Probable,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,7,"C, perinatal infection",Hepatitis C;Perinatal infection,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,7,Human immunodeficiency virus diagnoses,HIV/Acquired Immune Deficiency Syndrome,HIV/Acquired Immune Deficiency Syndrome,HIV_AIDS, +2021,7,Influenza-associated pediatric mortality,Influenza;pediatric mortality,Influenza,Influenza,bio/DOID_8469 +2021,7,Invasive pneumococcal disease ††,NAN,NAN,NAN,NAN +2021,7,All ages,Invasive pneumococcal disease;All ages,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Confirmed,Invasive pneumococcal disease;All ages;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Probable,Invasive pneumococcal disease;All ages;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Age <5 years,Invasive pneumococcal disease;Age <5 years,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Confirmed,Invasive pneumococcal disease;Age <5 years;Confirmed,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Probable,Invasive pneumococcal disease;Age <5 years;Probable,pneumococcal disease,StreptococcusPneumonia,bio/DOID_0040084 +2021,7,Legionellosis §§,LegionnairesDisease,Legionellosis,LegionnairesDisease,bio/DOID_10457 +2021,7,Leptospirosis,Leptospirosis,Leptospirosis,Leptospirosis,bio/DOID_2297 +2021,7,Listeriosis ¶¶,NAN,NAN,NAN,NAN +2021,7,Total,Listeriosis,Listeriosis,Listeriosis,bio/DOID_11573 +2021,7,Confirmed,Listeriosis;Confirmed,Listeriosis,Listeriosis,bio/DOID_11573 +2021,7,Probable,Listeriosis;Probable,Listeriosis,Listeriosis,bio/DOID_11573 +2021,7,Lyme disease,NAN,NAN,NAN,NAN +2021,7,Total,Lyme disease,Lyme disease,LymeDisease, +2021,7,Confirmed,Lyme disease;Confirmed,Lyme disease,LymeDisease, +2021,7,Probable,Lyme disease;Probable,Lyme disease,LymeDisease, +2021,7,Malaria,Malaria,Malaria,Malaria,bio/DOID_12365 +2021,7,Measles ¶¶,NAN,NAN,NAN,NAN +2021,7,Total,Measles,Measles,Measles,bio/DOID_8622 +2021,7,Indigenous,Measles;Indigenous,Measles,Measles,bio/DOID_8622 +2021,7,Imported,Measles;Imported,Measles,Measles,bio/DOID_8622 +2021,7,Meningococcal disease,NAN,NAN,NAN,NAN +2021,7,All serogroups,Meningococcal disease;All serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,7,Serogroups ACWY,Meningococcal disease;Serogroups ACWY,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,7,Serogroup B,Meningococcal disease;Serogroup B,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,7,Other serogroups,Meningococcal disease;Other serogroups,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,7,Unknown serogroup,Meningococcal disease;Unknown serogroup,Meningococcal disease,MeningococcalMeningitis,bio/DOID_0080176 +2021,7,Mumps,Mumps,Mumps,Mumps,bio/DOID_10264 +2021,7,Novel Influenza A virus infections,Novel Influenza A virus infections,Novel Influenza A virus infections,NovelInfluenzaAViralInfection, +2021,7,Pertussis,Pertussis,Pertussis,Pertussis,bio/DOID_1116 +2021,7,Plague,Plague,Plague,Plague,bio/DOID_3482 +2021,7,"Poliomyelitis, paralytic",Paralytic poliomyelitis,Paralytic poliomyelitis,ParalyticPoliomyelitis,bio/DOID_0050515 +2021,7,"Poliovirus infection, nonparalytic",Nonparalytic poliomyelitis,Nonparalytic poliomyelitis,NonparalyticPoliomyelitis,bio/DOID_4986 +2021,7,Psittacosis,Psittacosis,Psittacosis,Psittacosis,bio/DOID_11262 +2021,7,Q fever,NAN,NAN,NAN,NAN +2021,7,Total,Q fever,Q fever,QFever,bio/DOID_11100 +2021,7,Acute,Q fever;Acute,Q fever,QFever,bio/DOID_11100 +2021,7,Chronic,Q fever;Chronic,Q fever,QFever,bio/DOID_11100 +2021,7,Rabies,NAN,NAN,NAN,NAN +2021,7,Human,Rabies,Rabies,Rabiesinhuman,bio/DOID_11260 +2021,7,Rubella,Rubella,Rubella,Rubella,bio/DOID_8781 +2021,7,"Rubella, congenital syndrome",Rubella;congenital,Rubella,Rubella,bio/DOID_8781 +2021,7,Salmonella Paratyphi infection ***,Paratyphoid,Paratyphoid,Paratyphoid, +2021,7,Salmonella Typhi infection †††,Typhoid fever,Typhoid,TyphoidFever, +2021,7,Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) §§§,Salmonellosis,Salmonellosis,SalmonellosisExceptTyphiAndParatyphi, +2021,7,Severe acute respiratory syndrome-associated coronavirus disease,COVID19,COVID19,COVID19,bio/DOID_0080600;COVID_19 +2021,7,Shiga toxin-producing Escherichia coli (STEC),Shiga toxin-producing Escherichia coli,Shiga toxin-producing Escherichia Coli,ShigaToxinEColi, +2021,7,Shigellosis,Shigellosis,Shigellosis,Shigellosis,bio/DOID_12385 +2021,7,Smallpox,Smallpox,Smallpox,Smallpox,bio/DOID_8736 +2021,7,Spotted fever rickettsiosis,NAN,NAN,NAN,NAN +2021,7,Total,Spotted fever rickettsiosis,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,7,Confirmed,Spotted fever rickettsiosis;Confirmed,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,7,Probable,Spotted fever rickettsiosis;Probable,Spotted fever rickettsiosis,SpottedFeverRickettsiosis, +2021,7,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,Streptococcal toxic shock syndrome,StreptococcalToxicShockSyndrome, +2021,7,Syphilis,NAN,NAN,NAN,NAN +2021,7,"Total, all stages ¶¶¶",Syphilis,Syphilis,Syphilis, +2021,7,Congenital §§§§,Congenital Syphilis,congenital syphilis,CongenitalSyphilis,bio/DOID_9856 +2021,7,Primary and secondary,Syphilis primary and secondary,Syphilis primary and secondary,SyphilisPrimaryAndSecondary, +2021,7,Tetanus,Tetanus,Tetanus,Tetanus,bio/DOID_11338 +2021,7,Toxic shock syndrome (other than Streptococcal),Other toxic shock syndrome,ToxicShockSyndromExceptStreptococcal,ToxicShockSyndromExceptStreptococcal, +2021,7,Trichinellosis,Trichinellosis,Trichinellosis,Trichinellosis,bio/DOID_9784 +2021,7,Tuberculosis,Tuberculosis,Tuberculosis,Tuberculosis,bio/DOID_399 +2021,7,Tularemia,Tularemia,Tularemia,Tularemia,bio/DOID_2123 +2021,7,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,Vancomycin-intermediate Staphylococcus aureus,VancomycinIntermediateStaphylococcusAureus, +2021,7,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,Vancomycin-resistant Staphylococcus aureus,VancomycinResistantStaphylococcusAureus, +2021,7,Varicella morbidity,Chickenpox,Chickenpox,Chickenpox,bio/DOID_8659 +2021,7,Varicella mortality,Chickenpox;Deaths,Chickenpox,Chickenpox,bio/DOID_8659 +2021,7,Vibriosis,NAN,NAN,NAN,NAN +2021,7,Total,Vibriosis,Vibriosis except cholera,VibriosisExcludingCholera, +2021,7,Confirmed,Vibriosis except cholera;Confirmed,Vibriosis except cholera,VibriosisExcludingCholera, +2021,7,Probable,Vibriosis except cholera;Probable,Vibriosis except cholera,VibriosisExcludingCholera, +2021,7,Viral hemorrhagic fevers,NAN,NAN,NAN,NAN +2021,7,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,Crimean-Congo hemorrhagic fever virus,CrimeanCongoHemorrhagicFever,bio/DOID_12287 +2021,7,Ebola virus,Ebola virus,Ebola virus,EbolaHemorrhagicFever,bio/DOID_4325 +2021,7,Guanarito virus,Guanarito virus,Guanarito virus,GuanaritoHemorrhagicFever, +2021,7,Junin virus,Junin virus,Junin virus,JuninHemorrhagicFever, +2021,7,Lassa virus,Lassa virus,Lassa virus,LassaHemorrhagicFever, +2021,7,Lujo virus,Lujo virus,Lujo virus,LujoHemorrhagicFever,bio/DOID_0050202 +2021,7,Machupo virus,Machupo virus,Machupo virus,MachupoHemorrhagicFever, +2021,7,Marburg virus,Marburg virus,Marburg virus,MarburgHemorrhagicFever,bio/DOID_4327 +2021,7,Sabia virus,Sabia virus,Sabia virus,SabiaHemorrhagicFever, +2021,7,Yellow fever,Yellow fever,Yellow fever,YellowFever,bio/DOID_9682 +2021,7,Zika virus,NAN,NAN,NAN,NAN +2021,7,"Zika virus disease, congenital ****",NAN,NAN,NAN,NAN +2021,7,"Zika virus disease, non-congenital",Zika fever;non-congenital,Zika fever,ZikaVirusDisease,bio/DOID_0060478 +2021,7,"Zika virus infection, congenital ****",NAN,NAN,NAN,NAN +2021,7,"Zika virus infection, non-congenital",Zika virus infection;non-congenital,Zika virus infection,ZikaVirusInfection, +2021,7,Hepatitis A,Hepatitis A,Hepatitis A,HepatitisA,bio/DOID_12547 +2021,7,Hepatitis B,Hepatitis B,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,7,Hepatitis C,Hepatitis C,Hepatitis C,HepatitisC,bio/DOID_1883 +2021,7,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN +2021,7,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 +2021,7,Probable †,NAN,NAN,NAN, + From 9ac606be5996802818ab51ddaaac12a72ba353df Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Mon, 4 Nov 2024 11:36:44 +0000 Subject: [PATCH 4/7] CDCWonder_NNDSS_InfectiousAnnual_changes --- .../us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv | 1 - 1 file changed, 1 deletion(-) diff --git a/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv index 3476b1839b..528cec6943 100644 --- a/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv +++ b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv @@ -3971,4 +3971,3 @@ year,table,Disease,Replacement,name,dcid,sameAs 2021,7,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN 2021,7,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 2021,7,Probable †,NAN,NAN,NAN, - From e66fb25a9292dd397a3b56d51a0bcf7ad30356b1 Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Mon, 4 Nov 2024 11:53:03 +0000 Subject: [PATCH 5/7] CDCWonder_NNDSS_InfectiousAnnual_changes --- .../us_cdc/nndss_annual_tables/process_annual_demographics.py | 4 ---- 1 file changed, 4 deletions(-) diff --git a/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py index ff4bfe8a26..6991fa119c 100644 --- a/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py +++ b/scripts/us_cdc/nndss_annual_tables/process_annual_demographics.py @@ -201,10 +201,6 @@ def clean_single_dataframe(df, year, table): diseases_map = diseases_map.drop_duplicates(keep='first') diseases_map = diseases_map[diseases_map['Replacement'] != 'NAN'] diseases_map = diseases_map.dropna(subset=['name', 'dcid']) - print("table------", table) - print("year------", year) - if int(table) == 4 and int(year) == 2021: - print("dcid--------------", diseases_map['dcid']) diseases_map['variable'] = diseases_map['Replacement'] + ';' + diseases_map[ 'variable'] diseases_map = diseases_map.drop( From ffee172be13ef870a243c25af00ad1371920330f Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Mon, 23 Dec 2024 10:59:25 +0000 Subject: [PATCH 6/7] CDCWonder_NNDSS_InfectiousAnnual_changes --- .../annual_tables_disease_mapping.csv | 1 + .../download_annual_data.py | 25 +++++++++---------- 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv index 528cec6943..3476b1839b 100644 --- a/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv +++ b/scripts/us_cdc/nndss_annual_tables/annual_tables_disease_mapping.csv @@ -3971,3 +3971,4 @@ year,table,Disease,Replacement,name,dcid,sameAs 2021,7,Coronavirus Disease 2019 (COVID-19),NAN,NAN,NAN,NAN 2021,7,"B, perinatal infection ††",Hepatitis B;Perinatal infection,Hepatitis B,HepatitisB,bio/DOID_2043 2021,7,Probable †,NAN,NAN,NAN, + diff --git a/scripts/us_cdc/nndss_annual_tables/download_annual_data.py b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py index b6c9dffea7..29bb589a39 100644 --- a/scripts/us_cdc/nndss_annual_tables/download_annual_data.py +++ b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py @@ -21,13 +21,16 @@ from absl import flags, app from bs4 import BeautifulSoup -_START = 2016 -_END = 2022 #to make the last year inclusive, add +1 to last year. Here 2019 + 1 = 2020 - _BASE_URL = "https://wonder.cdc.gov/nndss/" _FILENAME_TEMPLATE = "mmwr_year_{year}_mmwr_table_{id}" _BAD_URLS = [] - +_FLAGS = flags.FLAGS +flags.DEFINE_string( + 'output_path', './data', + 'Path to the directory where generated files are to be stored.') +flags.DEFINE_string('start_year', '2016', 'Start year for downloading source files') +flags.DEFINE_string('end_year', '', 'End year for downloading source files') +flags.mark_flag_as_required("end_year") def parse_html_table(table_url: str, file_path: str) -> None: if table_url not in _BAD_URLS: @@ -118,15 +121,11 @@ def download_annual_nnds_data_across_years(year_range: str, print(f"Fetching data from {index_url}") scrape_table_links_from_page(index_url, output_path, update=False) - -def main(_) -> None: - FLAGS = flags.FLAGS - flags.DEFINE_string( - 'output_path', './data', - 'Path to the directory where generated files are to be stored.') - year_range = range(_START, _END) - download_annual_nnds_data_across_years(year_range, FLAGS.output_path) - +def main(_) -> None: + start_year1 = _FLAGS.start_year + end_year1 = _FLAGS.end_year + year_range = range(int(start_year1), int(end_year1)) + download_annual_nnds_data_across_years(year_range, _FLAGS.output_path) if __name__ == '__main__': app.run(main) From fbefa5f551027c3d845afc91e27bdc97a7f79c36 Mon Sep 17 00:00:00 2001 From: Sudhisha K Date: Mon, 23 Dec 2024 11:05:36 +0000 Subject: [PATCH 7/7] CDCWonder_NNDSS_InfectiousAnnual_changes --- .../us_cdc/nndss_annual_tables/download_annual_data.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/scripts/us_cdc/nndss_annual_tables/download_annual_data.py b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py index 29bb589a39..f1afa7939f 100644 --- a/scripts/us_cdc/nndss_annual_tables/download_annual_data.py +++ b/scripts/us_cdc/nndss_annual_tables/download_annual_data.py @@ -28,10 +28,12 @@ flags.DEFINE_string( 'output_path', './data', 'Path to the directory where generated files are to be stored.') -flags.DEFINE_string('start_year', '2016', 'Start year for downloading source files') +flags.DEFINE_string('start_year', '2016', + 'Start year for downloading source files') flags.DEFINE_string('end_year', '', 'End year for downloading source files') flags.mark_flag_as_required("end_year") + def parse_html_table(table_url: str, file_path: str) -> None: if table_url not in _BAD_URLS: table_content = requests.get(table_url) @@ -121,11 +123,13 @@ def download_annual_nnds_data_across_years(year_range: str, print(f"Fetching data from {index_url}") scrape_table_links_from_page(index_url, output_path, update=False) -def main(_) -> None: + +def main(_) -> None: start_year1 = _FLAGS.start_year end_year1 = _FLAGS.end_year year_range = range(int(start_year1), int(end_year1)) download_annual_nnds_data_across_years(year_range, _FLAGS.output_path) + if __name__ == '__main__': app.run(main)