From bdfd24b0924b9de595f43fe94d4f05d4206a19d7 Mon Sep 17 00:00:00 2001
From: daniel-manrique <danielmanriquecastano@gmail.com>
Date: Mon, 11 Mar 2024 12:53:42 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20daniel-m?=
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MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
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 _pages/dropdown/index.html                     | 2 +-
 about_books/index.html                         | 2 +-
 assets/jupyter/blog.ipynb.html                 | 2 +-
 blog/2015/code/index.html                      | 2 +-
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 blog/2020/index.html                           | 2 +-
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 blog/2021/diagrams/index.html                  | 2 +-
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 cv/index.html                                  | 2 +-
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 teaching/index.html                            | 2 +-
 83 files changed, 83 insertions(+), 83 deletions(-)

diff --git a/404.html b/404.html
index 65944a4..b3ef404 100644
--- a/404.html
+++ b/404.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta http-equiv="refresh" content="3; url=/"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Page not found | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Looks like there has been a mistake. Nothing exists here."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/404.html"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Page not found</h1> <p class="post-description">Looks like there has been a mistake. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta http-equiv="refresh" content="3; url=/"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Page not found | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Looks like there has been a mistake. 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Nothing exists here.</p> </header> <article> <p>You will be redirected to the main page within 3 seconds. If not redirected, please go back to the <a href="https://daniel-manrique.github.io">home page</a>.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/_pages/dropdown/index.html b/_pages/dropdown/index.html
index 86a26cf..d49517d 100644
--- a/_pages/dropdown/index.html
+++ b/_pages/dropdown/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Others | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Others | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/about_books/index.html b/about_books/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Books | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Books I have published"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/about_books/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item active"> <a class="nav-link" href="/about_books/">Books <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown active"> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others <span class="sr-only">(current)</span> </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item active" href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Books</h1> <p class="post-description">Books I have published</p> </header> <article> <div class="post"> <article> <hr> <div class="profile float-right"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Fundamentos-480.webp 480w,/assets/img/Fundamentos-800.webp 800w,/assets/img/Fundamentos-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Fundamentos.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Fundamentos.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Editorial Almuzara</p> <p>Popular science book</p> </div> </div> <div class="clearfix"> <p>You can find a <a href="https://grupoalmuzara.com/libro/9788494471759_ficha.pdf" rel="external nofollow noopener" target="_blank">Summary</a> <strong>In Spanish</strong> and buy <a href="https://www.amazon.com/-/es/Daniel-Manrique-Casta%C3%B1o/dp/8494471759" rel="external nofollow noopener" target="_blank">Buy the book in Amazon</a>. Cosmology is the part of astronomy that deals with the origin and evolution of the universe. Discover its fundamentals on an interstellar voyage to the far reaches of the cosmos. Why is there something instead of nothing? What is the Theory of Everything? What was there before the Big Bang? Do we live in the Asteroid universe? Is the universe a house of mirrors? Was Einstein right about his cosmological constant? What is the singularity? What is the origin of the Cosmic Background Radiation? Do we live in a gigantic cosmic vacuum? Why is the detection of gravitational waves one of the greatest discoveries in science? Is the universe finite or infinite? What is the origin of the universe? Do we live in an infinite space-time? Will Einstein’s theory continue to be a pillar for cosmology in the future? These and many other questions are addressed in this book, dedicated to modern cosmology. A journey from the fundamental concepts of the study of the universe such as the speed of light, isotropy and homogeneity, gravitational waves, the particle horizon to the most current theories about the future of galaxies.</p> </div> </article> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Books | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Books I have published"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/about_books/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown active"> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others <span class="sr-only">(current)</span> </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item active" href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Books</h1> <p class="post-description">Books I have published</p> </header> <article> <div class="post"> <article> <hr> <div class="profile float-right"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Fundamentos-480.webp 480w,/assets/img/Fundamentos-800.webp 800w,/assets/img/Fundamentos-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Fundamentos.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Fundamentos.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Editorial Almuzara</p> <p>Popular science book</p> </div> </div> <div class="clearfix"> <p>You can find a <a href="https://grupoalmuzara.com/libro/9788494471759_ficha.pdf" rel="external nofollow noopener" target="_blank">Summary</a> <strong>In Spanish</strong> and buy <a href="https://www.amazon.com/-/es/Daniel-Manrique-Casta%C3%B1o/dp/8494471759" rel="external nofollow noopener" target="_blank">Buy the book in Amazon</a>. Cosmology is the part of astronomy that deals with the origin and evolution of the universe. Discover its fundamentals on an interstellar voyage to the far reaches of the cosmos. Why is there something instead of nothing? What is the Theory of Everything? What was there before the Big Bang? Do we live in the Asteroid universe? Is the universe a house of mirrors? Was Einstein right about his cosmological constant? What is the singularity? What is the origin of the Cosmic Background Radiation? Do we live in a gigantic cosmic vacuum? Why is the detection of gravitational waves one of the greatest discoveries in science? Is the universe finite or infinite? What is the origin of the universe? Do we live in an infinite space-time? Will Einstein’s theory continue to be a pillar for cosmology in the future? These and many other questions are addressed in this book, dedicated to modern cosmology. A journey from the fundamental concepts of the study of the universe such as the speed of light, isotropy and homogeneity, gravitational waves, the particle horizon to the most current theories about the future of galaxies.</p> </div> </article> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/blog/2015/code/index.html b/blog/2015/code/index.html
index ef1aa90..ff42bc1 100644
--- a/blog/2015/code/index.html
+++ b/blog/2015/code/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with code | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with some code"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2015/code/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with code</h1> <p class="post-meta"> July 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/code"> <i class="fa-solid fa-hashtag fa-sm"></i> code</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme implements a built-in Jekyll feature, the use of Rouge, for syntax highlighting. It supports more than 100 languages. This example is in C++. All you have to do is wrap your code in markdown code tags:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">c++
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with code | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with some code"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2015/code/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with code</h1> <p class="post-meta"> July 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/code"> <i class="fa-solid fa-hashtag fa-sm"></i> code</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme implements a built-in Jekyll feature, the use of Rouge, for syntax highlighting. It supports more than 100 languages. This example is in C++. All you have to do is wrap your code in markdown code tags:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">c++
 </span><span class="n">code</span> <span class="n">code</span> <span class="n">code</span>
 <span class="p">```</span>
 </code></pre></div></div> <div class="language-c++ highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="kt">int</span> <span class="nf">main</span><span class="p">(</span><span class="kt">int</span> <span class="n">argc</span><span class="p">,</span> <span class="kt">char</span> <span class="k">const</span> <span class="err">\</span><span class="o">*</span><span class="n">argv</span><span class="p">[])</span>
diff --git a/blog/2015/disqus-comments/index.html b/blog/2015/disqus-comments/index.html
index 68501c7..27b83da 100644
--- a/blog/2015/disqus-comments/index.html
+++ b/blog/2015/disqus-comments/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with disqus comments | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with disqus comments"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2015/disqus-comments/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with disqus comments</h1> <p class="post-meta"> October 20, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add DISQUS comments.</p> </div> </article> <div id="disqus_thread" style="max-width: 800px; margin: 0 auto;"> <script type="text/javascript">var disqus_shortname="al-folio",disqus_identifier="/blog/2015/disqus-comments",disqus_title="a post with disqus comments";!function(){var e=document.createElement("script");e.type="text/javascript",e.async=!0,e.src="//"+disqus_shortname+".disqus.com/embed.js",(document.getElementsByTagName("head")[0]||document.getElementsByTagName("body")[0]).appendChild(e)}();</script> <noscript>Please enable JavaScript to view the <a href="http://disqus.com/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by Disqus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with disqus comments | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with disqus comments"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with formatting and links | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="march &amp; april, looking forward to summer"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2015/formatting-and-links/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with formatting and links</h1> <p class="post-meta"> March 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/links"> <i class="fa-solid fa-hashtag fa-sm"></i> links</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h4 id="hipster-list">Hipster list</h4> <ul> <li>brunch</li> <li>fixie</li> <li>raybans</li> <li>messenger bag</li> </ul> <h4 id="check-list">Check List</h4> <ul class="task-list"> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Brush Teeth</li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled>Put on socks <ul class="task-list"> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Put on left sock</li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled>Put on right sock</li> </ul> </li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Go to school</li> </ul> <p>Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90’s yr typewriter selfies letterpress cardigan vegan.</p> <hr> <p>Pug heirloom High Life vinyl swag, single-origin coffee four dollar toast taxidermy reprehenderit fap distillery master cleanse locavore. Est anim sapiente leggings Brooklyn ea. Thundercats locavore excepteur veniam eiusmod. Raw denim Truffaut Schlitz, migas sapiente Portland VHS twee Bushwick Marfa typewriter retro id keytar.</p> <blockquote> <p>We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another. —Anais Nin</p> </blockquote> <p>Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.</p> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/table-of-contents/">a post with table of contents</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2022/redirect/">a post with redirect</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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<button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with formatting and links</h1> <p class="post-meta"> March 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/links"> <i class="fa-solid fa-hashtag fa-sm"></i> links</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h4 id="hipster-list">Hipster list</h4> <ul> <li>brunch</li> <li>fixie</li> <li>raybans</li> <li>messenger bag</li> </ul> <h4 id="check-list">Check List</h4> <ul class="task-list"> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Brush Teeth</li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled>Put on socks <ul class="task-list"> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Put on left sock</li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled>Put on right sock</li> </ul> </li> <li class="task-list-item"> <input type="checkbox" class="task-list-item-checkbox" disabled checked>Go to school</li> </ul> <p>Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90’s yr typewriter selfies letterpress cardigan vegan.</p> <hr> <p>Pug heirloom High Life vinyl swag, single-origin coffee four dollar toast taxidermy reprehenderit fap distillery master cleanse locavore. Est anim sapiente leggings Brooklyn ea. Thundercats locavore excepteur veniam eiusmod. Raw denim Truffaut Schlitz, migas sapiente Portland VHS twee Bushwick Marfa typewriter retro id keytar.</p> <blockquote> <p>We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another. —Anais Nin</p> </blockquote> <p>Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.</p> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/table-of-contents/">a post with table of contents</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2022/redirect/">a post with redirect</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with images | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included images could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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</li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with images</h1> <p class="post-meta"> May 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/images"> <i class="fa-solid fa-hashtag fa-sm"></i> images</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with image galleries.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/9-480.webp 480w,/assets/img/9-800.webp 800w,/assets/img/9-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/9.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between image rows, after each row, or doesn't have to be there at all. </div> <p>Images can be made zoomable. Simply add <code class="language-plaintext highlighter-rouge">data-zoomable</code> to <code class="language-plaintext highlighter-rouge">&lt;img&gt;</code> tags that you want to make zoomable.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/8-480.webp 480w,/assets/img/8-800.webp 800w,/assets/img/8-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/8.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/10-480.webp 480w,/assets/img/10-800.webp 800w,/assets/img/10-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/10.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <p>The rest of the images in this post are all zoomable, arranged into different mini-galleries.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/11-480.webp 480w,/assets/img/11-800.webp 800w,/assets/img/11-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/11.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/12-480.webp 480w,/assets/img/12-800.webp 800w,/assets/img/12-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/12.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/audios/">a post with audios</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/disqus-comments/">a post with disqus comments</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with images | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included images could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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</li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with images</h1> <p class="post-meta"> May 15, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/images"> <i class="fa-solid fa-hashtag fa-sm"></i> images</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with image galleries.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/9-480.webp 480w,/assets/img/9-800.webp 800w,/assets/img/9-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/9.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between image rows, after each row, or doesn't have to be there at all. </div> <p>Images can be made zoomable. Simply add <code class="language-plaintext highlighter-rouge">data-zoomable</code> to <code class="language-plaintext highlighter-rouge">&lt;img&gt;</code> tags that you want to make zoomable.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/8-480.webp 480w,/assets/img/8-800.webp 800w,/assets/img/8-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/8.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/10-480.webp 480w,/assets/img/10-800.webp 800w,/assets/img/10-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/10.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <p>The rest of the images in this post are all zoomable, arranged into different mini-galleries.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/11-480.webp 480w,/assets/img/11-800.webp 800w,/assets/img/11-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/11.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/12-480.webp 480w,/assets/img/12-800.webp 800w,/assets/img/12-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/12.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" data-zoomable="" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/audios/">a post with audios</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/disqus-comments/">a post with disqus comments</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> 2015 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/blog/2015/math/index.html b/blog/2015/math/index.html
index bd9b837..8b2583f 100644
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+++ b/blog/2015/math/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with math | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with some math"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2015/math/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with math</h1> <p class="post-meta"> October 20, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/math"> <i class="fa-solid fa-hashtag fa-sm"></i> math</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme supports rendering beautiful math in inline and display modes using <a href="https://www.mathjax.org/" rel="external nofollow noopener" target="_blank">MathJax 3</a> engine. You just need to surround your math expression with <code class="language-plaintext highlighter-rouge">$$</code>, like <code class="language-plaintext highlighter-rouge">$$ E = mc^2 $$</code>. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).</p> <p>To use display mode, again surround your expression with <code class="language-plaintext highlighter-rouge">$$</code> and place it as a separate paragraph. Here is an example:</p> \[\sum_{k=1}^\infty |\langle x, e_k \rangle|^2 \leq \|x\|^2\] <p>You can also use <code class="language-plaintext highlighter-rouge">\begin{equation}...\end{equation}</code> instead of <code class="language-plaintext highlighter-rouge">$$</code> for display mode math. MathJax will automatically number equations:</p> <p>\begin{equation} \label{eq:cauchy-schwarz} \left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2 \right) \left( \sum_{k=1}^n b_k^2 \right) \end{equation}</p> <p>and by adding <code class="language-plaintext highlighter-rouge">\label{...}</code> inside the equation environment, we can now refer to the equation using <code class="language-plaintext highlighter-rouge">\eqref</code>.</p> <p>Note that MathJax 3 is <a href="https://docs.mathjax.org/en/latest/upgrading/whats-new-3.0.html" rel="external nofollow noopener" target="_blank">a major re-write of MathJax</a> that brought a significant improvement to the loading and rendering speed, which is now <a href="http://www.intmath.com/cg5/katex-mathjax-comparison.php" rel="external nofollow noopener" target="_blank">on par with KaTeX</a>.</p> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with math | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with some math"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with math</h1> <p class="post-meta"> October 20, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/math"> <i class="fa-solid fa-hashtag fa-sm"></i> math</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme supports rendering beautiful math in inline and display modes using <a href="https://www.mathjax.org/" rel="external nofollow noopener" target="_blank">MathJax 3</a> engine. You just need to surround your math expression with <code class="language-plaintext highlighter-rouge">$$</code>, like <code class="language-plaintext highlighter-rouge">$$ E = mc^2 $$</code>. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).</p> <p>To use display mode, again surround your expression with <code class="language-plaintext highlighter-rouge">$$</code> and place it as a separate paragraph. Here is an example:</p> \[\sum_{k=1}^\infty |\langle x, e_k \rangle|^2 \leq \|x\|^2\] <p>You can also use <code class="language-plaintext highlighter-rouge">\begin{equation}...\end{equation}</code> instead of <code class="language-plaintext highlighter-rouge">$$</code> for display mode math. MathJax will automatically number equations:</p> <p>\begin{equation} \label{eq:cauchy-schwarz} \left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2 \right) \left( \sum_{k=1}^n b_k^2 \right) \end{equation}</p> <p>and by adding <code class="language-plaintext highlighter-rouge">\label{...}</code> inside the equation environment, we can now refer to the equation using <code class="language-plaintext highlighter-rouge">\eqref</code>.</p> <p>Note that MathJax 3 is <a href="https://docs.mathjax.org/en/latest/upgrading/whats-new-3.0.html" rel="external nofollow noopener" target="_blank">a major re-write of MathJax</a> that brought a significant improvement to the loading and rendering speed, which is now <a href="http://www.intmath.com/cg5/katex-mathjax-comparison.php" rel="external nofollow noopener" target="_blank">on par with KaTeX</a>.</p> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with github metadata | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a quick run down on accessing github metadata."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" 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id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with github metadata</h1> <p class="post-meta"> September 28, 2020 </p> <p class="post-tags"> <a href="/blog/2020"> <i class="fa-solid fa-calendar fa-sm"></i> 2020 </a>   ·   <a href="/blog/tag/metadata"> <i class="fa-solid fa-hashtag fa-sm"></i> metadata</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>A sample blog page that demonstrates the accessing of github meta data.</p> <h2 id="what-does-github-metadata-do">What does Github-MetaData do?</h2> <ul> <li>Propagates the site.github namespace with repository metadata</li> <li>Setting site variables : <ul> <li>site.title</li> <li>site.description</li> <li>site.url</li> <li>site.baseurl</li> </ul> </li> <li>Accessing the metadata - duh.</li> <li>Generating edittable links.</li> </ul> <h2 id="additional-reading">Additional Reading</h2> <ul> <li>If you’re recieving incorrect/missing data, you may need to perform a Github API<a href="https://github.com/jekyll/github-metadata/blob/master/docs/authentication.md" rel="external nofollow noopener" target="_blank"> authentication</a>.</li> <li>Go through this <a href="https://jekyll.github.io/github-metadata/" rel="external nofollow noopener" target="_blank">README</a> for more details on the topic.</li> <li> <a href="https://github.com/jekyll/github-metadata/blob/master/docs/site.github.md" rel="external nofollow noopener" target="_blank">This page</a> highlights all the feilds you can access with github-metadata. <br> </li> </ul> <h2 id="example-metadata">Example MetaData</h2> <ul> <li>Host Name :</li> <li>URL :</li> <li>BaseURL :</li> <li>Archived :</li> <li>Contributors :</li> </ul> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2020/twitter/">a post with twitter</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/code/">a post with code</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/echarts/">a post with echarts</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/code-diff/">a post with code diff</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with github metadata | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a quick run down on accessing github metadata."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" 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<button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with github metadata</h1> <p class="post-meta"> September 28, 2020 </p> <p class="post-tags"> <a href="/blog/2020"> <i class="fa-solid fa-calendar fa-sm"></i> 2020 </a>   ·   <a href="/blog/tag/metadata"> <i class="fa-solid fa-hashtag fa-sm"></i> metadata</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>A sample blog page that demonstrates the accessing of github meta data.</p> <h2 id="what-does-github-metadata-do">What does Github-MetaData do?</h2> <ul> <li>Propagates the site.github namespace with repository metadata</li> <li>Setting site variables : <ul> <li>site.title</li> <li>site.description</li> <li>site.url</li> <li>site.baseurl</li> </ul> </li> <li>Accessing the metadata - duh.</li> <li>Generating edittable links.</li> </ul> <h2 id="additional-reading">Additional Reading</h2> <ul> <li>If you’re recieving incorrect/missing data, you may need to perform a Github API<a href="https://github.com/jekyll/github-metadata/blob/master/docs/authentication.md" rel="external nofollow noopener" target="_blank"> authentication</a>.</li> <li>Go through this <a href="https://jekyll.github.io/github-metadata/" rel="external nofollow noopener" target="_blank">README</a> for more details on the topic.</li> <li> <a href="https://github.com/jekyll/github-metadata/blob/master/docs/site.github.md" rel="external nofollow noopener" target="_blank">This page</a> highlights all the feilds you can access with github-metadata. <br> </li> </ul> <h2 id="example-metadata">Example MetaData</h2> <ul> <li>Host Name :</li> <li>URL :</li> <li>BaseURL :</li> <li>Archived :</li> <li>Contributors :</li> </ul> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2020/twitter/">a post with twitter</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/code/">a post with code</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/echarts/">a post with echarts</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/code-diff/">a post with code diff</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/blog/2020/twitter/index.html b/blog/2020/twitter/index.html
index 147703e..0d45796 100644
--- a/blog/2020/twitter/index.html
+++ b/blog/2020/twitter/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with twitter | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with twitter"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2020/twitter/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with twitter</h1> <p class="post-meta"> September 28, 2020 </p> <p class="post-tags"> <a href="/blog/2020"> <i class="fa-solid fa-calendar fa-sm"></i> 2020 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>A sample blog page that demonstrates the inclusion of Tweets/Timelines/etc.</p> <h1 id="tweet">Tweet</h1> <p>An example of displaying a tweet:</p> <div class="jekyll-twitter-plugin"> <blockquote class="twitter-tweet"> <p lang="sv" dir="ltr">jekyll-twitter-plugin (1.0.0): A Liquid tag plugin for Jekyll that renders Tweets from Twitter API <a href="http://t.co/m4EIQPM9h4" rel="external nofollow noopener" target="_blank">http://t.co/m4EIQPM9h4</a></p>— RubyGems (@rubygems) <a href="https://twitter.com/rubygems/status/518821243320287232?ref_src=twsrc%5Etfw" rel="external nofollow noopener" target="_blank">October 5, 2014</a> </blockquote> <script async="" src="https://platform.twitter.com/widgets.js" charset="utf-8"></script> </div> <h1 id="timeline">Timeline</h1> <p>An example of pulling from a timeline:</p> <div class="jekyll-twitter-plugin"> <a class="twitter-timeline" data-width="500" data-tweet-limit="3" href="https://twitter.com/jekyllrb?ref_src=twsrc%5Etfw" rel="external nofollow noopener" target="_blank">Tweets by jekyllrb</a> <script async="" src="https://platform.twitter.com/widgets.js" charset="utf-8"></script> </div> <h1 id="additional-details">Additional Details</h1> <p>For more details on using the plugin visit: <a href="https://github.com/rob-murray/jekyll-twitter-plugin" rel="external nofollow noopener" target="_blank">jekyll-twitter-plugin</a></p> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2020/github-metadata/">a post with github metadata</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/code/">a post with code</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with twitter | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with twitter"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2020/twitter/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with twitter</h1> <p class="post-meta"> September 28, 2020 </p> <p class="post-tags"> <a href="/blog/2020"> <i class="fa-solid fa-calendar fa-sm"></i> 2020 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>A sample blog page that demonstrates the inclusion of Tweets/Timelines/etc.</p> <h1 id="tweet">Tweet</h1> <p>An example of displaying a tweet:</p> <div class="jekyll-twitter-plugin"> <blockquote class="twitter-tweet"> <p lang="sv" dir="ltr">jekyll-twitter-plugin (1.0.0): A Liquid tag plugin for Jekyll that renders Tweets from Twitter API <a href="http://t.co/m4EIQPM9h4" rel="external nofollow noopener" target="_blank">http://t.co/m4EIQPM9h4</a></p>— RubyGems (@rubygems) <a href="https://twitter.com/rubygems/status/518821243320287232?ref_src=twsrc%5Etfw" rel="external nofollow noopener" target="_blank">October 5, 2014</a> </blockquote> <script async="" src="https://platform.twitter.com/widgets.js" charset="utf-8"></script> </div> <h1 id="timeline">Timeline</h1> <p>An example of pulling from a timeline:</p> <div class="jekyll-twitter-plugin"> <a class="twitter-timeline" data-width="500" data-tweet-limit="3" href="https://twitter.com/jekyllrb?ref_src=twsrc%5Etfw" rel="external nofollow noopener" target="_blank">Tweets by jekyllrb</a> <script async="" src="https://platform.twitter.com/widgets.js" charset="utf-8"></script> </div> <h1 id="additional-details">Additional Details</h1> <p>For more details on using the plugin visit: <a href="https://github.com/rob-murray/jekyll-twitter-plugin" rel="external nofollow noopener" target="_blank">jekyll-twitter-plugin</a></p> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2020/github-metadata/">a post with github metadata</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/code/">a post with code</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. Hosted by <a href="https://pages.github.com/" target="_blank" rel="external nofollow noopener">GitHub Pages</a>. </div> </footer> <script src="https://cdn.jsdelivr.net/npm/jquery@3.6.0/dist/jquery.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script> <script src="/assets/js/bootstrap.bundle.min.js"></script> <script src="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/js/mdb.min.js" integrity="sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/masonry-layout@4.2.2/dist/masonry.pkgd.min.js" integrity="sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/imagesloaded@5.0.0/imagesloaded.pkgd.min.js" integrity="sha256-htrLFfZJ6v5udOG+3kNLINIKh2gvoKqwEhHYfTTMICc=" crossorigin="anonymous"></script> <script defer src="/assets/js/masonry.js" type="text/javascript"></script> <script defer src="https://cdn.jsdelivr.net/npm/medium-zoom@1.1.0/dist/medium-zoom.min.js" integrity="sha256-ZgMyDAIYDYGxbcpJcfUnYwNevG/xi9OHKaR/8GK+jWc=" crossorigin="anonymous"></script> <script defer src="/assets/js/zoom.js?85ddb88934d28b74e78031fd54cf8308"></script> <script src="/assets/js/no_defer.js?2930004b8d7fcd0a8e00fdcfc8fc9f24"></script> <script defer src="/assets/js/common.js?da39b660470d1ba6e6b8bf5f37070b6e"></script> <script defer src="/assets/js/copy_code.js?12775fdf7f95e901d7119054556e495f" type="text/javascript"></script> <script defer src="/assets/js/jupyter_new_tab.js?d9f17b6adc2311cbabd747f4538bb15f"></script> <script async src="https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js"></script> <script async src="https://badge.dimensions.ai/badge.js"></script> <script type="text/javascript">window.MathJax={tex:{tags:"ams"}};</script> <script defer type="text/javascript" id="MathJax-script" src="https://cdn.jsdelivr.net/npm/mathjax@3.2.0/es5/tex-mml-chtml.js"></script> <script defer src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script> <script type="text/javascript">function progressBarSetup(){"max"in document.createElement("progress")?(initializeProgressElement(),$(document).on("scroll",function(){progressBar.attr({value:getCurrentScrollPosition()})}),$(window).on("resize",initializeProgressElement)):(resizeProgressBar(),$(document).on("scroll",resizeProgressBar),$(window).on("resize",resizeProgressBar))}function getCurrentScrollPosition(){return $(window).scrollTop()}function initializeProgressElement(){let e=$("#navbar").outerHeight(!0);$("body").css({"padding-top":e}),$("progress-container").css({"padding-top":e}),progressBar.css({top:e}),progressBar.attr({max:getDistanceToScroll(),value:getCurrentScrollPosition()})}function getDistanceToScroll(){return $(document).height()-$(window).height()}function resizeProgressBar(){progressBar.css({width:getWidthPercentage()+"%"})}function getWidthPercentage(){return getCurrentScrollPosition()/getDistanceToScroll()*100}const progressBar=$("#progress");window.onload=function(){setTimeout(progressBarSetup,50)};</script> </body> </html>
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diff --git a/blog/2021/diagrams/index.html b/blog/2021/diagrams/index.html
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@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with diagrams | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with diagrams"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2021/diagrams/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with diagrams</h1> <p class="post-meta"> July 04, 2021 </p> <p class="post-tags"> <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme supports generating various diagrams from a text description using <a href="https://mermaid-js.github.io/mermaid/" target="\_blank" rel="external nofollow noopener">mermaid</a>. Previously, this was done using the <a href="https://github.com/zhustec/jekyll-diagrams" target="\_blank" rel="external nofollow noopener">jekyll-diagrams</a> plugin. For more information on this matter, see the <a href="https://github.com/alshedivat/al-folio/issues/1609#issuecomment-1656995674" rel="external nofollow noopener" target="_blank">related issue</a>. To disable the zooming feature, set <code class="language-plaintext highlighter-rouge">mermaid.zoomable</code> to <code class="language-plaintext highlighter-rouge">false</code> in this post frontmatter.</p> <h2 id="mermaid">Mermaid</h2> <p>The diagram below was generated by the following code:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">mermaid
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with diagrams | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with diagrams"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2021/diagrams/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with diagrams</h1> <p class="post-meta"> July 04, 2021 </p> <p class="post-tags"> <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This theme supports generating various diagrams from a text description using <a href="https://mermaid-js.github.io/mermaid/" target="\_blank" rel="external nofollow noopener">mermaid</a>. Previously, this was done using the <a href="https://github.com/zhustec/jekyll-diagrams" target="\_blank" rel="external nofollow noopener">jekyll-diagrams</a> plugin. For more information on this matter, see the <a href="https://github.com/alshedivat/al-folio/issues/1609#issuecomment-1656995674" rel="external nofollow noopener" target="_blank">related issue</a>. To disable the zooming feature, set <code class="language-plaintext highlighter-rouge">mermaid.zoomable</code> to <code class="language-plaintext highlighter-rouge">false</code> in this post frontmatter.</p> <h2 id="mermaid">Mermaid</h2> <p>The diagram below was generated by the following code:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">mermaid
 </span><span class="sb">sequenceDiagram
     participant John
     participant Alice
diff --git a/blog/2021/distill/index.html b/blog/2021/distill/index.html
index 00fdff9..8d5bcf2 100644
--- a/blog/2021/distill/index.html
+++ b/blog/2021/distill/index.html
@@ -54,7 +54,7 @@
               ]
             }
           }
-    </script> </d-front-matter> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="post distill"> <d-title> <h1>a distill-style blog post</h1> <p>an example of a distill-style blog post and main elements</p> </d-title> <d-byline></d-byline> <d-article> <d-contents> <nav class="l-text figcaption"> <h3>Contents</h3> <div> <a href="#equations">Equations</a> </div> <div> <a href="#citations">Citations</a> </div> <div> <a href="#footnotes">Footnotes</a> </div> <div> <a href="#code-blocks">Code Blocks</a> </div> <div> <a href="#interactive-plots">Interactive Plots</a> </div> <div> <a href="#layouts">Layouts</a> </div> <div> <a href="#other-typography">Other Typography?</a> </div> </nav> </d-contents> <h2 id="equations">Equations</h2> <p>This theme supports rendering beautiful math in inline and display modes using <a href="https://www.mathjax.org/" rel="external nofollow noopener" target="_blank">MathJax 3</a> engine. You just need to surround your math expression with <code class="language-plaintext highlighter-rouge">$$</code>, like <code class="language-plaintext highlighter-rouge">$$ E = mc^2 $$</code>. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).</p> <p>To use display mode, again surround your expression with <code class="language-plaintext highlighter-rouge">$$</code> and place it as a separate paragraph. Here is an example:</p> \[\left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2 \right) \left( \sum_{k=1}^n b_k^2 \right)\] <p>Note that MathJax 3 is <a href="https://docs.mathjax.org/en/latest/upgrading/whats-new-3.0.html" rel="external nofollow noopener" target="_blank">a major re-write of MathJax</a> that brought a significant improvement to the loading and rendering speed, which is now <a href="http://www.intmath.com/cg5/katex-mathjax-comparison.php" rel="external nofollow noopener" target="_blank">on par with KaTeX</a>.</p> <hr> <h2 id="citations">Citations</h2> <p>Citations are then used in the article body with the <code class="language-plaintext highlighter-rouge">&lt;d-cite&gt;</code> tag. The key attribute is a reference to the id provided in the bibliography. The key attribute can take multiple ids, separated by commas.</p> <p>The citation is presented inline like this: <d-cite key="gregor2015draw"></d-cite> (a number that displays more information on hover). If you have an appendix, a bibliography is automatically created and populated in it.</p> <p>Distill chose a numerical inline citation style to improve readability of citation dense articles and because many of the benefits of longer citations are obviated by displaying more information on hover. However, we consider it good style to mention author last names if you discuss something at length and it fits into the flow well — the authors are human and it’s nice for them to have the community associate them with their work.</p> <hr> <h2 id="footnotes">Footnotes</h2> <p>Just wrap the text you would like to show up in a footnote in a <code class="language-plaintext highlighter-rouge">&lt;d-footnote&gt;</code> tag. The number of the footnote will be automatically generated.<d-footnote>This will become a hoverable footnote.</d-footnote></p> <hr> <h2 id="code-blocks">Code Blocks</h2> <p>Syntax highlighting is provided within <code class="language-plaintext highlighter-rouge">&lt;d-code&gt;</code> tags. An example of inline code snippets: <code class="language-plaintext highlighter-rouge">&lt;d-code language="html"&gt;let x = 10;&lt;/d-code&gt;</code>. For larger blocks of code, add a <code class="language-plaintext highlighter-rouge">block</code> attribute:</p> <d-code block="" language="javascript"> var x = 25; function(x) { return x * x; } </d-code> <p><strong>Note:</strong> <code class="language-plaintext highlighter-rouge">&lt;d-code&gt;</code> blocks do not look good in the dark mode. You can always use the default code-highlight using the <code class="language-plaintext highlighter-rouge">highlight</code> liquid tag:</p> <figure class="highlight"><pre><code class="language-javascript" data-lang="javascript"><span class="kd">var</span> <span class="nx">x</span> <span class="o">=</span> <span class="mi">25</span><span class="p">;</span>
+    </script> </d-front-matter> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="post distill"> <d-title> <h1>a distill-style blog post</h1> <p>an example of a distill-style blog post and main elements</p> </d-title> <d-byline></d-byline> <d-article> <d-contents> <nav class="l-text figcaption"> <h3>Contents</h3> <div> <a href="#equations">Equations</a> </div> <div> <a href="#citations">Citations</a> </div> <div> <a href="#footnotes">Footnotes</a> </div> <div> <a href="#code-blocks">Code Blocks</a> </div> <div> <a href="#interactive-plots">Interactive Plots</a> </div> <div> <a href="#layouts">Layouts</a> </div> <div> <a href="#other-typography">Other Typography?</a> </div> </nav> </d-contents> <h2 id="equations">Equations</h2> <p>This theme supports rendering beautiful math in inline and display modes using <a href="https://www.mathjax.org/" rel="external nofollow noopener" target="_blank">MathJax 3</a> engine. You just need to surround your math expression with <code class="language-plaintext highlighter-rouge">$$</code>, like <code class="language-plaintext highlighter-rouge">$$ E = mc^2 $$</code>. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).</p> <p>To use display mode, again surround your expression with <code class="language-plaintext highlighter-rouge">$$</code> and place it as a separate paragraph. Here is an example:</p> \[\left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2 \right) \left( \sum_{k=1}^n b_k^2 \right)\] <p>Note that MathJax 3 is <a href="https://docs.mathjax.org/en/latest/upgrading/whats-new-3.0.html" rel="external nofollow noopener" target="_blank">a major re-write of MathJax</a> that brought a significant improvement to the loading and rendering speed, which is now <a href="http://www.intmath.com/cg5/katex-mathjax-comparison.php" rel="external nofollow noopener" target="_blank">on par with KaTeX</a>.</p> <hr> <h2 id="citations">Citations</h2> <p>Citations are then used in the article body with the <code class="language-plaintext highlighter-rouge">&lt;d-cite&gt;</code> tag. The key attribute is a reference to the id provided in the bibliography. The key attribute can take multiple ids, separated by commas.</p> <p>The citation is presented inline like this: <d-cite key="gregor2015draw"></d-cite> (a number that displays more information on hover). If you have an appendix, a bibliography is automatically created and populated in it.</p> <p>Distill chose a numerical inline citation style to improve readability of citation dense articles and because many of the benefits of longer citations are obviated by displaying more information on hover. However, we consider it good style to mention author last names if you discuss something at length and it fits into the flow well — the authors are human and it’s nice for them to have the community associate them with their work.</p> <hr> <h2 id="footnotes">Footnotes</h2> <p>Just wrap the text you would like to show up in a footnote in a <code class="language-plaintext highlighter-rouge">&lt;d-footnote&gt;</code> tag. The number of the footnote will be automatically generated.<d-footnote>This will become a hoverable footnote.</d-footnote></p> <hr> <h2 id="code-blocks">Code Blocks</h2> <p>Syntax highlighting is provided within <code class="language-plaintext highlighter-rouge">&lt;d-code&gt;</code> tags. An example of inline code snippets: <code class="language-plaintext highlighter-rouge">&lt;d-code language="html"&gt;let x = 10;&lt;/d-code&gt;</code>. For larger blocks of code, add a <code class="language-plaintext highlighter-rouge">block</code> attribute:</p> <d-code block="" language="javascript"> var x = 25; function(x) { return x * x; } </d-code> <p><strong>Note:</strong> <code class="language-plaintext highlighter-rouge">&lt;d-code&gt;</code> blocks do not look good in the dark mode. You can always use the default code-highlight using the <code class="language-plaintext highlighter-rouge">highlight</code> liquid tag:</p> <figure class="highlight"><pre><code class="language-javascript" data-lang="javascript"><span class="kd">var</span> <span class="nx">x</span> <span class="o">=</span> <span class="mi">25</span><span class="p">;</span>
 <span class="kd">function</span><span class="p">(</span><span class="nx">x</span><span class="p">)</span> <span class="p">{</span>
 <span class="k">return</span> <span class="nx">x</span> <span class="err">\</span><span class="o">*</span> <span class="nx">x</span><span class="p">;</span>
 <span class="p">}</span></code></pre></figure> <hr> <h2 id="interactive-plots">Interactive Plots</h2> <p>You can add interative plots using plotly + iframes <img class="emoji" title=":framed_picture:" alt=":framed_picture:" src="https://github.githubassets.com/images/icons/emoji/unicode/1f5bc.png" height="20" width="20"></p> <div class="l-page"> <iframe src="/assets/plotly/demo.html" frameborder="0" scrolling="no" height="500px" width="100%" style="border: 1px dashed grey;"></iframe> </div> <p>The plot must be generated separately and saved into an HTML file. To generate the plot that you see above, you can use the following code snippet:</p> <figure class="highlight"><pre><code class="language-python" data-lang="python"><span class="kn">import</span> <span class="n">pandas</span> <span class="k">as</span> <span class="n">pd</span>
diff --git a/blog/2021/index.html b/blog/2021/index.html
index 51b4bf6..eeb802a 100644
--- a/blog/2021/index.html
+++ b/blog/2021/index.html
@@ -1 +1 @@
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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> 2021 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/blog/2022/giscus-comments/index.html b/blog/2022/giscus-comments/index.html
index 3666c5e..66c9c2b 100644
--- a/blog/2022/giscus-comments/index.html
+++ b/blog/2022/giscus-comments/index.html
@@ -1 +1 @@
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id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with giscus comments</h1> <p class="post-meta"> December 10, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add GISCUS comments.</p> </div> </article> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with giscus comments | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with giscus comments"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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<button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with giscus comments</h1> <p class="post-meta"> December 10, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add GISCUS comments.</p> </div> </article> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container 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diff --git a/blog/2022/index.html b/blog/2022/index.html
index a04c851..20b6ee2 100644
--- a/blog/2022/index.html
+++ b/blog/2022/index.html
@@ -1 +1 @@
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diff --git a/blog/2022/redirect/index.html b/blog/2022/redirect/index.html
index dd87be4..4ab6470 100644
--- a/blog/2022/redirect/index.html
+++ b/blog/2022/redirect/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta http-equiv="refresh" content="3; url=/assets/pdf/example_pdf.pdf"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with redirect | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="you can also redirect to assets like pdf"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" 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src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with redirect</h1> <p class="post-meta"> February 01, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a> </p> </header> <article class="post-content"> <div id="markdown-content"> <p>Redirecting to another page.</p> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you 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diff --git a/blog/2023/audios/index.html b/blog/2023/audios/index.html
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It supports local audio files.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <audio src="/assets/audio/epicaly-short-113909.mp3" controls=""></audio> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <audio src="https://cdn.pixabay.com/download/audio/2022/06/25/audio_69a61cd6d6.mp3" controls=""></audio> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all. </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with audios | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included audios could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/audios/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with audios</h1> <p class="post-meta"> April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/audios"> <i class="fa-solid fa-hashtag fa-sm"></i> audios</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with audios. It supports local audio files.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <audio src="/assets/audio/epicaly-short-113909.mp3" controls=""></audio> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <audio src="https://cdn.pixabay.com/download/audio/2022/06/25/audio_69a61cd6d6.mp3" controls=""></audio> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all. </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with custom blockquotes | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with custom blockquotes"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/custom-blockquotes/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with custom blockquotes</h1> <p class="post-meta"> May 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/blockquotes"> <i class="fa-solid fa-hashtag fa-sm"></i> blockquotes</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add custom styles for blockquotes. Based on <a href="https://github.com/sighingnow/jekyll-gitbook" rel="external nofollow noopener" target="_blank">jekyll-gitbook</a> implementation.</p> <p>We decided to support the same custom blockquotes as in <a href="https://sighingnow.github.io/jekyll-gitbook/jekyll/2022-06-30-tips_warnings_dangers.html" rel="external nofollow noopener" target="_blank">jekyll-gitbook</a>, which are also found in a lot of other sites’ styles. The styles definitions can be found on the <a href="https://github.com/alshedivat/al-folio/blob/master/_sass/_base.scss" rel="external nofollow noopener" target="_blank">_base.scss</a> file, more specifically:</p> <div class="language-scss highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="cm">/* Tips, warnings, and dangers */</span>
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with custom blockquotes | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with custom blockquotes"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/custom-blockquotes/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with custom blockquotes</h1> <p class="post-meta"> May 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/blockquotes"> <i class="fa-solid fa-hashtag fa-sm"></i> blockquotes</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add custom styles for blockquotes. Based on <a href="https://github.com/sighingnow/jekyll-gitbook" rel="external nofollow noopener" target="_blank">jekyll-gitbook</a> implementation.</p> <p>We decided to support the same custom blockquotes as in <a href="https://sighingnow.github.io/jekyll-gitbook/jekyll/2022-06-30-tips_warnings_dangers.html" rel="external nofollow noopener" target="_blank">jekyll-gitbook</a>, which are also found in a lot of other sites’ styles. The styles definitions can be found on the <a href="https://github.com/alshedivat/al-folio/blob/master/_sass/_base.scss" rel="external nofollow noopener" target="_blank">_base.scss</a> file, more specifically:</p> <div class="language-scss highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="cm">/* Tips, warnings, and dangers */</span>
 <span class="nc">.post</span> <span class="nc">.post-content</span> <span class="nt">blockquote</span> <span class="p">{</span>
   <span class="k">&amp;</span><span class="nc">.block-tip</span> <span class="p">{</span>
     <span class="nl">border-color</span><span class="p">:</span> <span class="nf">var</span><span class="p">(</span><span class="o">--</span><span class="n">global-tip-block</span><span class="p">);</span>
diff --git a/blog/2023/index.html b/blog/2023/index.html
index 1d124f4..d343744 100644
--- a/blog/2023/index.html
+++ b/blog/2023/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> 2023 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. "> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title"> <i class="fa-solid fa-calendar fa-sm"></i> 2023</h1> <p class="post-description">an archive of posts from this year</p> </header> <article> <div class="table-responsive"> <table class="table table-sm table-borderless"> <tr> <th scope="row">Dec 12, 2023</th> <td> <a class="post-link" href="/blog/2023/tikzjax/">a post with TikZJax</a> </td> </tr> <tr> <th scope="row">Jul 12, 2023</th> <td> <a class="post-link" href="/blog/2023/post-bibliography/">a post with bibliography</a> </td> </tr> <tr> <th scope="row">Jul 04, 2023</th> <td> <a class="post-link" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </td> </tr> <tr> <th scope="row">May 12, 2023</th> <td> <a class="post-link" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/audios/">a post with audios</a> </td> </tr> <tr> <th scope="row">Apr 24, 2023</th> <td> <a class="post-link" href="/blog/2023/videos/">a post with videos</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/table-of-contents/">a post with table of contents</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> 2023 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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class="post-header"> <h1 class="post-title"> <i class="fa-solid fa-calendar fa-sm"></i> 2023</h1> <p class="post-description">an archive of posts from this year</p> </header> <article> <div class="table-responsive"> <table class="table table-sm table-borderless"> <tr> <th scope="row">Dec 12, 2023</th> <td> <a class="post-link" href="/blog/2023/tikzjax/">a post with TikZJax</a> </td> </tr> <tr> <th scope="row">Jul 12, 2023</th> <td> <a class="post-link" href="/blog/2023/post-bibliography/">a post with bibliography</a> </td> </tr> <tr> <th scope="row">Jul 04, 2023</th> <td> <a class="post-link" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </td> </tr> <tr> <th scope="row">May 12, 2023</th> <td> <a class="post-link" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/audios/">a post with audios</a> </td> </tr> <tr> <th scope="row">Apr 24, 2023</th> <td> <a class="post-link" href="/blog/2023/videos/">a post with videos</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/table-of-contents/">a post with table of contents</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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diff --git a/blog/2023/jupyter-notebook/index.html b/blog/2023/jupyter-notebook/index.html
index 6c5f7c6..2b9922e 100644
--- a/blog/2023/jupyter-notebook/index.html
+++ b/blog/2023/jupyter-notebook/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with jupyter notebook | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with jupyter notebook"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with jupyter notebook</h1> <p class="post-meta"> July 04, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/jupyter"> <i class="fa-solid fa-hashtag fa-sm"></i> jupyter</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>To include a jupyter notebook in a post, you can use the following code:</p> <div class="language-liquid highlighter-rouge"><div class="highlight"><pre class="highlight"><code>{::nomarkdown}
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with jupyter notebook | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with jupyter notebook"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/jupyter-notebook/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with jupyter notebook</h1> <p class="post-meta"> July 04, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/jupyter"> <i class="fa-solid fa-hashtag fa-sm"></i> jupyter</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>To include a jupyter notebook in a post, you can use the following code:</p> <div class="language-liquid highlighter-rouge"><div class="highlight"><pre class="highlight"><code>{::nomarkdown}
 <span class="cp">{%</span><span class="w"> </span><span class="nt">assign</span><span class="w"> </span><span class="nv">jupyter_path</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'assets/jupyter/blog.ipynb'</span><span class="w"> </span><span class="p">|</span><span class="w"> </span><span class="nf">relative_url</span><span class="w"> </span><span class="cp">%}</span>
 <span class="cp">{%</span><span class="w"> </span><span class="nt">capture</span><span class="w"> </span><span class="nv">notebook_exists</span><span class="w"> </span><span class="cp">%}{%</span><span class="w"> </span><span class="nt">file_exists</span><span class="w"> </span>assets/jupyter/blog.ipynb<span class="w"> </span><span class="cp">%}{%</span><span class="w"> </span><span class="nt">endcapture</span><span class="w"> </span><span class="cp">%}</span>
 <span class="cp">{%</span><span class="w"> </span><span class="nt">if</span><span class="w"> </span><span class="nv">notebook_exists</span><span class="w"> </span><span class="o">==</span><span class="w"> </span><span class="s1">'true'</span><span class="w"> </span><span class="cp">%}</span>
diff --git a/blog/2023/post-bibliography/index.html b/blog/2023/post-bibliography/index.html
index 83e8958..7f84c74 100644
--- a/blog/2023/post-bibliography/index.html
+++ b/blog/2023/post-bibliography/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with bibliography | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with bibliography"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/post-bibliography/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with bibliography</h1> <p class="post-meta"> July 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/bib"> <i class="fa-solid fa-hashtag fa-sm"></i> bib</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add bibliography to simple blog posts. We support every citation style that <a href="https://github.com/inukshuk/jekyll-scholar" rel="external nofollow noopener" target="_blank">jekyll-scholar</a> does. That means simple citation like (missing reference), multiple citations like (missing reference), long references like (missing reference) or also quotes:</p> <blockquote> <p>Lorem ipsum dolor sit amet, consectetur adipisicing elit,<br>sed do eiusmod tempor.</p> <p>Lorem ipsum dolor sit amet, consectetur adipisicing.</p> <cite>(missing reference)</cite> </blockquote> <p>If you would like something more academic, check the <a href="/blog/2021/distill/">distill style post</a>.</p> </div> </article> <h2>References</h2> <div class="publications"> </div> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with bibliography | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with bibliography"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/post-bibliography/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with bibliography</h1> <p class="post-meta"> July 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/bib"> <i class="fa-solid fa-hashtag fa-sm"></i> bib</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add bibliography to simple blog posts. We support every citation style that <a href="https://github.com/inukshuk/jekyll-scholar" rel="external nofollow noopener" target="_blank">jekyll-scholar</a> does. That means simple citation like (missing reference), multiple citations like (missing reference), long references like (missing reference) or also quotes:</p> <blockquote> <p>Lorem ipsum dolor sit amet, consectetur adipisicing elit,<br>sed do eiusmod tempor.</p> <p>Lorem ipsum dolor sit amet, consectetur adipisicing.</p> <cite>(missing reference)</cite> </blockquote> <p>If you would like something more academic, check the <a href="/blog/2021/distill/">distill style post</a>.</p> </div> </article> <h2>References</h2> <div class="publications"> </div> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. Hosted by <a href="https://pages.github.com/" target="_blank" rel="external nofollow noopener">GitHub Pages</a>. </div> </footer> <script src="https://cdn.jsdelivr.net/npm/jquery@3.6.0/dist/jquery.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script> <script src="/assets/js/bootstrap.bundle.min.js"></script> <script src="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/js/mdb.min.js" integrity="sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/masonry-layout@4.2.2/dist/masonry.pkgd.min.js" integrity="sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/imagesloaded@5.0.0/imagesloaded.pkgd.min.js" integrity="sha256-htrLFfZJ6v5udOG+3kNLINIKh2gvoKqwEhHYfTTMICc=" crossorigin="anonymous"></script> <script defer src="/assets/js/masonry.js" type="text/javascript"></script> <script defer src="https://cdn.jsdelivr.net/npm/medium-zoom@1.1.0/dist/medium-zoom.min.js" integrity="sha256-ZgMyDAIYDYGxbcpJcfUnYwNevG/xi9OHKaR/8GK+jWc=" crossorigin="anonymous"></script> <script defer src="/assets/js/zoom.js?85ddb88934d28b74e78031fd54cf8308"></script> <script src="/assets/js/no_defer.js?2930004b8d7fcd0a8e00fdcfc8fc9f24"></script> <script defer src="/assets/js/common.js?da39b660470d1ba6e6b8bf5f37070b6e"></script> <script defer src="/assets/js/copy_code.js?12775fdf7f95e901d7119054556e495f" type="text/javascript"></script> <script defer src="/assets/js/jupyter_new_tab.js?d9f17b6adc2311cbabd747f4538bb15f"></script> <script async src="https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js"></script> <script async src="https://badge.dimensions.ai/badge.js"></script> <script type="text/javascript">window.MathJax={tex:{tags:"ams"}};</script> <script defer type="text/javascript" id="MathJax-script" src="https://cdn.jsdelivr.net/npm/mathjax@3.2.0/es5/tex-mml-chtml.js"></script> <script defer src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script> <script type="text/javascript">function progressBarSetup(){"max"in document.createElement("progress")?(initializeProgressElement(),$(document).on("scroll",function(){progressBar.attr({value:getCurrentScrollPosition()})}),$(window).on("resize",initializeProgressElement)):(resizeProgressBar(),$(document).on("scroll",resizeProgressBar),$(window).on("resize",resizeProgressBar))}function getCurrentScrollPosition(){return $(window).scrollTop()}function initializeProgressElement(){let e=$("#navbar").outerHeight(!0);$("body").css({"padding-top":e}),$("progress-container").css({"padding-top":e}),progressBar.css({top:e}),progressBar.attr({max:getDistanceToScroll(),value:getCurrentScrollPosition()})}function getDistanceToScroll(){return $(document).height()-$(window).height()}function resizeProgressBar(){progressBar.css({width:getWidthPercentage()+"%"})}function getWidthPercentage(){return getCurrentScrollPosition()/getDistanceToScroll()*100}const progressBar=$("#progress");window.onload=function(){setTimeout(progressBarSetup,50)};</script> </body> </html>
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diff --git a/blog/2023/sidebar-table-of-contents/index.html b/blog/2023/sidebar-table-of-contents/index.html
index e6fbcf9..77efd64 100644
--- a/blog/2023/sidebar-table-of-contents/index.html
+++ b/blog/2023/sidebar-table-of-contents/index.html
@@ -1,3 +1,3 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with table of contents on a sidebar | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with table of contents on a sidebar"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer 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toc</a>   <a href="/blog/tag/sidebar"> <i class="fa-solid fa-hashtag fa-sm"></i> sidebar</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add a table of contents as a sidebar.</p> <h2 id="adding-a-table-of-contents">Adding a Table of Contents</h2> <p>To add a table of contents to a post as a sidebar, simply add</p> <div class="language-yml highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="na">toc</span><span class="pi">:</span>
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with table of contents on a sidebar | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with table of contents on a sidebar"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer 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<script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="row"> <div class="col-sm-3"> <nav id="toc-sidebar" class="sticky-top"></nav> </div> <div class="col-sm-9"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with table of contents on a sidebar</h1> <p class="post-meta"> April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>   <a href="/blog/tag/sidebar"> <i class="fa-solid fa-hashtag fa-sm"></i> sidebar</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This post shows how to add a table of contents as a sidebar.</p> <h2 id="adding-a-table-of-contents">Adding a Table of Contents</h2> <p>To add a table of contents to a post as a sidebar, simply add</p> <div class="language-yml highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="na">toc</span><span class="pi">:</span>
   <span class="na">sidebar</span><span class="pi">:</span> <span class="s">left</span>
 </code></pre></div></div> <p>to the front matter of the post. The table of contents will be automatically generated from the headings in the post. If you wish to display the sidebar to the right, simply change <code class="language-plaintext highlighter-rouge">left</code> to <code class="language-plaintext highlighter-rouge">right</code>.</p> <h3 id="example-of-sub-heading-1">Example of Sub-Heading 1</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h3 id="example-of-another-sub-heading-1">Example of another Sub-Heading 1</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h2 id="customizing-your-table-of-contents">Customizing Your Table of Contents</h2> <p data-toc-text="Customizing">If you want to learn more about how to customize the table of contents of your sidebar, you can check the <a href="https://afeld.github.io/bootstrap-toc/" rel="external nofollow noopener" target="_blank">bootstrap-toc</a> documentation. Notice that you can even customize the text of the heading that will be displayed on the sidebar.</p> <h3 id="example-of-sub-heading-2">Example of Sub-Heading 2</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h3 id="example-of-another-sub-heading-2">Example of another Sub-Heading 2</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> </div> </article> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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@@ -1,3 +1,3 @@
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id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with table of contents</h1> <p class="post-meta"> March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="table-of-contents"> <ul id="toc" class="section-nav"> <li class="toc-entry toc-h2"> <a href="#adding-a-table-of-contents">Adding a Table of Contents</a> <ul> <li class="toc-entry toc-h3"><a href="#example-of-sub-heading-1">Example of Sub-Heading 1</a></li> <li class="toc-entry toc-h3"><a href="#example-of-another-sub-heading-1">Example of another Sub-Heading 1</a></li> </ul> </li> <li class="toc-entry toc-h2"> <a href="#table-of-contents-options">Table of Contents Options</a> <ul> <li class="toc-entry toc-h3"><a href="#example-of-sub-heading-2">Example of Sub-Heading 2</a></li> <li class="toc-entry toc-h3"><a href="#example-of-another-sub-heading-2">Example of another Sub-Heading 2</a></li> </ul> </li> </ul> </div> <hr> <div id="markdown-content"> <p>This post shows how to add a table of contents in the beginning of the post.</p> <h2 id="adding-a-table-of-contents">Adding a Table of Contents</h2> <p>To add a table of contents to a post, simply add</p> <div class="language-yml highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="na">toc</span><span class="pi">:</span>
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with table of contents | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of a blog post with table of contents"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with table of contents</h1> <p class="post-meta"> March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="table-of-contents"> <ul id="toc" class="section-nav"> <li class="toc-entry toc-h2"> <a href="#adding-a-table-of-contents">Adding a Table of Contents</a> <ul> <li class="toc-entry toc-h3"><a href="#example-of-sub-heading-1">Example of Sub-Heading 1</a></li> <li class="toc-entry toc-h3"><a href="#example-of-another-sub-heading-1">Example of another Sub-Heading 1</a></li> </ul> </li> <li class="toc-entry toc-h2"> <a href="#table-of-contents-options">Table of Contents Options</a> <ul> <li class="toc-entry toc-h3"><a href="#example-of-sub-heading-2">Example of Sub-Heading 2</a></li> <li class="toc-entry toc-h3"><a href="#example-of-another-sub-heading-2">Example of another Sub-Heading 2</a></li> </ul> </li> </ul> </div> <hr> <div id="markdown-content"> <p>This post shows how to add a table of contents in the beginning of the post.</p> <h2 id="adding-a-table-of-contents">Adding a Table of Contents</h2> <p>To add a table of contents to a post, simply add</p> <div class="language-yml highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="na">toc</span><span class="pi">:</span>
   <span class="na">beginning</span><span class="pi">:</span> <span class="kc">true</span>
 </code></pre></div></div> <p>to the front matter of the post. The table of contents will be automatically generated from the headings in the post.</p> <h3 id="example-of-sub-heading-1">Example of Sub-Heading 1</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h3 id="example-of-another-sub-heading-1">Example of another Sub-Heading 1</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h2 id="table-of-contents-options">Table of Contents Options</h2> <p>If you want to learn more about how to customize the table of contents, you can check the <a href="https://github.com/toshimaru/jekyll-toc" rel="external nofollow noopener" target="_blank">jekyll-toc</a> repository.</p> <h3 id="example-of-sub-heading-2">Example of Sub-Heading 2</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> <h3 id="example-of-another-sub-heading-2">Example of another Sub-Heading 2</h3> <p>Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. <a href="https://www.pinterest.com" rel="external nofollow noopener" target="_blank">Pinterest</a> DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade <a href="https://en.wikipedia.org/wiki/Cold-pressed_juice" rel="external nofollow noopener" target="_blank">cold-pressed</a> meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.</p> </div> </article> <div id="giscus_thread" style="max-width: 800px; margin: 0 auto;"> <script>let giscusTheme=localStorage.getItem("theme"),giscusAttributes={src:"https://giscus.app/client.js","data-repo":"daniel-manrique/daniel-manrique.github.io","data-repo-id":"","data-category":"Comments","data-category-id":"","data-mapping":"title","data-strict":"1","data-reactions-enabled":"1","data-emit-metadata":"0","data-input-position":"bottom","data-theme":giscusTheme,"data-lang":"en",crossorigin:"anonymous",async:""},giscusScript=document.createElement("script");Object.entries(giscusAttributes).forEach(([t,e])=>giscusScript.setAttribute(t,e)),document.getElementById("giscus_thread").appendChild(giscusScript);</script> <noscript>Please enable JavaScript to view the <a href="http://giscus.app/?ref_noscript" rel="external nofollow noopener" target="_blank">comments powered by giscus.</a> </noscript> </div> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> displaying beautiful tables with Bootstrap Tables | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of how to use Bootstrap Tables"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="https://unpkg.com/bootstrap-table@1.22.1/dist/bootstrap-table.min.css"> <link defer 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src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">displaying beautiful tables with Bootstrap Tables</h1> <p class="post-meta"> March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/tables"> <i class="fa-solid fa-hashtag fa-sm"></i> tables</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>Using markdown to display tables is easy. Just use the following syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code>| Left aligned | Center aligned | Right aligned |
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> displaying beautiful tables with Bootstrap Tables | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="an example of how to use Bootstrap Tables"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="https://unpkg.com/bootstrap-table@1.22.1/dist/bootstrap-table.min.css"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/tables/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">displaying beautiful tables with Bootstrap Tables</h1> <p class="post-meta"> March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/tables"> <i class="fa-solid fa-hashtag fa-sm"></i> tables</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>Using markdown to display tables is easy. Just use the following syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code>| Left aligned | Center aligned | Right aligned |
 | :----------- | :------------: | ------------: |
 | Left 1       |    center 1    |       right 1 |
 | Left 2       |    center 2    |       right 2 |
diff --git a/blog/2023/tikzjax/index.html b/blog/2023/tikzjax/index.html
index d3a8692..14f8e7c 100644
--- a/blog/2023/tikzjax/index.html
+++ b/blog/2023/tikzjax/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with TikZJax | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included TikZ code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/tikzjax/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> <link defer rel="stylesheet" type="text/css" href="https://tikzjax.com/v1/fonts.css"> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with TikZJax</h1> <p class="post-meta"> December 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with TikZ code. TikZJax converts script tags (containing TikZ code) into SVGs.</p> <script type="text/tikz">
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with TikZJax | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included TikZ code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/tikzjax/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> <link defer rel="stylesheet" type="text/css" href="https://tikzjax.com/v1/fonts.css"> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with TikZJax</h1> <p class="post-meta"> December 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with TikZ code. TikZJax converts script tags (containing TikZ code) into SVGs.</p> <script type="text/tikz">
 \begin{tikzpicture}
     \draw[red,fill=black!60!red] (0,0) circle [radius=1.5];
     \draw[green,fill=black!60!green] (0,0) circle [x radius=1.5cm, y radius=10mm];
diff --git a/blog/2023/videos/index.html b/blog/2023/videos/index.html
index bd43895..bc5be25 100644
--- a/blog/2023/videos/index.html
+++ b/blog/2023/videos/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with videos | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included videos could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/videos/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with videos</h1> <p class="post-meta"> April 24, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/videos"> <i class="fa-solid fa-hashtag fa-sm"></i> videos</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with videos. It supports local video files.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <video src="/assets/video/pexels-engin-akyurt-6069112-960x540-30fps.mp4" class="img-fluid rounded z-depth-1" width="auto" height="auto" autoplay="" controls=""></video> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <video src="/assets/video/pexels-engin-akyurt-6069112-960x540-30fps.mp4" class="img-fluid rounded z-depth-1" width="auto" height="auto" controls=""></video> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all. </div> <p>It does also support embedding videos from different sources. Here are some examples:</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <iframe src="https://www.youtube.com/embed/jNQXAC9IVRw" class="img-fluid rounded z-depth-1" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen="" width="auto" height="auto"></iframe> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <iframe src="https://player.vimeo.com/video/524933864?h=1ac4fd9fb4&amp;title=0&amp;byline=0&amp;portrait=0" class="img-fluid rounded z-depth-1" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen="" width="auto" height="auto"></iframe> </figure> </div> </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/audios/">a post with audios</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with videos | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included videos could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2023/videos/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with videos</h1> <p class="post-meta"> April 24, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/videos"> <i class="fa-solid fa-hashtag fa-sm"></i> videos</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with videos. It supports local video files.</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <video src="/assets/video/pexels-engin-akyurt-6069112-960x540-30fps.mp4" class="img-fluid rounded z-depth-1" width="auto" height="auto" autoplay="" controls=""></video> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <video src="/assets/video/pexels-engin-akyurt-6069112-960x540-30fps.mp4" class="img-fluid rounded z-depth-1" width="auto" height="auto" controls=""></video> </figure> </div> </div> <div class="caption"> A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all. </div> <p>It does also support embedding videos from different sources. Here are some examples:</p> <div class="row mt-3"> <div class="col-sm mt-3 mt-md-0"> <figure> <iframe src="https://www.youtube.com/embed/jNQXAC9IVRw" class="img-fluid rounded z-depth-1" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen="" width="auto" height="auto"></iframe> </figure> </div> <div class="col-sm mt-3 mt-md-0"> <figure> <iframe src="https://player.vimeo.com/video/524933864?h=1ac4fd9fb4&amp;title=0&amp;byline=0&amp;portrait=0" class="img-fluid rounded z-depth-1" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen="" width="auto" height="auto"></iframe> </figure> </div> </div> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/audios/">a post with audios</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/advanced-images/">a post with advanced image components</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. Hosted by <a href="https://pages.github.com/" target="_blank" rel="external nofollow noopener">GitHub Pages</a>. </div> </footer> <script src="https://cdn.jsdelivr.net/npm/jquery@3.6.0/dist/jquery.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script> <script src="/assets/js/bootstrap.bundle.min.js"></script> <script src="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/js/mdb.min.js" integrity="sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/masonry-layout@4.2.2/dist/masonry.pkgd.min.js" integrity="sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI=" crossorigin="anonymous"></script> <script defer src="https://cdn.jsdelivr.net/npm/imagesloaded@5.0.0/imagesloaded.pkgd.min.js" integrity="sha256-htrLFfZJ6v5udOG+3kNLINIKh2gvoKqwEhHYfTTMICc=" crossorigin="anonymous"></script> <script defer src="/assets/js/masonry.js" type="text/javascript"></script> <script defer src="https://cdn.jsdelivr.net/npm/medium-zoom@1.1.0/dist/medium-zoom.min.js" integrity="sha256-ZgMyDAIYDYGxbcpJcfUnYwNevG/xi9OHKaR/8GK+jWc=" crossorigin="anonymous"></script> <script defer src="/assets/js/zoom.js?85ddb88934d28b74e78031fd54cf8308"></script> <script src="/assets/js/no_defer.js?2930004b8d7fcd0a8e00fdcfc8fc9f24"></script> <script defer src="/assets/js/common.js?da39b660470d1ba6e6b8bf5f37070b6e"></script> <script defer src="/assets/js/copy_code.js?12775fdf7f95e901d7119054556e495f" type="text/javascript"></script> <script defer src="/assets/js/jupyter_new_tab.js?d9f17b6adc2311cbabd747f4538bb15f"></script> <script async src="https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js"></script> <script async src="https://badge.dimensions.ai/badge.js"></script> <script type="text/javascript">window.MathJax={tex:{tags:"ams"}};</script> <script defer type="text/javascript" id="MathJax-script" src="https://cdn.jsdelivr.net/npm/mathjax@3.2.0/es5/tex-mml-chtml.js"></script> <script defer src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script> <script type="text/javascript">function progressBarSetup(){"max"in document.createElement("progress")?(initializeProgressElement(),$(document).on("scroll",function(){progressBar.attr({value:getCurrentScrollPosition()})}),$(window).on("resize",initializeProgressElement)):(resizeProgressBar(),$(document).on("scroll",resizeProgressBar),$(window).on("resize",resizeProgressBar))}function getCurrentScrollPosition(){return $(window).scrollTop()}function initializeProgressElement(){let e=$("#navbar").outerHeight(!0);$("body").css({"padding-top":e}),$("progress-container").css({"padding-top":e}),progressBar.css({top:e}),progressBar.attr({max:getDistanceToScroll(),value:getCurrentScrollPosition()})}function getDistanceToScroll(){return $(document).height()-$(window).height()}function resizeProgressBar(){progressBar.css({width:getWidthPercentage()+"%"})}function getWidthPercentage(){return getCurrentScrollPosition()/getDistanceToScroll()*100}const progressBar=$("#progress");window.onload=function(){setTimeout(progressBarSetup,50)};</script> </body> </html>
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with advanced image components | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what advanced image components could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" 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aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with advanced image components</h1> <p class="post-meta"> January 27, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/images"> <i class="fa-solid fa-hashtag fa-sm"></i> images</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with advanced image components.</p> <h2 id="image-slider">Image Slider</h2> <p>This is a simple image slider. It uses the <a href="https://swiperjs.com/" rel="external nofollow noopener" target="_blank">Swiper</a> library. Check the <a href="https://swiperjs.com/demos" rel="external nofollow noopener" target="_blank">examples page</a> for more information of what you can achieve with it.</p> <swiper-container keyboard="true" navigation="true" pagination="true" pagination-clickable="true" pagination-dynamic-bullets="true" rewind="true"> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/9-480.webp 480w,/assets/img/9-800.webp 800w,/assets/img/9-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/9.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/8-480.webp 480w,/assets/img/8-800.webp 800w,/assets/img/8-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/8.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/10-480.webp 480w,/assets/img/10-800.webp 800w,/assets/img/10-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/10.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/12-480.webp 480w,/assets/img/12-800.webp 800w,/assets/img/12-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/12.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> </swiper-container> <h2 id="image-comparison-slider">Image Comparison Slider</h2> <p>This is a simple image comparison slider. It uses the <a href="https://img-comparison-slider.sneas.io/" rel="external nofollow noopener" target="_blank">img-comparison-slider</a> library. Check the <a href="https://img-comparison-slider.sneas.io/examples.html" rel="external nofollow noopener" target="_blank">examples page</a> for more information of what you can achieve with it.</p> <img-comparison-slider> <figure slot="first"> <picture> <source class="responsive-img-srcset" srcset="/assets/img/prof_pic-480.webp 480w,/assets/img/prof_pic-800.webp 800w,/assets/img/prof_pic-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/prof_pic.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <figure slot="second"> <picture> <source class="responsive-img-srcset" srcset="/assets/img/prof_pic_color-480.webp 480w,/assets/img/prof_pic_color-800.webp 800w,/assets/img/prof_pic_color-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/prof_pic_color.png" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </img-comparison-slider> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/code-diff/">a post with code diff</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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href="/blog/tag/images"> <i class="fa-solid fa-hashtag fa-sm"></i> images</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with advanced image components.</p> <h2 id="image-slider">Image Slider</h2> <p>This is a simple image slider. It uses the <a href="https://swiperjs.com/" rel="external nofollow noopener" target="_blank">Swiper</a> library. Check the <a href="https://swiperjs.com/demos" rel="external nofollow noopener" target="_blank">examples page</a> for more information of what you can achieve with it.</p> <swiper-container keyboard="true" navigation="true" pagination="true" pagination-clickable="true" pagination-dynamic-bullets="true" rewind="true"> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/9-480.webp 480w,/assets/img/9-800.webp 800w,/assets/img/9-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/9.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/7-480.webp 480w,/assets/img/7-800.webp 800w,/assets/img/7-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/7.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/8-480.webp 480w,/assets/img/8-800.webp 800w,/assets/img/8-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/8.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/10-480.webp 480w,/assets/img/10-800.webp 800w,/assets/img/10-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/10.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> <swiper-slide> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/12-480.webp 480w,/assets/img/12-800.webp 800w,/assets/img/12-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/12.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </swiper-slide> </swiper-container> <h2 id="image-comparison-slider">Image Comparison Slider</h2> <p>This is a simple image comparison slider. It uses the <a href="https://img-comparison-slider.sneas.io/" rel="external nofollow noopener" target="_blank">img-comparison-slider</a> library. Check the <a href="https://img-comparison-slider.sneas.io/examples.html" rel="external nofollow noopener" target="_blank">examples page</a> for more information of what you can achieve with it.</p> <img-comparison-slider> <figure slot="first"> <picture> <source class="responsive-img-srcset" srcset="/assets/img/prof_pic-480.webp 480w,/assets/img/prof_pic-800.webp 800w,/assets/img/prof_pic-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/prof_pic.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <figure slot="second"> <picture> <source class="responsive-img-srcset" srcset="/assets/img/prof_pic_color-480.webp 480w,/assets/img/prof_pic_color-800.webp 800w,/assets/img/prof_pic_color-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/prof_pic_color.png" class="img-fluid rounded z-depth-1" width="100%" height="auto" loading="lazy" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </img-comparison-slider> </div> </article> <br> <hr> <br> <ul class="list-disc pl-8"></ul> <h2 class="text-3xl font-semibold mb-4 mt-12">Enjoy Reading This Article?</h2> <p class="mb-2">Here are some more articles you might like to read next:</p> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2015/images/">a post with images</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/videos/">a post with videos</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2021/distill/">a distill-style blog post</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </li> <li class="my-2"> <a class="text-pink-700 underline font-semibold hover:text-pink-800" href="/blog/2024/code-diff/">a post with code diff</a> </li> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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diff --git a/blog/2024/chartjs/index.html b/blog/2024/chartjs/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with chart.js | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included chart.js code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with chart.js</h1> <p class="post-meta"> January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://www.chartjs.org/" rel="external nofollow noopener" target="_blank">chart.js</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">chartjs
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with chart.js | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included chart.js code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/chartjs/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with chart.js</h1> <p class="post-meta"> January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://www.chartjs.org/" rel="external nofollow noopener" target="_blank">chart.js</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">chartjs
 </span><span class="sb">{
   "type": "line",
   "data": {
diff --git a/blog/2024/code-diff/index.html b/blog/2024/code-diff/index.html
index 53f8b10..16fec8d 100644
--- a/blog/2024/code-diff/index.html
+++ b/blog/2024/code-diff/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with code diff | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is how you can display code diffs"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/code-diff/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/highlight.js@11.9.0/styles/github.min.css" integrity="sha256-Oppd74ucMR5a5Dq96FxjEzGF7tTw2fZ/6ksAqDCM8GY=" crossorigin="anonymous" media="screen and (prefers-color-scheme: light)"> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/highlight.js@11.9.0/styles/github-dark.min.css" integrity="sha256-nyCNAiECsdDHrr/s2OQsp5l9XeY2ZJ0rMepjCT2AkBk=" crossorigin="anonymous" media="screen and (prefers-color-scheme: dark)"> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/diff2html@3.4.47/bundles/css/diff2html.min.css" integrity="sha256-IMBK4VNZp0ivwefSn51bswdsrhk0HoMTLc2GqFHFBXg=" crossorigin="anonymous"> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with code diff</h1> <p class="post-meta"> January 27, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/code"> <i class="fa-solid fa-hashtag fa-sm"></i> code</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>You can display diff code by using the regular markdown syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">diff
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with code diff | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is how you can display code diffs"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/code-diff/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/highlight.js@11.9.0/styles/github.min.css" integrity="sha256-Oppd74ucMR5a5Dq96FxjEzGF7tTw2fZ/6ksAqDCM8GY=" crossorigin="anonymous" media="screen and (prefers-color-scheme: light)"> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/highlight.js@11.9.0/styles/github-dark.min.css" integrity="sha256-nyCNAiECsdDHrr/s2OQsp5l9XeY2ZJ0rMepjCT2AkBk=" crossorigin="anonymous" media="screen and (prefers-color-scheme: dark)"> <link defer rel="stylesheet" href="https://cdn.jsdelivr.net/npm/diff2html@3.4.47/bundles/css/diff2html.min.css" integrity="sha256-IMBK4VNZp0ivwefSn51bswdsrhk0HoMTLc2GqFHFBXg=" crossorigin="anonymous"> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with code diff</h1> <p class="post-meta"> January 27, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/code"> <i class="fa-solid fa-hashtag fa-sm"></i> code</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>You can display diff code by using the regular markdown syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">diff
 </span><span class="gh">diff --git a/sample.js b/sample.js
 index 0000001..0ddf2ba
 </span><span class="gd">--- a/sample.js
diff --git a/blog/2024/echarts/index.html b/blog/2024/echarts/index.html
index e284fdc..f972315 100644
--- a/blog/2024/echarts/index.html
+++ b/blog/2024/echarts/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with echarts | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included echarts code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/echarts/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with echarts</h1> <p class="post-meta"> January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://echarts.apache.org/" rel="external nofollow noopener" target="_blank">echarts</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">echarts
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with echarts | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included echarts code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/echarts/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with echarts</h1> <p class="post-meta"> January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://echarts.apache.org/" rel="external nofollow noopener" target="_blank">echarts</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">echarts
 </span><span class="sb">{
   "title": {
     "text": "ECharts Getting Started Example"
diff --git a/blog/2024/geojson-map/index.html b/blog/2024/geojson-map/index.html
index 59730c3..12b6b2d 100644
--- a/blog/2024/geojson-map/index.html
+++ b/blog/2024/geojson-map/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with geojson | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included geojson code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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fa-sm"></i> maps</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://geojson.org/" rel="external nofollow noopener" target="_blank">geojson</a> code. The support is provided thanks to <a href="https://leafletjs.com/" rel="external nofollow noopener" target="_blank">Leaflet</a>. To create your own visualization, go to <a href="https://geojson.io/" rel="external nofollow noopener" target="_blank">geojson.io</a>.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">geojson
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with geojson | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included geojson code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with geojson</h1> <p class="post-meta"> January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>   <a href="/blog/tag/maps"> <i class="fa-solid fa-hashtag fa-sm"></i> maps</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://geojson.org/" rel="external nofollow noopener" target="_blank">geojson</a> code. The support is provided thanks to <a href="https://leafletjs.com/" rel="external nofollow noopener" target="_blank">Leaflet</a>. To create your own visualization, go to <a href="https://geojson.io/" rel="external nofollow noopener" target="_blank">geojson.io</a>.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">geojson
 </span><span class="sb">{
   "type": "FeatureCollection",
   "features": [
diff --git a/blog/2024/index.html b/blog/2024/index.html
index 67431d4..ece704d 100644
--- a/blog/2024/index.html
+++ b/blog/2024/index.html
@@ -1 +1 @@
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aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> 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measurements with multilevel modeling</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/advanced-images/">a post with advanced image components</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/vega-lite/">a post with vega lite</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/geojson-map/">a post with geojson</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/echarts/">a post with echarts</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/chartjs/">a post with chart.js</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 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class="post-header"> <h1 class="post-title"> <i class="fa-solid fa-calendar fa-sm"></i> 2024</h1> <p class="post-description">an archive of posts from this year</p> </header> <article> <div class="table-responsive"> <table class="table table-sm table-borderless"> <tr> <th scope="row">Feb 20, 2024</th> <td> <a class="post-link" href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</a> </td> </tr> <tr> <th scope="row">Feb 06, 2024</th> <td> <a class="post-link" href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">Beyond the mean: embracing uncertainty in measurements with multilevel modeling</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/advanced-images/">a post with advanced image components</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/vega-lite/">a post with vega lite</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/geojson-map/">a post with geojson</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/echarts/">a post with echarts</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/chartjs/">a post with chart.js</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 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diff --git a/blog/2024/vega-lite/index.html b/blog/2024/vega-lite/index.html
index 3cafe74..4890170 100644
--- a/blog/2024/vega-lite/index.html
+++ b/blog/2024/vega-lite/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with vega lite | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included vega lite code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with vega lite</h1> <p class="post-meta"> January 27, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://vega.github.io/vega-lite/" rel="external nofollow noopener" target="_blank">vega lite</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">vega_lite
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> a post with vega lite | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="this is what included vega lite code could look like"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/blog/2024/vega-lite/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">a post with vega lite</h1> <p class="post-meta"> January 27, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </header> <article class="post-content"> <div id="markdown-content"> <p>This is an example post with some <a href="https://vega.github.io/vega-lite/" rel="external nofollow noopener" target="_blank">vega lite</a> code.</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">vega_lite
 </span><span class="sb">{
   "$schema": "https://vega.github.io/schema/vega-lite/v5.json",
   "description": "A dot plot showing each movie in the database, and the difference from the average movie rating. The display is sorted by year to visualize everything in sequential order. The graph is for all Movies before 2019.",
diff --git a/blog/category/external-services/index.html b/blog/category/external-services/index.html
index dbcf25d..6ecf7db 100644
--- a/blog/category/external-services/index.html
+++ b/blog/category/external-services/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> external-services | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/blog/category/sample-posts/index.html b/blog/category/sample-posts/index.html
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scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/chartjs/">a post with chart.js</a> </td> </tr> <tr> <th scope="row">Dec 12, 2023</th> <td> <a class="post-link" href="/blog/2023/tikzjax/">a post with TikZJax</a> </td> </tr> <tr> <th scope="row">Jul 12, 2023</th> <td> <a class="post-link" href="/blog/2023/post-bibliography/">a post with bibliography</a> </td> </tr> <tr> <th scope="row">Jul 04, 2023</th> <td> <a class="post-link" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </td> </tr> <tr> <th scope="row">May 12, 2023</th> <td> <a class="post-link" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/audios/">a post with audios</a> </td> </tr> <tr> <th scope="row">Apr 24, 2023</th> <td> <a class="post-link" href="/blog/2023/videos/">a post with videos</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/table-of-contents/">a post with table of contents</a> </td> </tr> <tr> <th scope="row">Dec 10, 2022</th> <td> <a class="post-link" href="/blog/2022/giscus-comments/">a post with giscus comments</a> </td> </tr> <tr> <th scope="row">Sep 28, 2020</th> <td> <a class="post-link" href="/blog/2020/github-metadata/">a post with github metadata</a> </td> </tr> <tr> <th scope="row">Sep 28, 2020</th> <td> <a class="post-link" href="/blog/2020/twitter/">a post with twitter</a> </td> </tr> <tr> <th scope="row">Oct 20, 2015</th> <td> <a class="post-link" href="/blog/2015/disqus-comments/">a post with disqus comments</a> </td> </tr> <tr> <th scope="row">Oct 20, 2015</th> <td> <a class="post-link" href="/blog/2015/math/">a post with math</a> </td> </tr> <tr> <th scope="row">Jul 15, 2015</th> <td> <a class="post-link" href="/blog/2015/code/">a post with code</a> </td> </tr> <tr> <th scope="row">May 15, 2015</th> <td> <a class="post-link" href="/blog/2015/images/">a post with images</a> </td> </tr> <tr> <th scope="row">Mar 15, 2015</th> <td> <a class="post-link" href="/blog/2015/formatting-and-links/">a post with formatting and links</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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class="post-list"> <li> <h3> <a class="post-title" href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</a> <svg width="2rem" height="2rem" viewbox="0 0 40 40" xmlns="http://www.w3.org/2000/svg"> <path d="M17 13.5v6H5v-12h6m3-3h6v6m0-6-9 9" class="icon_svg-stroke" stroke="#999" stroke-width="1.5" fill="none" fill-rule="evenodd" stroke-linecap="round" stroke-linejoin="round"></path> </svg> </h3> <p></p> <p class="post-meta"> 7 min read   ·   February 20, 2024   ·   medium.com </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a> </p> </li> <li> <h3> <a class="post-title" 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class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" href="/blog/2024/geojson-map/">a post with geojson</a> </h3> <p>this is what included geojson code could look like</p> <p class="post-meta"> 1 min read   ·   January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>   <a href="/blog/tag/maps"> <i class="fa-solid fa-hashtag fa-sm"></i> maps</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2024/echarts/">a post with echarts</a> </h3> <p>this is what included echarts code could look like</p> <p class="post-meta"> 1 min read   ·   January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2024/chartjs/">a post with chart.js</a> </h3> <p>this is what included chart.js code could look like</p> <p class="post-meta"> 2 min read   ·   January 26, 2024 </p> <p class="post-tags"> <a href="/blog/2024"> <i class="fa-solid fa-calendar fa-sm"></i> 2024 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/charts"> <i class="fa-solid fa-hashtag fa-sm"></i> charts</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/tikzjax/">a post with TikZJax</a> </h3> <p>this is what included TikZ code could look like</p> <p class="post-meta"> 1 min read   ·   December 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/post-bibliography/">a post with bibliography</a> </h3> <p>an example of a blog post with bibliography</p> <p class="post-meta"> 1 min read   ·   July 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/bib"> <i class="fa-solid fa-hashtag fa-sm"></i> bib</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid 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diff --git a/blog/page/3/index.html b/blog/page/3/index.html
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class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </h3> <p>an example of a blog post with jupyter notebook</p> <p class="post-meta"> 2 min read   ·   July 04, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/jupyter"> <i class="fa-solid fa-hashtag fa-sm"></i> jupyter</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </h3> <p>an example of a blog post with custom blockquotes</p> <p class="post-meta"> 3 min read   ·   May 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/blockquotes"> <i class="fa-solid fa-hashtag fa-sm"></i> blockquotes</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </h3> <p>an example of a blog post with table of contents on a sidebar</p> <p class="post-meta"> 3 min read   ·   April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>   <a href="/blog/tag/sidebar"> <i class="fa-solid fa-hashtag fa-sm"></i> sidebar</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/audios/">a post with audios</a> </h3> <p>this is what included audios could look like</p> <p class="post-meta"> 1 min read   ·   April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/audios"> <i class="fa-solid fa-hashtag fa-sm"></i> audios</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/videos/">a post with videos</a> </h3> <p>this is what included videos could look like</p> <p class="post-meta"> 1 min read   ·   April 24, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/videos"> <i class="fa-solid fa-hashtag fa-sm"></i> videos</a>     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class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </h3> <p>an example of a blog post with jupyter notebook</p> <p class="post-meta"> 2 min read   ·   July 04, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/jupyter"> <i class="fa-solid fa-hashtag fa-sm"></i> jupyter</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </h3> <p>an example of a blog post with custom blockquotes</p> <p class="post-meta"> 3 min read   ·   May 12, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/blockquotes"> <i class="fa-solid fa-hashtag fa-sm"></i> blockquotes</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </h3> <p>an example of a blog post with table of contents on a sidebar</p> <p class="post-meta"> 3 min read   ·   April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>   <a href="/blog/tag/sidebar"> <i class="fa-solid fa-hashtag fa-sm"></i> sidebar</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/audios/">a post with audios</a> </h3> <p>this is what included audios could look like</p> <p class="post-meta"> 1 min read   ·   April 25, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/audios"> <i class="fa-solid fa-hashtag fa-sm"></i> audios</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/videos/">a post with videos</a> </h3> <p>this is what included videos could look like</p> <p class="post-meta"> 1 min read   ·   April 24, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/videos"> <i class="fa-solid fa-hashtag fa-sm"></i> videos</a>     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diff --git a/blog/page/4/index.html b/blog/page/4/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Blog - page 4 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </h3> <p>an example of how to use Bootstrap Tables</p> <p class="post-meta"> 3 min read   ·   March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/tables"> <i class="fa-solid fa-hashtag fa-sm"></i> tables</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/table-of-contents/">a post with table of contents</a> </h3> <p>an example of a blog post with table of contents</p> <p class="post-meta"> 3 min read   ·   March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2022/giscus-comments/">a post with giscus comments</a> </h3> <p>an example of a blog post with giscus comments</p> <p class="post-meta"> 1 min read   ·   December 10, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </li> <li> <h3> <a class="post-title" href="/assets/pdf/example_pdf.pdf">a post with redirect</a> </h3> <p>you can also redirect to assets like pdf</p> <p class="post-meta"> 1 min read 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Blog - page 4 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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class="header-bar"> <h1>al-folio</h1> <h2>Personal Website for Daniel Manrique-Castano</h2> </div> <div class="tag-category-list"> <ul class="p-0 m-0"> <li> <i class="fa-solid fa-hashtag fa-sm"></i> <a href="/blog/tag/formatting">formatting</a> </li> <p>•</p> <li> <i class="fa-solid fa-hashtag fa-sm"></i> <a href="/blog/tag/images">images</a> </li> <p>•</p> <li> <i class="fa-solid fa-hashtag fa-sm"></i> <a href="/blog/tag/links">links</a> </li> <p>•</p> <li> <i class="fa-solid fa-hashtag fa-sm"></i> <a href="/blog/tag/math">math</a> </li> <p>•</p> <li> <i class="fa-solid fa-hashtag fa-sm"></i> <a href="/blog/tag/code">code</a> </li> <p>•</p> <li> <i class="fa-solid fa-tag fa-sm"></i> <a href="/blog/category/blockquotes">blockquotes</a> </li> </ul> </div> <br> <div class="container featured-posts"> <div class="row row-cols-2"> <div class="card-item col"> <a href="/blog/2021/distill/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </h3> <p>an example of how to use Bootstrap Tables</p> <p class="post-meta"> 3 min read   ·   March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/tables"> <i class="fa-solid fa-hashtag fa-sm"></i> tables</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2023/table-of-contents/">a post with table of contents</a> </h3> <p>an example of a blog post with table of contents</p> <p class="post-meta"> 3 min read   ·   March 20, 2023 </p> <p class="post-tags"> <a href="/blog/2023"> <i class="fa-solid fa-calendar fa-sm"></i> 2023 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/toc"> <i class="fa-solid fa-hashtag fa-sm"></i> toc</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2022/giscus-comments/">a post with giscus comments</a> </h3> <p>an example of a blog post with giscus comments</p> <p class="post-meta"> 1 min read   ·   December 10, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </li> <li> <h3> <a class="post-title" href="/assets/pdf/example_pdf.pdf">a post with redirect</a> </h3> <p>you can also redirect to assets like pdf</p> <p class="post-meta"> 1 min read   ·   February 01, 2022 </p> <p class="post-tags"> <a href="/blog/2022"> <i class="fa-solid fa-calendar fa-sm"></i> 2022 </a> </p> </li> <li> <h3> <a class="post-title" href="/blog/2021/diagrams/">a post with diagrams</a> </h3> <p>an example of a blog post with diagrams</p> <p class="post-meta"> 1 min read   ·   July 04, 2021 </p> <p class="post-tags"> <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/diagrams"> <i class="fa-solid fa-hashtag fa-sm"></i> diagrams</a>   </p> </li> </ul> <nav aria-label="Blog page naviation"> <ul class="pagination pagination-lg justify-content-center"> <li class="page-item "> <a class="page-link" href="/blog/page/3/" tabindex="-1" aria-disabled="3">Newer</a> </li> <li class="page-item "> <a class="page-link" href="/blog/page/2/index.html" title="Blog - page 2">2</a> </li> <li class="page-item "> <a class="page-link" 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class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a distill-style blog post</h3> <p class="card-text">an example of a distill-style blog post and main elements</p> <p class="post-meta"> 8 min read   ·   <a href="/blog/2021"> <i class="fa-solid fa-calendar fa-sm"></i> 2021 </a> </p> </div> </div> </div> </div> </a> </div> <div class="card-item col"> <a href="/blog/2015/code/"> <div class="card hoverable"> <div class="row g-0"> <div class="col-md-12"> <div class="card-body"> <div class="float-right"> <i class="fa-solid fa-thumbtack fa-xs"></i> </div> <h3 class="card-title text-lowercase">a post with code</h3> <p class="card-text">an example of a blog post with some code</p> <p class="post-meta"> 4 min read   ·   <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a> </p> </div> </div> </div> </div> </a> </div> </div> </div> <hr> <ul class="post-list"> <li> <h3> <a class="post-title" 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class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/comments"> <i class="fa-solid fa-hashtag fa-sm"></i> comments</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   <a href="/blog/category/external-services"> <i class="fa-solid fa-tag fa-sm"></i> external-services</a>   </p> </li> <li> <h3> <a class="post-title" href="/blog/2015/math/">a post with math</a> </h3> <p>an example of a blog post with some math</p> <p class="post-meta"> 1 min read   ·   October 20, 2015 </p> <p class="post-tags"> <a href="/blog/2015"> <i class="fa-solid fa-calendar fa-sm"></i> 2015 </a>   ·   <a href="/blog/tag/formatting"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</a>   <a href="/blog/tag/math"> <i class="fa-solid fa-hashtag fa-sm"></i> math</a>     ·   <a href="/blog/category/sample-posts"> <i class="fa-solid fa-tag fa-sm"></i> sample-posts</a>   </p> </li> </ul> <nav aria-label="Blog page naviation"> <ul 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diff --git a/blog/page/6/index.html b/blog/page/6/index.html
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diff --git a/blog/tag/audios/index.html b/blog/tag/audios/index.html
index 475be51..1ce097b 100644
--- a/blog/tag/audios/index.html
+++ b/blog/tag/audios/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> audios | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/blog/tag/bib/index.html b/blog/tag/bib/index.html
index a91e68c..da64aff 100644
--- a/blog/tag/bib/index.html
+++ b/blog/tag/bib/index.html
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diff --git a/blog/tag/blockquotes/index.html b/blog/tag/blockquotes/index.html
index 0bd8fd3..91cc39d 100644
--- a/blog/tag/blockquotes/index.html
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diff --git a/blog/tag/charts/index.html b/blog/tag/charts/index.html
index 1a127ed..bc41195 100644
--- a/blog/tag/charts/index.html
+++ b/blog/tag/charts/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/code/index.html b/blog/tag/code/index.html
index 2dde3d0..bc27ba3 100644
--- a/blog/tag/code/index.html
+++ b/blog/tag/code/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/comments/index.html b/blog/tag/comments/index.html
index aecec9a..0bed757 100644
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+++ b/blog/tag/comments/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/diagrams/index.html b/blog/tag/diagrams/index.html
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--- a/blog/tag/diagrams/index.html
+++ b/blog/tag/diagrams/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/distill/index.html b/blog/tag/distill/index.html
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@@ -1 +1 @@
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diff --git a/blog/tag/formatting/index.html b/blog/tag/formatting/index.html
index 41ef7af..9621a82 100644
--- a/blog/tag/formatting/index.html
+++ b/blog/tag/formatting/index.html
@@ -1 +1 @@
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data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</h1> <p class="post-description">an archive of posts with this tag</p> </header> <article> <div class="table-responsive"> <table class="table table-sm table-borderless"> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/advanced-images/">a post with advanced image components</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/vega-lite/">a post with vega lite</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/geojson-map/">a post with geojson</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/echarts/">a post with echarts</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/chartjs/">a post with chart.js</a> </td> </tr> <tr> <th scope="row">Dec 12, 2023</th> <td> <a class="post-link" href="/blog/2023/tikzjax/">a post with TikZJax</a> </td> </tr> <tr> <th scope="row">Jul 12, 2023</th> <td> <a class="post-link" href="/blog/2023/post-bibliography/">a post with bibliography</a> </td> </tr> <tr> <th scope="row">Jul 04, 2023</th> <td> <a class="post-link" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </td> </tr> <tr> <th scope="row">May 12, 2023</th> <td> <a class="post-link" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/audios/">a post with audios</a> </td> </tr> <tr> <th scope="row">Apr 24, 2023</th> <td> <a class="post-link" href="/blog/2023/videos/">a post with videos</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/table-of-contents/">a post with table of contents</a> </td> </tr> <tr> <th scope="row">Jul 04, 2021</th> <td> <a class="post-link" href="/blog/2021/diagrams/">a post with diagrams</a> </td> </tr> <tr> <th scope="row">May 22, 2021</th> <td> <a class="post-link" href="/blog/2021/distill/">a distill-style blog post</a> </td> </tr> <tr> <th scope="row">Sep 28, 2020</th> <td> <a class="post-link" href="/blog/2020/twitter/">a post with twitter</a> </td> </tr> <tr> <th scope="row">Oct 20, 2015</th> <td> <a class="post-link" href="/blog/2015/math/">a post with math</a> </td> </tr> <tr> <th scope="row">Jul 15, 2015</th> <td> <a class="post-link" href="/blog/2015/code/">a post with code</a> </td> </tr> <tr> <th scope="row">May 15, 2015</th> <td> <a class="post-link" href="/blog/2015/images/">a post with images</a> </td> </tr> <tr> <th scope="row">Mar 15, 2015</th> <td> <a class="post-link" href="/blog/2015/formatting-and-links/">a post with formatting and links</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title"> <i class="fa-solid fa-hashtag fa-sm"></i> formatting</h1> <p class="post-description">an archive of posts with this tag</p> </header> <article> <div class="table-responsive"> <table class="table table-sm table-borderless"> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/advanced-images/">a post with advanced image components</a> </td> </tr> <tr> <th scope="row">Jan 27, 2024</th> <td> <a class="post-link" href="/blog/2024/vega-lite/">a post with vega lite</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/geojson-map/">a post with geojson</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/echarts/">a post with echarts</a> </td> </tr> <tr> <th scope="row">Jan 26, 2024</th> <td> <a class="post-link" href="/blog/2024/chartjs/">a post with chart.js</a> </td> </tr> <tr> <th scope="row">Dec 12, 2023</th> <td> <a class="post-link" href="/blog/2023/tikzjax/">a post with TikZJax</a> </td> </tr> <tr> <th scope="row">Jul 12, 2023</th> <td> <a class="post-link" href="/blog/2023/post-bibliography/">a post with bibliography</a> </td> </tr> <tr> <th scope="row">Jul 04, 2023</th> <td> <a class="post-link" href="/blog/2023/jupyter-notebook/">a post with jupyter notebook</a> </td> </tr> <tr> <th scope="row">May 12, 2023</th> <td> <a class="post-link" href="/blog/2023/custom-blockquotes/">a post with custom blockquotes</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/sidebar-table-of-contents/">a post with table of contents on a sidebar</a> </td> </tr> <tr> <th scope="row">Apr 25, 2023</th> <td> <a class="post-link" href="/blog/2023/audios/">a post with audios</a> </td> </tr> <tr> <th scope="row">Apr 24, 2023</th> <td> <a class="post-link" href="/blog/2023/videos/">a post with videos</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/tables/">displaying beautiful tables with Bootstrap Tables</a> </td> </tr> <tr> <th scope="row">Mar 20, 2023</th> <td> <a class="post-link" href="/blog/2023/table-of-contents/">a post with table of contents</a> </td> </tr> <tr> <th scope="row">Jul 04, 2021</th> <td> <a class="post-link" href="/blog/2021/diagrams/">a post with diagrams</a> </td> </tr> <tr> <th scope="row">May 22, 2021</th> <td> <a class="post-link" href="/blog/2021/distill/">a distill-style blog post</a> </td> </tr> <tr> <th scope="row">Sep 28, 2020</th> <td> <a class="post-link" href="/blog/2020/twitter/">a post with twitter</a> </td> </tr> <tr> <th scope="row">Oct 20, 2015</th> <td> <a class="post-link" href="/blog/2015/math/">a post with math</a> </td> </tr> <tr> <th scope="row">Jul 15, 2015</th> <td> <a class="post-link" href="/blog/2015/code/">a post with code</a> </td> </tr> <tr> <th scope="row">May 15, 2015</th> <td> <a class="post-link" href="/blog/2015/images/">a post with images</a> </td> </tr> <tr> <th scope="row">Mar 15, 2015</th> <td> <a class="post-link" href="/blog/2015/formatting-and-links/">a post with formatting and links</a> </td> </tr> </table> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/blog/tag/images/index.html b/blog/tag/images/index.html
index 4939d20..e327447 100644
--- a/blog/tag/images/index.html
+++ b/blog/tag/images/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> images | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> images | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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diff --git a/blog/tag/jupyter/index.html b/blog/tag/jupyter/index.html
index f7fbe3b..c0ad78f 100644
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+++ b/blog/tag/jupyter/index.html
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diff --git a/blog/tag/links/index.html b/blog/tag/links/index.html
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@@ -1 +1 @@
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diff --git a/blog/tag/maps/index.html b/blog/tag/maps/index.html
index 6f7a0d3..b035395 100644
--- a/blog/tag/maps/index.html
+++ b/blog/tag/maps/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/math/index.html b/blog/tag/math/index.html
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+++ b/blog/tag/math/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/metadata/index.html b/blog/tag/metadata/index.html
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@@ -1 +1 @@
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diff --git a/blog/tag/sidebar/index.html b/blog/tag/sidebar/index.html
index 7d6845b..d571bd8 100644
--- a/blog/tag/sidebar/index.html
+++ b/blog/tag/sidebar/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/tables/index.html b/blog/tag/tables/index.html
index 224c936..e931457 100644
--- a/blog/tag/tables/index.html
+++ b/blog/tag/tables/index.html
@@ -1 +1 @@
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diff --git a/blog/tag/toc/index.html b/blog/tag/toc/index.html
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diff --git a/blog/tag/videos/index.html b/blog/tag/videos/index.html
index 0b0d584..39b3549 100644
--- a/blog/tag/videos/index.html
+++ b/blog/tag/videos/index.html
@@ -1 +1 @@
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diff --git a/cv/index.html b/cv/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> CV | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="My academic resume/CV"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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"> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item active"> <a class="nav-link" href="/cv/">CV <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="row"> <div class="col-sm-3"> <nav id="toc-sidebar" class="sticky-top"></nav> </div> <div class="col-sm-9"> <div class="post"> <header class="post-header"> <h1 class="post-title"> CV <a href="/assets/pdf/Daniel%20Manrique-CV.pdf" target="_blank" rel="noopener noreferrer" class="float-right"><i class="fa-solid fa-file-pdf"></i></a> </h1> <p class="post-description">My academic resume/CV</p> </header> <article> <div class="cv"> <a class="anchor" id="basics"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Basics</h3> <div> <table class="table table-cv table-sm table-borderless table-responsive table-cv-map"> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Name</b> </td> <td class="p-1 pl-2 font-weight-light text"> Daniel Manrique-Castano </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Label</b> </td> <td class="p-1 pl-2 font-weight-light text"> Neuroscientists / Data scientist </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Email</b> </td> <td class="p-1 pl-2 font-weight-light text"> <a href="mailto:danielmanriquecastano@gmail.com" target="_blank">danielmanriquecastano@gmail.com</a> </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Linkedin</b> </td> <td class="p-1 pl-2 font-weight-light text"> https://www.linkedin.com/in/danielmanriquecastano/ </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Url</b> </td> <td class="p-1 pl-2 font-weight-light text"> <a href="https://daniel-manrique.github.io/" target="_blank" rel="noopener noreferrer">https://daniel-manrique.github.io/</a> </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Summary</b> </td> <td class="p-1 pl-2 font-weight-light text"> I am a neuroscientist focused on understanding glial reactivity following brain injury. To address these issues, I rely on image processing tools and statistical modeling using Python and R. I am an ardent advocate for open and reproducible science, and a dedcitaed educator in good research practices and research data managemen. Science communication and my recent foray into project management complement my skill set. </td> </tr> </table> </div> </div> <a class="anchor" id="work"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Work</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2024.03 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.usbbog.edu.co/facultades/facultad-de-psicologia/doctorado-en-neurociencia-aplicada-y-comportamiento/" rel="external nofollow noopener" target="_blank">Lecturer</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Universidad San Buenaventura, Bogotá, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Lecturer in the PhD program in Applied Neuroscience and Behavior. Research design, research data management, data analysis, scientific writing</h6> <ul class="items"> <li> <span class="item">Research design, RDM, Data analysis</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2020.12 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://elalilab.com/" rel="external nofollow noopener" target="_blank">Postdoctoral fellow</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Univeristy Laval, Quebec, Canada</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on pericyte reactivity and brain remodeling following cerebral ischemia</h6> <ul class="items"> <li> <span class="item">Pericyte reactivity following ischeia, Point pattern analysis, Topological data analysis</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10 - 2020.10 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://neurosciencelab.uk-essen.de/" rel="external nofollow noopener" target="_blank">Doctoral researcher</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Essen University Hospital, Essen, Germany</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on extracellular matrix, neuroglial and immune response in mouse model of cerebral ischemia</h6> <ul class="items"> <li> <span class="item">Neuroglial reactivity following ischeia, Extracellular matrix</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2012.01 - 2013.01 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="">Neuropsychologist</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Hospital Departamental del Valle, Cali, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Neuropsychological assessment to hospitalized and outpatients in the neurosurgery unit</h6> <ul class="items"> <li> <span class="item">Neuropsychological assesment</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2012.01 - 2014.06 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="">Research Assistant</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana, Cali, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on cortical and transcallosal neurCerebral ischemia</h6> <ul class="items"> <li> <span class="item">Cerebral ischemia</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="education"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Education</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10 - 2020.10 </span> </td> </tr> <tr> <td> <p class="location"> <i class="fa-solid fa-location-dot iconlocation"></i> Bochum, Germany </p> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.ruhr-uni-bochum.de/igsn/" rel="external nofollow noopener" target="_blank">PhD</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">International Graduate School of Neuroscience, Ruhr Univeristy Bochum</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Neuroscience</h6> <ul class="items"> <li> <span class="item">Cellular neuroscience, neuropathology</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2009.01 - 2013.05 </span> </td> </tr> <tr> <td> <p class="location"> <i class="fa-solid fa-location-dot iconlocation"></i> Cali, Colombia </p> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.javerianacali.edu.co/" rel="external nofollow noopener" target="_blank">Bachelor</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Psychology</h6> <ul class="items"> <li> <span class="item">Psychology</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="volunteer"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Volunteer</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2020.01 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://academiahananpacha.com/" rel="external nofollow noopener" target="_blank">Member</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Hanan Pacha Academy</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Member of this association focused on science education in schools and institutions in low-income Latin-american countries</h6> <ul class="items"> <li> <span class="item">Porject management, Science communication, teaching</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2009.05 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://escueladeastronomiadecali.com/" rel="external nofollow noopener" target="_blank">President / member</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">School of Astronomy of Cali</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">President (2010-20121) and member of this association focused on the dissemination of astronomy and other natural sciences in Colombia.</h6> <ul class="items"> <li> <span class="item">Porject management, Science communication, teaching</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="awards"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Awards</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2022.05.01 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://frq.gouv.qc.ca/" rel="external nofollow noopener" target="_blank">Postdoctoral fellowship</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fond de recherche du Québec</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Competitive postdoctoral fellowship to perform research on the effects of KLF4 in pericyte reactivity following brain injury</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10.08 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://frq.gouv.qc.ca/" rel="external nofollow noopener" target="_blank">Doctoral scholarship</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">International Graduate School of Neuroscience</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Competitive doctoral scholarship to perform the doctoral program in neuroscience at the International Graduate School of Neuroscience (IGSN)</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2013.05.18 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.javeriana.edu.co/estudia-en-la-javeriana/becas-excelencia-academica" rel="external nofollow noopener" target="_blank">Order of Javeriano Academic Merit</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Honor/meritorious degree after completing the bachelor program in Psychology</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2013.2014 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://www.lacienciaparatodos.mx/" rel="external nofollow noopener" target="_blank">First place in Biology essay</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fondo de Cultura Económica (Mexico)</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">First place in Biology essay in the XIII National &amp; V Iberoamerican contest</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2011.2012 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://www.lacienciaparatodos.mx/" rel="external nofollow noopener" target="_blank">First place in Physics essay</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fondo de Cultura Económica (Mexico)</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">First place in Physics essay in the XII National &amp; IV Iberoamerican contest</h6> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="certificates"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Certificates</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-location-dot"></i> </td> <td colspan="1" class="list-group-category"> <a href="https://example.com" rel="external nofollow noopener" target="_blank">Data Science</a> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IBM</b> </td> <td class="list-group-name">2024-02-03</td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="publications"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Publications</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2024.03.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://doi.org/10.1007/s00018-021-03861-3" rel="external nofollow noopener" target="_blank">Inhibitory control in neuronal networks relies on the extracellular matrix integrity</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Cellular and Molecular Life Sciences</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">We show that the brain’s ECM preserves the balanced state of neuronal networks by supporting inhibitory control via inhibitory synapse stabilization, which expands the current understanding of brain activity regulation.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2024.03.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">Tenascin-{C} restricts reactive astrogliosis in the ischemic brain</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Annalen der Physik</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">We show that TnC plays a central role in restraining post-ischemic astrogliosis and regulating astrocyte-microglial interactions.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2021.07.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.sciencedirect.com/science/article/pii/S0889159120323667" rel="external nofollow noopener" target="_blank">Tenascin-C preserves microglia surveillance and restricts leukocyte and, more specifically, T-cell infiltration of the ischemic brain</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Brain, Behavior, and Immunity</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">In this artcile, we propose that the reduced microglia surveillance in TnC deficient mice favour leukocyte accumulation in the ischemic brain.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2019.04.16</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" rel="external nofollow noopener" target="_blank">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Matrix Biology</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Here, we show that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</h6> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="skills"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Skills</h3> <div> <div class="list-groups"> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">MCAO</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Cerebral ischemia</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">Rodent behavioral testing</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Motor function</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Cognitive funtion</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">Immunohistochemestry</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IF</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>ICC</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IHC</b> </td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="languages"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Languages</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">Spanish</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Native speaker</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">English</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>C1</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">French</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>B2</b> </td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="interests"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Interests</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-tag"></i> </td> <td colspan="1" class="list-group-category">Reading</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Popular science</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Historic novel</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Data Analysis</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-tag"></i> </td> <td colspan="1" class="list-group-category">Writing</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Popular science</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Essays</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Jornalistic chronicles</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-tag"></i> </td> <td colspan="1" class="list-group-category">Dancing</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Salsa</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Essays</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Journalistic chronicles</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-tag"></i> </td> <td colspan="1" class="list-group-category">History</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Museum visits</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>History</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Historical festivals</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Ruin visits</b> </td> </tr> </tbody> </table> </div> </div> </div> </div> </div> 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> CV | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="My academic resume/CV"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item active"> <a class="nav-link" href="/cv/">CV <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="row"> <div class="col-sm-3"> <nav id="toc-sidebar" class="sticky-top"></nav> </div> <div class="col-sm-9"> <div class="post"> <header class="post-header"> <h1 class="post-title"> CV <a href="/assets/pdf/Daniel%20Manrique-CV.pdf" target="_blank" rel="noopener noreferrer" class="float-right"><i class="fa-solid fa-file-pdf"></i></a> </h1> <p class="post-description">My academic resume/CV</p> </header> <article> <div class="cv"> <a class="anchor" id="basics"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Basics</h3> <div> <table class="table table-cv table-sm table-borderless table-responsive table-cv-map"> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Name</b> </td> <td class="p-1 pl-2 font-weight-light text"> Daniel Manrique-Castano </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Label</b> </td> <td class="p-1 pl-2 font-weight-light text"> Neuroscientists / Data scientist </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Email</b> </td> <td class="p-1 pl-2 font-weight-light text"> <a href="mailto:danielmanriquecastano@gmail.com" target="_blank">danielmanriquecastano@gmail.com</a> </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Linkedin</b> </td> <td class="p-1 pl-2 font-weight-light text"> https://www.linkedin.com/in/danielmanriquecastano/ </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Url</b> </td> <td class="p-1 pl-2 font-weight-light text"> <a href="https://daniel-manrique.github.io/" target="_blank" rel="noopener noreferrer">https://daniel-manrique.github.io/</a> </td> </tr> <tr> <td class="p-1 pr-2 font-weight-bold"> <b>Summary</b> </td> <td class="p-1 pl-2 font-weight-light text"> I am a neuroscientist focused on understanding glial reactivity following brain injury. To address these issues, I rely on image processing tools and statistical modeling using Python and R. I am an ardent advocate for open and reproducible science, and a dedcitaed educator in good research practices and research data managemen. Science communication and my recent foray into project management complement my skill set. </td> </tr> </table> </div> </div> <a class="anchor" id="work"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Work</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2024.03 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.usbbog.edu.co/facultades/facultad-de-psicologia/doctorado-en-neurociencia-aplicada-y-comportamiento/" rel="external nofollow noopener" target="_blank">Lecturer</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Universidad San Buenaventura, Bogotá, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Lecturer in the PhD program in Applied Neuroscience and Behavior. Research design, research data management, data analysis, scientific writing</h6> <ul class="items"> <li> <span class="item">Research design, RDM, Data analysis</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2020.12 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://elalilab.com/" rel="external nofollow noopener" target="_blank">Postdoctoral fellow</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Univeristy Laval, Quebec, Canada</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on pericyte reactivity and brain remodeling following cerebral ischemia</h6> <ul class="items"> <li> <span class="item">Pericyte reactivity following ischeia, Point pattern analysis, Topological data analysis</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10 - 2020.10 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://neurosciencelab.uk-essen.de/" rel="external nofollow noopener" target="_blank">Doctoral researcher</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Essen University Hospital, Essen, Germany</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on extracellular matrix, neuroglial and immune response in mouse model of cerebral ischemia</h6> <ul class="items"> <li> <span class="item">Neuroglial reactivity following ischeia, Extracellular matrix</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2012.01 - 2013.01 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="">Neuropsychologist</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Hospital Departamental del Valle, Cali, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Neuropsychological assessment to hospitalized and outpatients in the neurosurgery unit</h6> <ul class="items"> <li> <span class="item">Neuropsychological assesment</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2012.01 - 2014.06 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="">Research Assistant</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana, Cali, Colombia</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Research on cortical and transcallosal neurCerebral ischemia</h6> <ul class="items"> <li> <span class="item">Cerebral ischemia</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="education"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Education</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10 - 2020.10 </span> </td> </tr> <tr> <td> <p class="location"> <i class="fa-solid fa-location-dot iconlocation"></i> Bochum, Germany </p> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.ruhr-uni-bochum.de/igsn/" rel="external nofollow noopener" target="_blank">PhD</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">International Graduate School of Neuroscience, Ruhr Univeristy Bochum</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Neuroscience</h6> <ul class="items"> <li> <span class="item">Cellular neuroscience, neuropathology</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2009.01 - 2013.05 </span> </td> </tr> <tr> <td> <p class="location"> <i class="fa-solid fa-location-dot iconlocation"></i> Cali, Colombia </p> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.javerianacali.edu.co/" rel="external nofollow noopener" target="_blank">Bachelor</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Psychology</h6> <ul class="items"> <li> <span class="item">Psychology</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="volunteer"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Volunteer</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2020.01 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://academiahananpacha.com/" rel="external nofollow noopener" target="_blank">Member</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Hanan Pacha Academy</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Member of this association focused on science education in schools and institutions in low-income Latin-american countries</h6> <ul class="items"> <li> <span class="item">Porject management, Science communication, teaching</span> </li> </ul> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2009.05 - 2024 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://escueladeastronomiadecali.com/" rel="external nofollow noopener" target="_blank">President / member</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">School of Astronomy of Cali</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">President (2010-20121) and member of this association focused on the dissemination of astronomy and other natural sciences in Colombia.</h6> <ul class="items"> <li> <span class="item">Porject management, Science communication, teaching</span> </li> </ul> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="awards"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Awards</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2022.05.01 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://frq.gouv.qc.ca/" rel="external nofollow noopener" target="_blank">Postdoctoral fellowship</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fond de recherche du Québec</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Competitive postdoctoral fellowship to perform research on the effects of KLF4 in pericyte reactivity following brain injury</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2014.10.08 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://frq.gouv.qc.ca/" rel="external nofollow noopener" target="_blank">Doctoral scholarship</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">International Graduate School of Neuroscience</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Competitive doctoral scholarship to perform the doctoral program in neuroscience at the International Graduate School of Neuroscience (IGSN)</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2013.05.18 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.javeriana.edu.co/estudia-en-la-javeriana/becas-excelencia-academica" rel="external nofollow noopener" target="_blank">Order of Javeriano Academic Merit</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Pontificia Universidad Javeriana</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Honor/meritorious degree after completing the bachelor program in Psychology</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2013.2014 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://www.lacienciaparatodos.mx/" rel="external nofollow noopener" target="_blank">First place in Biology essay</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fondo de Cultura Económica (Mexico)</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">First place in Biology essay in the XIII National &amp; V Iberoamerican contest</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px"> 2011.2012 </span> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="http://www.lacienciaparatodos.mx/" rel="external nofollow noopener" target="_blank">First place in Physics essay</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Fondo de Cultura Económica (Mexico)</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">First place in Physics essay in the XII National &amp; IV Iberoamerican contest</h6> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="certificates"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Certificates</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-location-dot"></i> </td> <td colspan="1" class="list-group-category"> <a href="https://example.com" rel="external nofollow noopener" target="_blank">Data Science</a> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IBM</b> </td> <td class="list-group-name">2024-02-03</td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="publications"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Publications</h3> <div> <ul class="card-text font-weight-light list-group list-group-flush"> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2024.03.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://doi.org/10.1007/s00018-021-03861-3" rel="external nofollow noopener" target="_blank">Inhibitory control in neuronal networks relies on the extracellular matrix integrity</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Cellular and Molecular Life Sciences</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">We show that the brain’s ECM preserves the balanced state of neuronal networks by supporting inhibitory control via inhibitory synapse stabilization, which expands the current understanding of brain activity regulation.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2024.03.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">Tenascin-{C} restricts reactive astrogliosis in the ischemic brain</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Annalen der Physik</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">We show that TnC plays a central role in restraining post-ischemic astrogliosis and regulating astrocyte-microglial interactions.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2021.07.01</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://www.sciencedirect.com/science/article/pii/S0889159120323667" rel="external nofollow noopener" target="_blank">Tenascin-C preserves microglia surveillance and restricts leukocyte and, more specifically, T-cell infiltration of the ischemic brain</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Brain, Behavior, and Immunity</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">In this artcile, we propose that the reduced microglia surveillance in TnC deficient mice favour leukocyte accumulation in the ischemic brain.</h6> </div> </div> </li> <li class="list-group-item"> <div class="row"> <div class="col-xs-2 cl-sm-2 col-md-2 text-center" style="width: 75px"> <table class="table-cv"> <tbody> <tr> <td> <span class="badge font-weight-bold danger-color-dark text-uppercase align-middle" style="min-width: 75px">2019.04.16</span> </td> </tr> </tbody> </table> </div> <div class="col-xs-10 cl-sm-10 col-md-10 mt-2 mt-md-0"> <h6 class="title font-weight-bold ml-1 ml-md-4"> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" rel="external nofollow noopener" target="_blank">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</a> </h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem">Matrix Biology</h6> <h6 class="ml-1 ml-md-4" style="font-size: 0.95rem; font-style: italic">Here, we show that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</h6> </div> </div> </li> </ul> </div> </div> <a class="anchor" id="skills"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Skills</h3> <div> <div class="list-groups"> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">MCAO</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Cerebral ischemia</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">Rodent behavioral testing</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Motor function</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Cognitive funtion</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6" title="Master"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class="fa-solid fa-hashtag"></i> </td> <td colspan="1" class="list-group-category">Immunohistochemestry</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IF</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>ICC</b> </td> </tr> <tr> <td></td> <td class="list-group-name"> <b>IHC</b> </td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="languages"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Languages</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">Spanish</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>Native speaker</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">English</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>C1</b> </td> </tr> </tbody> </table> </div> <div class="list-group col-md-6"> <table class="table-cv list-group-table"> <tbody> <tr> <td class="list-group-category-icon"> <i class=""></i> </td> <td colspan="1" class="list-group-category">French</td> </tr> <tr> <td></td> <td class="list-group-name"> <b>B2</b> </td> </tr> </tbody> </table> </div> </div> </div> </div> <a class="anchor" id="interests"></a> <div class="card mt-3 p-3"> <h3 class="card-title font-weight-medium">Interests</h3> <div> <div class="list-groups"> <div class="list-group col-md-6"> <table class="table-cv 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diff --git a/feed.xml b/feed.xml
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--- a/feed.xml
+++ b/feed.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><generator uri="https://jekyllrb.com/" version="4.3.3">Jekyll</generator><link href="https://daniel-manrique.github.io/feed.xml" rel="self" type="application/atom+xml"/><link href="https://daniel-manrique.github.io/" rel="alternate" type="text/html" hreflang="en"/><updated>2024-03-11T12:40:29+00:00</updated><id>https://daniel-manrique.github.io/feed.xml</id><title type="html">blank</title><subtitle>A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. </subtitle><entry><title type="html">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</title><link href="https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century/" rel="alternate" type="text/html" title="What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?"/><published>2024-02-20T15:51:27+00:00</published><updated>2024-02-20T15:51:27+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century/"><![CDATA[]]></content><author><name></name></author></entry><entry><title type="html">Beyond the mean: embracing uncertainty in measurements with multilevel modeling</title><link href="https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling/" rel="alternate" type="text/html" title="Beyond the mean: embracing uncertainty in measurements with multilevel modeling"/><published>2024-02-06T12:40:42+00:00</published><updated>2024-02-06T12:40:42+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling/"><![CDATA[]]></content><author><name></name></author></entry><entry><title type="html">a post with code diff</title><link href="https://daniel-manrique.github.io/blog/2024/code-diff/" rel="alternate" type="text/html" title="a post with code diff"/><published>2024-01-27T19:22:00+00:00</published><updated>2024-01-27T19:22:00+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/code-diff</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/code-diff/"><![CDATA[<p>You can display diff code by using the regular markdown syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">diff
+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><generator uri="https://jekyllrb.com/" version="4.3.3">Jekyll</generator><link href="https://daniel-manrique.github.io/feed.xml" rel="self" type="application/atom+xml"/><link href="https://daniel-manrique.github.io/" rel="alternate" type="text/html" hreflang="en"/><updated>2024-03-11T12:51:37+00:00</updated><id>https://daniel-manrique.github.io/feed.xml</id><title type="html">blank</title><subtitle>A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. </subtitle><entry><title type="html">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</title><link href="https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century/" rel="alternate" type="text/html" title="What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?"/><published>2024-02-20T15:51:27+00:00</published><updated>2024-02-20T15:51:27+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century/"><![CDATA[]]></content><author><name></name></author></entry><entry><title type="html">Beyond the mean: embracing uncertainty in measurements with multilevel modeling</title><link href="https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling/" rel="alternate" type="text/html" title="Beyond the mean: embracing uncertainty in measurements with multilevel modeling"/><published>2024-02-06T12:40:42+00:00</published><updated>2024-02-06T12:40:42+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling/"><![CDATA[]]></content><author><name></name></author></entry><entry><title type="html">a post with code diff</title><link href="https://daniel-manrique.github.io/blog/2024/code-diff/" rel="alternate" type="text/html" title="a post with code diff"/><published>2024-01-27T19:22:00+00:00</published><updated>2024-01-27T19:22:00+00:00</updated><id>https://daniel-manrique.github.io/blog/2024/code-diff</id><content type="html" xml:base="https://daniel-manrique.github.io/blog/2024/code-diff/"><![CDATA[<p>You can display diff code by using the regular markdown syntax:</p> <div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="p">```</span><span class="nl">diff
 </span><span class="gh">diff --git a/sample.js b/sample.js
 index 0000001..0ddf2ba
 </span><span class="gd">--- a/sample.js
diff --git a/index.html b/index.html
index d7ee27a..5927b97 100644
--- a/index.html
+++ b/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. "> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item active"> <a class="nav-link" href="/">About <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </h1> <p class="desc"><a href="#">Neuroscientist / Data Scientists</a>.</p> </header> <article> <div class="profile float-right"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/prof_pic-480.webp 480w,/assets/img/prof_pic-800.webp 800w,/assets/img/prof_pic-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/prof_pic.jpg?b20505d9cbb7dd9396c7c6425236a46a" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="prof_pic.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Laboratory of Neurovascular Interactions</p> <p>Université Laval,</p> <p>Quebec, Canada</p> </div> </div> <div class="clearfix"> <p>I am a neuroscientist focused on understanding glial reactivity following brain injury. While doing my doctoral studies at the <a href="https://www.ruhr-uni-bochum.de/igsn/" rel="external nofollow noopener" target="_blank">International Graduate School of Neuroscience</a> at the Ruhr-University Bochum, Germany, I realized that traditional analysis methodologies were not suitable to solve my research questions. Thus, I started to educate myself in statistical modeling using probabilistic approaches (Bayesian statistics) and developed a strong data science-based perspective. My current interests lies in unraveling the intricacies of brain scarring and recovery. I leverage a blend of modeling-based data analysis, machine learning, and image processing to dissect these complex processes.</p> <p>In addition, my foray into data analysis has led to the development of unbiased, automated image analysis techniques using Python and machine learning. These <a href="https://medium.com/@damanrique" rel="external nofollow noopener" target="_blank">approaches</a> are particularly beneficial for researchers grappling with traditional, manual cell counting methods.</p> <p>Finally, I am an ardent advocate for open and reproducible science. I firmly believe this approach is essential for maintaining quality control in scientific literature and ensuring effective oversight of scientific outputs. If my expertise aligns with your program’s goals, please feel free to <a href="mailto:danielmanriquecastano@gmail.com">contact me</a>.</p> </div> <h2> <a href="/news/" style="color: inherit">news</a> </h2> <div class="news"> <div class="table-responsive" style="max-height: 60vw"> <table class="table table-sm table-borderless"> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> This website is still <strong>under construction</strong>. Please forgive the broken/misguided links. </td> </tr> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> I’ll start lecturing on research design and data management for the doctoral program in <strong>Applied and Behavioral Neuroscience</strong> at Universidad San Buenaventura, Bogotá (Colombia). </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> I wrote about the Dana Farber <a href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc" rel="external nofollow noopener" target="_blank">scientific missconduct scandal</a>. </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> I open my account on Medium and published my first <a href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736" rel="external nofollow noopener" target="_blank">blog post</a>. </td> </tr> </table> </div> </div> <h2> <a href="/blog/" style="color: inherit">latest posts</a> </h2> <div class="news"> <div class="table-responsive" style="max-height: 60vw"> <table class="table table-sm table-borderless"> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> <a class="news-title" href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</a> <svg width="2rem" height="2rem" viewbox="0 0 40 40" xmlns="http://www.w3.org/2000/svg"> <path d="M17 13.5v6H5v-12h6m3-3h6v6m0-6-9 9" class="icon_svg-stroke" stroke="#999" stroke-width="1.5" fill="none" fill-rule="evenodd" stroke-linecap="round" stroke-linejoin="round"></path> </svg> </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> <a class="news-title" href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">Beyond the mean: embracing uncertainty in measurements with multilevel modeling</a> <svg width="2rem" height="2rem" viewbox="0 0 40 40" xmlns="http://www.w3.org/2000/svg"> <path d="M17 13.5v6H5v-12h6m3-3h6v6m0-6-9 9" class="icon_svg-stroke" stroke="#999" stroke-width="1.5" fill="none" fill-rule="evenodd" stroke-linecap="round" stroke-linejoin="round"></path> </svg> </td> </tr> <tr> <th scope="row" style="width: 20%">Jan 27, 2024</th> <td> <a class="news-title" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> </table> </div> </div> <h2> <a href="/publications/" style="color: inherit">selected publications</a> </h2> <div class="publications"> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_topological_2018" class="col-sm-8"> <div class="title">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Dec 208 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Topological%20remodeling%20of%20cortical%20perineuronal%20ne" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2018.08.001" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Tyk-4Ss8FVUC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-32-4285F4?logo=googlescholar&amp;labelColor=beige" alt="32 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Despite the crucial role of perineuronal nets (PNNs) in neural plasticity and neurological disorders, their ultrastructural organization remains largely unresolved. We have developed a novel approach combining superresolution structured illumination microscopy (SR-SIM) and mathematical reconstruction that allows for quantitative analysis of PNN topology. Since perineuronal matrix is capable to restrict neural plasticity but at the same time is necessary to maintain synapses, we hypothesized that a beneficial post stroke recovery requires a reversible loosening of PNNs. Our results indicated that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</p> </div> </div> </div> </li></ol> </div> <div class="social"> <div class="contact-icons"> <a href="mailto:%64%61%6E%69%65%6C%6D%61%6E%72%69%71%75%65%63%61%73%74%61%6E%6F@%67%61%69%6C.%63%6F%6D" title="email"><i class="fa-solid fa-envelope"></i></a> <a href="https://orcid.org/0000-0002-1912-1764" title="ORCID" rel="external nofollow noopener" target="_blank"><i class="ai ai-orcid"></i></a> <a href="https://scholar.google.com/citations?user=c1kI9gUAAAAJ" title="Google Scholar" rel="external nofollow noopener" target="_blank"><i class="ai ai-google-scholar"></i></a> <a href="https://publons.com/a/5225-2014/" title="Publons" rel="external nofollow noopener" target="_blank"><i class="ai ai-publons"></i></a> <a href="https://www.researchgate.net/profile/Daniel-Manrique-Castano/" title="ResearchGate" rel="external nofollow noopener" target="_blank"><i class="ai ai-researchgate"></i></a> <a href="https://github.com/daniel-manrique" title="GitHub" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-github"></i></a> <a href="https://www.linkedin.com/in/danielmanriquecastano" title="LinkedIn" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-linkedin"></i></a> <a href="https://twitter.com/danielneuroglia" title="X" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-x-twitter"></i></a> <a href="https://medium.com/@damanrique" title="Medium" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-medium"></i></a> <a href="/feed.xml" title="RSS Feed"><i class="fa-solid fa-square-rss"></i></a> </div> <div class="contact-note">Reach me out by e-mail or twitter. I'll be happy to answer. </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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While doing my doctoral studies at the <a href="https://www.ruhr-uni-bochum.de/igsn/" rel="external nofollow noopener" target="_blank">International Graduate School of Neuroscience</a> at the Ruhr-University Bochum, Germany, I realized that traditional analysis methodologies were not suitable to solve my research questions. Thus, I started to educate myself in statistical modeling using probabilistic approaches (Bayesian statistics) and developed a strong data science-based perspective. My current interests lies in unraveling the intricacies of brain scarring and recovery. I leverage a blend of modeling-based data analysis, machine learning, and image processing to dissect these complex processes.</p> <p>In addition, my foray into data analysis has led to the development of unbiased, automated image analysis techniques using Python and machine learning. These <a href="https://medium.com/@damanrique" rel="external nofollow noopener" target="_blank">approaches</a> are particularly beneficial for researchers grappling with traditional, manual cell counting methods.</p> <p>Finally, I am an ardent advocate for open and reproducible science. I firmly believe this approach is essential for maintaining quality control in scientific literature and ensuring effective oversight of scientific outputs. If my expertise aligns with your program’s goals, please feel free to <a href="mailto:danielmanriquecastano@gmail.com">contact me</a>.</p> </div> <h2> <a href="/news/" style="color: inherit">news</a> </h2> <div class="news"> <div class="table-responsive" style="max-height: 60vw"> <table class="table table-sm table-borderless"> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> This website is still <strong>under construction</strong>. Please forgive the broken/misguided links. </td> </tr> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> I’ll start lecturing on research design and data management for the doctoral program in <strong>Applied and Behavioral Neuroscience</strong> at Universidad San Buenaventura, Bogotá (Colombia). </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> I wrote about the Dana Farber <a href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc" rel="external nofollow noopener" target="_blank">scientific missconduct scandal</a>. </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> I open my account on Medium and published my first <a href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736" rel="external nofollow noopener" target="_blank">blog post</a>. </td> </tr> </table> </div> </div> <h2> <a href="/blog/" style="color: inherit">latest posts</a> </h2> <div class="news"> <div class="table-responsive" style="max-height: 60vw"> <table class="table table-sm table-borderless"> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> <a class="news-title" href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">What does the Dana-Farber misconduct scandal reveal about scientific integrity in the XXI century?</a> <svg width="2rem" height="2rem" viewbox="0 0 40 40" xmlns="http://www.w3.org/2000/svg"> <path d="M17 13.5v6H5v-12h6m3-3h6v6m0-6-9 9" class="icon_svg-stroke" stroke="#999" stroke-width="1.5" fill="none" fill-rule="evenodd" stroke-linecap="round" stroke-linejoin="round"></path> </svg> </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> <a class="news-title" href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736?source=rss-bf81f8e6664f------2" target="_blank" rel="external nofollow noopener">Beyond the mean: embracing uncertainty in measurements with multilevel modeling</a> <svg width="2rem" height="2rem" viewbox="0 0 40 40" xmlns="http://www.w3.org/2000/svg"> <path d="M17 13.5v6H5v-12h6m3-3h6v6m0-6-9 9" class="icon_svg-stroke" stroke="#999" stroke-width="1.5" fill="none" fill-rule="evenodd" stroke-linecap="round" stroke-linejoin="round"></path> </svg> </td> </tr> <tr> <th scope="row" style="width: 20%">Jan 27, 2024</th> <td> <a class="news-title" href="/blog/2024/code-diff/">a post with code diff</a> </td> </tr> </table> </div> </div> <h2> <a href="/publications/" style="color: inherit">selected publications</a> </h2> <div class="publications"> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_topological_2018" class="col-sm-8"> <div class="title">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Dec 208 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Topological%20remodeling%20of%20cortical%20perineuronal%20ne" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2018.08.001" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Tyk-4Ss8FVUC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-32-4285F4?logo=googlescholar&amp;labelColor=beige" alt="32 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Despite the crucial role of perineuronal nets (PNNs) in neural plasticity and neurological disorders, their ultrastructural organization remains largely unresolved. We have developed a novel approach combining superresolution structured illumination microscopy (SR-SIM) and mathematical reconstruction that allows for quantitative analysis of PNN topology. Since perineuronal matrix is capable to restrict neural plasticity but at the same time is necessary to maintain synapses, we hypothesized that a beneficial post stroke recovery requires a reversible loosening of PNNs. Our results indicated that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</p> </div> </div> </div> </li></ol> </div> <div class="social"> <div class="contact-icons"> <a href="mailto:%64%61%6E%69%65%6C%6D%61%6E%72%69%71%75%65%63%61%73%74%61%6E%6F@%67%61%69%6C.%63%6F%6D" title="email"><i class="fa-solid fa-envelope"></i></a> <a href="https://orcid.org/0000-0002-1912-1764" title="ORCID" rel="external nofollow noopener" target="_blank"><i class="ai ai-orcid"></i></a> <a href="https://scholar.google.com/citations?user=c1kI9gUAAAAJ" title="Google Scholar" rel="external nofollow noopener" target="_blank"><i class="ai ai-google-scholar"></i></a> <a href="https://publons.com/a/5225-2014/" title="Publons" rel="external nofollow noopener" target="_blank"><i class="ai ai-publons"></i></a> <a href="https://www.researchgate.net/profile/Daniel-Manrique-Castano/" title="ResearchGate" rel="external nofollow noopener" target="_blank"><i class="ai ai-researchgate"></i></a> <a href="https://github.com/daniel-manrique" title="GitHub" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-github"></i></a> <a href="https://www.linkedin.com/in/danielmanriquecastano" title="LinkedIn" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-linkedin"></i></a> <a href="https://twitter.com/danielneuroglia" title="X" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-x-twitter"></i></a> <a href="https://medium.com/@damanrique" title="Medium" rel="external nofollow noopener" target="_blank"><i class="fa-brands fa-medium"></i></a> <a href="/feed.xml" title="RSS Feed"><i class="fa-solid fa-square-rss"></i></a> </div> <div class="contact-note">Reach me out by e-mail or twitter. I'll be happy to answer. </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/news/announcement_3/index.html b/news/announcement_3/index.html
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diff --git a/news/announcement_4/index.html b/news/announcement_4/index.html
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+++ b/news/announcement_4/index.html
@@ -1 +1 @@
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diff --git a/news/index.html b/news/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> news | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. 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Please forgive the broken/misguided links. </td> </tr> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> I’ll start lecturing on research design and data management for the doctoral program in <strong>Applied and Behavioral Neuroscience</strong> at Universidad San Buenaventura, Bogotá (Colombia). </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> I wrote about the Dana Farber <a href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc" rel="external nofollow noopener" target="_blank">scientific missconduct scandal</a>. </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> I open my account on Medium and published my first <a href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736" rel="external nofollow noopener" target="_blank">blog post</a>. </td> </tr> </table> </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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Please forgive the broken/misguided links. </td> </tr> <tr> <th scope="row" style="width: 20%">Mar 07, 2024</th> <td> I’ll start lecturing on research design and data management for the doctoral program in <strong>Applied and Behavioral Neuroscience</strong> at Universidad San Buenaventura, Bogotá (Colombia). </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 20, 2024</th> <td> I wrote about the Dana Farber <a href="https://medium.com/@damanrique/what-does-the-dana-farber-misconduct-scandal-reveal-about-scientific-integrity-in-the-xxi-century-326266e42cdc" rel="external nofollow noopener" target="_blank">scientific missconduct scandal</a>. </td> </tr> <tr> <th scope="row" style="width: 20%">Feb 06, 2024</th> <td> I open my account on Medium and published my first <a href="https://medium.com/@damanrique/beyond-the-mean-embracing-uncertainty-in-measurements-with-multilevel-modeling-2bde9d521736" rel="external nofollow noopener" target="_blank">blog post</a>. </td> </tr> </table> </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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diff --git a/people/index.html b/people/index.html
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@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> People | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Scientists and academics I collaborate with"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/people/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item active"> <a class="nav-link" href="/people/">People <span class="sr-only">(current)</span> </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">People</h1> <p class="post-description">Scientists and academics I collaborate with</p> </header> <article> <div class="post"> <article> <hr> <div class="profile float-right"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Jay-480.webp 480w,/assets/img/Jay-800.webp 800w,/assets/img/Jay-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Jay.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Jay.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Postdoctoral associate</p> <p>Yale School of Medicine</p> <p>dhananjay.bhaskar@yale.edu</p> </div> </div> <div class="clearfix"> <p>Dhananjay Bhaskar is a postdoctoral research associate at Yale University and a Yale – Boehringer Ingelheim Biomedical Data Science Fellow. He earned his Ph.D. in Biomedical Engineering and Sc.M. in Data Science from Brown University in 2021 with a dissertation on topological data analysis of collective motion.</p> <p>Dhananjay’s interests reside at the intersection of mathematical modeling, computational biology, and machine learning. Specifically, my recent work includes: (1) Developing generative models for small molecule and antibody therapeutics, (2) Quantitative analysis of spatiotemporal signaling through the lens of geometric deep learning and topological data analysis, (3) Learning dynamics and inferring regulatory networks (genes and neurons) using graph attention and neural ODE models. For more information visit his personal <a href="https://dbhaskar92.github.io/" rel="external nofollow noopener" target="_blank">site</a>.</p> </div> <hr> <div class="profile float-left"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Egor-480.webp 480w,/assets/img/Egor-800.webp 800w,/assets/img/Egor-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Egor.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Egor.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Postdoctoral associate</p> <p>Essen Unversity Hosptal</p> <p>egor.dzyubenko@uk-essen.de</p> </div> </div> <div class="clearfix"> <p>Egor Dzyubenko studied biology, biophysics and bionanotechnology at Lomonosov’s Moscow State University and received his diploma in 2011. His diploma thesis focussed on the dynamics of mitochondrial membrane potential during hyperglycaemic stress in cultivated neurons. He performed his PhD thesis at the Department of Cell Morphology and Molecular Neurobiology of the Ruhr University Bochum under the supervision of Prof. Dr. Andreas Faissner from 2012 until 2016. His thesis entitled ‘Modifying synaptogenesis and functional state of neural networks in vitro: insights from antipsychotic treatments and extracellular matrix depletion’ was awarded with the grade “with distinction”. Subsequently, he moved to the University Hospital Essen and joined the NeuroScienceLab within the Chair of Vascular Neurology, Dementia and Ageing Research in 2017. <a href="https://www.researchgate.net/profile/Egor-Dzyubenko/research" rel="external nofollow noopener" target="_blank">Here</a> his ResearchGate profile.</p> </div> </article> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> People | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Scientists and academics I collaborate with"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/people/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item "> <a class="nav-link" href="/projects/">Projects </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item active"> <a class="nav-link" href="/people/">People <span class="sr-only">(current)</span> </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">People</h1> <p class="post-description">Scientists and academics I collaborate with</p> </header> <article> <div class="post"> <article> <hr> <div class="profile float-right"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Jay-480.webp 480w,/assets/img/Jay-800.webp 800w,/assets/img/Jay-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Jay.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Jay.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Postdoctoral associate</p> <p>Yale School of Medicine</p> <p>dhananjay.bhaskar@yale.edu</p> </div> </div> <div class="clearfix"> <p>Dhananjay Bhaskar is a postdoctoral research associate at Yale University and a Yale – Boehringer Ingelheim Biomedical Data Science Fellow. He earned his Ph.D. in Biomedical Engineering and Sc.M. in Data Science from Brown University in 2021 with a dissertation on topological data analysis of collective motion.</p> <p>Dhananjay’s interests reside at the intersection of mathematical modeling, computational biology, and machine learning. Specifically, my recent work includes: (1) Developing generative models for small molecule and antibody therapeutics, (2) Quantitative analysis of spatiotemporal signaling through the lens of geometric deep learning and topological data analysis, (3) Learning dynamics and inferring regulatory networks (genes and neurons) using graph attention and neural ODE models. For more information visit his personal <a href="https://dbhaskar92.github.io/" rel="external nofollow noopener" target="_blank">site</a>.</p> </div> <hr> <div class="profile float-left"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Egor-480.webp 480w,/assets/img/Egor-800.webp 800w,/assets/img/Egor-1400.webp 1400w," sizes="(min-width: 800px) 231.0px, (min-width: 576px) 30vw, 95vw" type="image/webp"> <img src="/assets/img/Egor.jpg" class="img-fluid z-depth-1 rounded" width="100%" height="auto" alt="Egor.jpg" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </source></picture> </figure> <div class="more-info"> <p>Postdoctoral associate</p> <p>Essen Unversity Hosptal</p> <p>egor.dzyubenko@uk-essen.de</p> </div> </div> <div class="clearfix"> <p>Egor Dzyubenko studied biology, biophysics and bionanotechnology at Lomonosov’s Moscow State University and received his diploma in 2011. His diploma thesis focussed on the dynamics of mitochondrial membrane potential during hyperglycaemic stress in cultivated neurons. He performed his PhD thesis at the Department of Cell Morphology and Molecular Neurobiology of the Ruhr University Bochum under the supervision of Prof. Dr. Andreas Faissner from 2012 until 2016. His thesis entitled ‘Modifying synaptogenesis and functional state of neural networks in vitro: insights from antipsychotic treatments and extracellular matrix depletion’ was awarded with the grade “with distinction”. Subsequently, he moved to the University Hospital Essen and joined the NeuroScienceLab within the Chair of Vascular Neurology, Dementia and Ageing Research in 2017. <a href="https://www.researchgate.net/profile/Egor-Dzyubenko/research" rel="external nofollow noopener" target="_blank">Here</a> his ResearchGate profile.</p> </div> </article> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Point pattern analysis (PPA) for neuroscience | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/1_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Point pattern analysis (PPA) for neuroscience</h1> <p class="post-description">Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells.</p> </header> <article> <p>I am exploring ways to incorporate Point patterns analysis (PPA) for the analysis of microscopy images in neuroscience. PPA allows the investigation of the spatial arrangement/distribution of cells, like neurons and neuroglia, in the healthy and disease central nervous system. Indeed, it has application in multiple biomedical fields. I perform point pattern analysis using the <a href="https://spatstat.org/download.html" rel="external nofollow noopener" target="_blank">spatstat</a> package in R-programming language.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Pointanalysis-480.webp 480w,/assets/img/Pointanalysis-800.webp 800w,/assets/img/Pointanalysis-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/Pointanalysis.png" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="PPA" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Density kernel generated from point patterns. </div> <p>A first approach is available in this <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">prepint</a> and its corresponding <a href="https://github.com/daniel-manrique/Stroke_GlialScar_PPA-TDA" rel="external nofollow noopener" target="_blank">repository</a>. I also developed a protocol for Star Protocols (Cell Press) and its corresponding <a href="https://github.com/daniel-manrique/StarProtocol_PPA" rel="external nofollow noopener" target="_blank">repository</a>. If you have any ideas or want to implement this approach to your research, please feel free to contact me.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Point pattern analysis (PPA) for neuroscience | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/1_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Point pattern analysis (PPA) for neuroscience</h1> <p class="post-description">Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells.</p> </header> <article> <p>I am exploring ways to incorporate Point patterns analysis (PPA) for the analysis of microscopy images in neuroscience. PPA allows the investigation of the spatial arrangement/distribution of cells, like neurons and neuroglia, in the healthy and disease central nervous system. Indeed, it has application in multiple biomedical fields. I perform point pattern analysis using the <a href="https://spatstat.org/download.html" rel="external nofollow noopener" target="_blank">spatstat</a> package in R-programming language.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Pointanalysis-480.webp 480w,/assets/img/Pointanalysis-800.webp 800w,/assets/img/Pointanalysis-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/Pointanalysis.png" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="PPA" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Density kernel generated from point patterns. </div> <p>A first approach is available in this <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">prepint</a> and its corresponding <a href="https://github.com/daniel-manrique/Stroke_GlialScar_PPA-TDA" rel="external nofollow noopener" target="_blank">repository</a>. I also developed a protocol for Star Protocols (Cell Press) and its corresponding <a href="https://github.com/daniel-manrique/StarProtocol_PPA" rel="external nofollow noopener" target="_blank">repository</a>. If you have any ideas or want to implement this approach to your research, please feel free to contact me.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Topological data analysis for neuroscience | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Topological Data Analysis (TDA) to examine topological features of point clouds."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/2_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Topological data analysis for neuroscience</h1> <p class="post-description">Topological Data Analysis (TDA) to examine topological features of point clouds.</p> </header> <article> <p>Topological data analysis (TDA) is an approach that uses algebraic topology to analyze complex data sets, including point clouds. With TDA, the user can evaluate the degree of noise, variability, and complexity, as well as identifying topological features such as holes, loops, and voids in the point clouds at different scales. This approach is based on tools like vietoris-rips complexes and persistent homology that allow to visualize complex topological structures.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/TDAimg-480.webp 480w,/assets/img/TDAimg-800.webp 800w,/assets/img/TDAimg-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/TDAimg.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="example image" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Example of Vietoris-Rips complexes. </div> <p>A first approach is available in this <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">prepint</a> and its corresponding <a href="https://github.com/daniel-manrique/Stroke_GlialScar_PPA-TDA" rel="external nofollow noopener" target="_blank">repository</a>. If you have any ideas or want to implement this approach to your research, please feel free to contact me. I also recommend to get in touch with my colleague <a href="http://www.dhananjaybhaskar.com/" rel="external nofollow noopener" target="_blank">Dhananjay Bhaskar</a> for this matter.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Topological data analysis for neuroscience | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Topological Data Analysis (TDA) to examine topological features of point clouds."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/2_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Topological data analysis for neuroscience</h1> <p class="post-description">Topological Data Analysis (TDA) to examine topological features of point clouds.</p> </header> <article> <p>Topological data analysis (TDA) is an approach that uses algebraic topology to analyze complex data sets, including point clouds. With TDA, the user can evaluate the degree of noise, variability, and complexity, as well as identifying topological features such as holes, loops, and voids in the point clouds at different scales. This approach is based on tools like vietoris-rips complexes and persistent homology that allow to visualize complex topological structures.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/TDAimg-480.webp 480w,/assets/img/TDAimg-800.webp 800w,/assets/img/TDAimg-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/TDAimg.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="example image" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Example of Vietoris-Rips complexes. </div> <p>A first approach is available in this <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">prepint</a> and its corresponding <a href="https://github.com/daniel-manrique/Stroke_GlialScar_PPA-TDA" rel="external nofollow noopener" target="_blank">repository</a>. If you have any ideas or want to implement this approach to your research, please feel free to contact me. I also recommend to get in touch with my colleague <a href="http://www.dhananjaybhaskar.com/" rel="external nofollow noopener" target="_blank">Dhananjay Bhaskar</a> for this matter.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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diff --git a/projects/4_project/index.html b/projects/4_project/index.html
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Glial reactivity | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Research on glial reactivity following brain injury"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/4_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Glial reactivity</h1> <p class="post-description">Research on glial reactivity following brain injury</p> </header> <article> <p>As a neuroscientist, I am focused on understanding glial reactivity after brain injury. I am particularly interested in astrocytes and their derived extracellular matrix molecules. Recently, I have ventured into the study of PDGFR-B cells and their contribution to fibrotic scar.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Glial%20scarring-480.webp 480w,/assets/img/Glial%20scarring-800.webp 800w,/assets/img/Glial%20scarring-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/Glial%20scarring.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="example image" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Multicellular reactivity and glial scar formation (Manrique-Castano and Elali (2021). </div> <h2 id="resources">Resources</h2> <p>The following are research/resources I have been involved:</p> <h3 id="research-articles-and-book-chapters">Research articles and book chapters</h3> <ul> <li> <p><strong>In progress</strong>: I am writing popular science book on astrocytes. I hope to finish it soon.</p> </li> <li> <p>My <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">research article</a> applying Point pattern analysis (PPA) and Topological data analysis (TDA) for the examination of glial scar formation.</p> </li> <li> <p>My <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">research article</a> showing that tenascinc-C (TnC) restrict astrologists following brain injury.</p> </li> <li> <p>In this <a href="https://exonpublications.com/index.php/exon/article/view/cerebral-ischemia-neurovascular-reactivity" rel="external nofollow noopener" target="_blank">book chapter</a> I summarize the different phases of glial reactivity and how it contributies to glial/fibrotic scar formation.</p> </li> <li> <p>My <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">research article</a> showing that tenascinc-C (TnC) modulates the infiltration of immune T-cells.</p> </li> <li> <p>My <a href="https://journals.sagepub.com/doi/10.1177/1756286418818092" rel="external nofollow noopener" target="_blank">review</a> showing how the extracelular matrix contributes to brain remodeling following injury.</p> </li> </ul> <h3 id="datasets">Datasets</h3> <ul> <li>This <a href="https://zenodo.org/records/8399976" rel="external nofollow noopener" target="_blank">Zenodo repository</a> contains microscopy images of Gfap (astrocytes) Iba1 (microglia) and NeuN (Neurons) following cerebral ischemia.The repository also contains the point patterns analyzed in <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">this</a> research artcle.</li> </ul> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Glial reactivity | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Research on glial reactivity following brain injury"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/4_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Glial reactivity</h1> <p class="post-description">Research on glial reactivity following brain injury</p> </header> <article> <p>As a neuroscientist, I am focused on understanding glial reactivity after brain injury. I am particularly interested in astrocytes and their derived extracellular matrix molecules. Recently, I have ventured into the study of PDGFR-B cells and their contribution to fibrotic scar.</p> <div class="row"> <div class="col-sm mt-3 mt-md-0"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/Glial%20scarring-480.webp 480w,/assets/img/Glial%20scarring-800.webp 800w,/assets/img/Glial%20scarring-1400.webp 1400w," sizes="95vw" type="image/webp"></source> <img src="/assets/img/Glial%20scarring.jpg" class="img-fluid rounded z-depth-1" width="100%" height="auto" title="example image" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> </div> </div> <div class="caption"> Multicellular reactivity and glial scar formation (Manrique-Castano and Elali (2021). </div> <h2 id="resources">Resources</h2> <p>The following are research/resources I have been involved:</p> <h3 id="research-articles-and-book-chapters">Research articles and book chapters</h3> <ul> <li> <p><strong>In progress</strong>: I am writing popular science book on astrocytes. I hope to finish it soon.</p> </li> <li> <p>My <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">research article</a> applying Point pattern analysis (PPA) and Topological data analysis (TDA) for the examination of glial scar formation.</p> </li> <li> <p>My <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">research article</a> showing that tenascinc-C (TnC) restrict astrologists following brain injury.</p> </li> <li> <p>In this <a href="https://exonpublications.com/index.php/exon/article/view/cerebral-ischemia-neurovascular-reactivity" rel="external nofollow noopener" target="_blank">book chapter</a> I summarize the different phases of glial reactivity and how it contributies to glial/fibrotic scar formation.</p> </li> <li> <p>My <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" rel="external nofollow noopener" target="_blank">research article</a> showing that tenascinc-C (TnC) modulates the infiltration of immune T-cells.</p> </li> <li> <p>My <a href="https://journals.sagepub.com/doi/10.1177/1756286418818092" rel="external nofollow noopener" target="_blank">review</a> showing how the extracelular matrix contributes to brain remodeling following injury.</p> </li> </ul> <h3 id="datasets">Datasets</h3> <ul> <li>This <a href="https://zenodo.org/records/8399976" rel="external nofollow noopener" target="_blank">Zenodo repository</a> contains microscopy images of Gfap (astrocytes) Iba1 (microglia) and NeuN (Neurons) following cerebral ischemia.The repository also contains the point patterns analyzed in <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" rel="external nofollow noopener" target="_blank">this</a> research artcle.</li> </ul> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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diff --git a/projects/5_project/index.html b/projects/5_project/index.html
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@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> project 5 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a project with a background image"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/5_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">project 5</h1> <p class="post-description">a project with a background image</p> </header> <article> <p>Every project has a beautiful feature showcase page. It’s easy to include images in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.</p> <p>To give your project a background in the portfolio page, just add the img tag to the front matter like so:</p> <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>---
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> project 5 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a project with a background image"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/5_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">project 5</h1> <p class="post-description">a project with a background image</p> </header> <article> <p>Every project has a beautiful feature showcase page. It’s easy to include images in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.</p> <p>To give your project a background in the portfolio page, just add the img tag to the front matter like so:</p> <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>---
 layout: page
 title: project
 description: a project with a background image
diff --git a/projects/6_project/index.html b/projects/6_project/index.html
index cf93c7e..4826d17 100644
--- a/projects/6_project/index.html
+++ b/projects/6_project/index.html
@@ -1,4 +1,4 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> project 6 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a project with no image"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/6_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">project 6</h1> <p class="post-description">a project with no image</p> </header> <article> <p>Every project has a beautiful feature showcase page. It’s easy to include images in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.</p> <p>To give your project a background in the portfolio page, just add the img tag to the front matter like so:</p> <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>---
+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> project 6 | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="a project with no image"> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/6_project/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/teaching/">Talks</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> <li class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">project 6</h1> <p class="post-description">a project with no image</p> </header> <article> <p>Every project has a beautiful feature showcase page. It’s easy to include images in a flexible 3-column grid format. Make your photos 1/3, 2/3, or full width.</p> <p>To give your project a background in the portfolio page, just add the img tag to the front matter like so:</p> <div class="language-plaintext highlighter-rouge"><div class="highlight"><pre class="highlight"><code>---
 layout: page
 title: project
 description: a project with a background image
diff --git a/projects/index.html b/projects/index.html
index 6aa33d0..ee47f64 100644
--- a/projects/index.html
+++ b/projects/index.html
@@ -1 +1 @@
-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Projects | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="My collection of professional projects including original research, writing and collaborative work."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&amp;display=swap"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-github.css?591dab5a4e56573bf4ef7fd332894c99" media="" id="highlight_theme_light"> <link rel="shortcut icon" href="data:image/svg+xml,&lt;svg%20xmlns=%22http://www.w3.org/2000/svg%22%20viewBox=%220%200%20100%20100%22&gt;&lt;text%20y=%22.9em%22%20font-size=%2290%22&gt;%E2%9A%9B%EF%B8%8F&lt;/text&gt;&lt;/svg&gt;"> <link rel="stylesheet" href="/assets/css/main.css?d41d8cd98f00b204e9800998ecf8427e"> <link rel="canonical" href="https://daniel-manrique.github.io/projects/"> <link defer rel="stylesheet" href="/assets/css/jekyll-pygments-themes-native.css?5847e5ed4a4568527aa6cfab446049ca" media="none" id="highlight_theme_dark"> <script src="/assets/js/theme.js?0afe9f0ae161375728f7bcc5eb5b4ab4"></script> </head> <body class="fixed-top-nav "> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item "> <a class="nav-link" href="/publications/">Publications </a> </li> <li class="nav-item active"> <a class="nav-link" href="/projects/">Projects <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a class="nav-link" href="/repositories/">Repositories </a> </li> <li class="nav-item "> <a class="nav-link" href="/cv/">CV </a> </li> <li class="nav-item "> <a class="nav-link" href="/teaching/">Teaching </a> </li> <li class="nav-item "> <a class="nav-link" href="/about_books/">Books </a> </li> <li class="nav-item "> <a class="nav-link" href="/people/">People </a> </li> <li class="nav-item dropdown "> <a class="nav-link dropdown-toggle" href="#" id="navbarDropdown" role="button" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Others </a> <div class="dropdown-menu dropdown-menu-right" aria-labelledby="navbarDropdown"> <a class="dropdown-item " href="/about_books/">Books</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/projects/">Journalism</a> <div class="dropdown-divider"></div> <a class="dropdown-item " href="/blog/">YouTube</a> </div> </li> 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sizes="250px" type="image/webp"></source> <img src="/assets/img/Pointanalysis.png" width="100%" height="auto" alt="project thumbnail" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <div class="card-body"> <h2 class="card-title text-lowercase">Point pattern analysis (PPA) for neuroscience</h2> <p class="card-text">Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells.</p> <div class="row ml-1 mr-1 p-0"> </div> </div> </div> </a> </div> <div class="grid-sizer"></div> <div class="grid-item"> <a href="/projects/2_project/"> <div class="card hoverable"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/TDAimg-480.webp 480w,/assets/img/TDAimg-800.webp 800w,/assets/img/TDAimg-1400.webp 1400w," sizes="250px" type="image/webp"></source> <img src="/assets/img/TDAimg.jpg" width="100%" height="auto" alt="project thumbnail" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <div class="card-body"> <h2 class="card-title text-lowercase">Topological data analysis for neuroscience</h2> <p class="card-text">Topological Data Analysis (TDA) to examine topological features of point clouds.</p> <div class="row ml-1 mr-1 p-0"> </div> </div> </div> </a> </div> </div> <a id="Data visualization" href=".#Data%20visualization"> <h2 class="category">Data visualization</h2> </a> <div class="grid"> </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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sizes="250px" type="image/webp"></source> <img src="/assets/img/Pointanalysis.png" width="100%" height="auto" alt="project thumbnail" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <div class="card-body"> <h2 class="card-title text-lowercase">Point pattern analysis (PPA) for neuroscience</h2> <p class="card-text">Point pattern analysis (PPA) to examine the spatial arrangement/distribution of cells.</p> <div class="row ml-1 mr-1 p-0"> </div> </div> </div> </a> </div> <div class="grid-sizer"></div> <div class="grid-item"> <a href="/projects/2_project/"> <div class="card hoverable"> <figure> <picture> <source class="responsive-img-srcset" srcset="/assets/img/TDAimg-480.webp 480w,/assets/img/TDAimg-800.webp 800w,/assets/img/TDAimg-1400.webp 1400w," sizes="250px" type="image/webp"></source> <img src="/assets/img/TDAimg.jpg" width="100%" height="auto" alt="project thumbnail" loading="eager" onerror="this.onerror=null; $('.responsive-img-srcset').remove();"> </picture> </figure> <div class="card-body"> <h2 class="card-title text-lowercase">Topological data analysis for neuroscience</h2> <p class="card-text">Topological Data Analysis (TDA) to examine topological features of point clouds.</p> <div class="row ml-1 mr-1 p-0"> </div> </div> </div> </a> </div> </div> <a id="Data visualization" href=".#Data%20visualization"> <h2 class="category">Data visualization</h2> </a> <div class="grid"> </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span class="font-weight-bold">Daniel</span> Manrique-Castano </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">About </a> </li> <li class="nav-item "> <a class="nav-link" href="/blog/">Blog </a> </li> <li class="nav-item active"> <a class="nav-link" href="/publications/">Publications <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a 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class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Publications</h1> <p class="post-description">Research articles authored by Daniel Manrique-Castano.</p> </header> <article> <div class="publications"> <h2 class="bibliography">2023</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">BioArx</abbr> </div> <div id="manrique-castano_dissecting_2023" class="col-sm-8"> <div class="title">Dissecting glial scar formation by spatial point pattern and topological data analysis</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Dhananjay Bhaskar , and Ayman ElAli </div> <div class="periodical"> Oct 2023 </div> <div class="periodical"> Pages: 2023.10.04.560910 Section: New Results </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202023%20-%20Dissecting%20glial%20scar%20formation%20by%20spatial%20point.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1101/2023.10.04.560910" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-N/A-4285F4?logo=googlescholar&amp;labelColor=beige" alt="N/A Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Glial scar formation represents a fundamental response to central nervous system (CNS) injury. It is mainly characterized by a well-defined spatial rearrangement of reactive astrocytes and microglia. The mechanisms underlying glial scar formation have been extensively studied, yet quantitative descriptors of the spatial arrangement of reactive glial cells remain limited. Here, we present a novel approach using point pattern analysis (PPA) and topological data analysis (TDA) to quantify spatial patterns of reactive glial cells after experimental ischemic stroke in mice. We provide open and reproducible tools using R and Julia to quantify spatial intensity, cell covariance and conditional distribution, cell-to-cell interactions, and short/long-scale arrangement, which collectively disentangle the arrangement patterns of the glial scar. This approach unravels a substantial divergence in the distribution of reactive astrocytes and microglia after injury that conventional analysis methods cannot fully characterize. PPA and TDA are valuable tools for studying the complex spatial arrangement of reactive glia and other nervous cells following CNS injuries and have potential applications for evaluating glial-targeted restorative therapies.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2022</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_tenascin-c_2022" class="col-sm-8"> <div class="title">Tenascin-C restricts reactive astrogliosis in the ischemic brain</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Matthias Pillath-Eilers , and <span class="more-authors" title="click to view 4 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '4 more authors' ? 'Paraskevi Vasileiadou, Jacqueline Reinhard, Andreas Faissner, Dirk M Hermann' : '4 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">4 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Jun 2022 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Tenascin-C%20restricts%20reactive%20astrogliosis%20in%20the%20ischemic%20brain.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2022.04.003" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:3fE2CSJIrl8C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-7-4285F4?logo=googlescholar&amp;labelColor=beige" alt="7 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Cellular responses in glia play a key role in regulating brain remodeling post-stroke. However, excessive glial reactivity impedes post-ischemic neuroplasticity and hampers neurological recovery. While damage-associated molecular patterns and activated microglia were shown to induce astrogliosis, the molecules that restrain astrogliosis are largely unknown. We explored the role of tenascin-C (TnC), an extracellular matrix component involved in wound healing and remodeling of injured tissues, in mice exposed to ischemic stroke induced by transient intraluminal middle cerebral artery occlusion. In the healthy adult brain, TnC expression is restricted to neurogenic stem cell niches. We previously reported that TnC is upregulated in ischemic brain lesions. We herein show that the de novo expression of TnC post-stroke is closely associated with reactive astrocytes, and that astrocyte reactivity at 14 days post-ischemia is increased in TnC-deficient mice (TnC−/−). By analyzing the three-dimensional morphology of astrocytes in previously ischemic brain tissue, we revealed that TnC−/− reduces astrocytic territorial volume, branching point number, and branch length, which are presumably hallmarks of the homeostatic regulatory astrocyte state, in the post-acute stroke phase after 42 days. Interestingly, TnC−/− moderately increased aggrecan, a neuroplasticity-inhibiting proteoglycan, in the ischemic brain tissue at 42 days post-ischemia. In vitro in astrocyte-microglia cocultures, we showed that TnC−/− reduces the microglial migration speed on astrocytes and elevates intercellular adhesion molecule 1 (ICAM1) expression. Post-stroke, TnC−/− did not alter the ischemic lesion size or neurological recovery, however microglia-associated ICAM1 was upregulated in TnC−/− mice during the first week post stroke. Our data suggest that TnC plays a central role in restraining post-ischemic astrogliosis and regulating astrocyte-microglial interactions.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2021</h2> <ol class="bibliography"> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Exxon</abbr> </div> <div id="daniel_manrique-castano_neurovascular_2021" class="col-sm-8"> <div class="title">Neurovascular Reactivity in Tissue Scarring Following Cerebral Ischemia</div> <div class="author"> <em>Daniel Manrique-Castano</em>, and Ayman ElAli </div> <div class="periodical"> <em>Exon Publications</em>, Nov 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://exonpublications.com/index.php/exon/article/view/cerebral-ischemia-neurovascular-reactivity" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Daniel%20Manrique-Castano%20and%20Ayman%20ElAli%20-%202021%20-%20Neurovascular%20Reactivity%20in%20Tissue%20Scarring%20Follow.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.36255/exonpublications.cerebralischemia.2021.neurovascularreactivity" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:8k81kl-MbHgC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-3-4285F4?logo=googlescholar&amp;labelColor=beige" alt="3 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>ABSTRACT Tissue scarring upon cerebral ischemia entails a cascade of multifaceted cellular and molecular mechanisms that govern the remodeling of the neurovascular unit, which integrates neuronal, glial, and vascular functions.  The process encompasses inflammation, glial reactivity, vascular reactivity, and neuronal remodeling. In this chapter we cover three major aspects involved in tissue scarring after cerebral ischemia. First, we outline the primary cellular mechanisms underlying glial scar formation, emphasizing on the interactions between astrocytes, microglia, and mural cells, including pericytes and fibroblasts at the injury core and perilesional areas. Next, we address the key routes of extracellular matrix deposition by reactive and fibrogenic cells, including proteoglycans, tenascins, fibronectin, and collagen. Finally, we discuss the promises and challenges of manipulating tissue scarring as a strategy to promote brain structural remodeling and neurological recovery.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Front. cell. neurosci</abbr> </div> <div id="lecordier_neurovascular_2021" class="col-sm-8"> <div class="title">Neurovascular Alterations in Vascular Dementia: Emphasis on Risk Factors</div> <div class="author"> Sarah Lecordier , <em>Daniel Manrique-Castano</em>, Yara El Moghrabi , and <span class="more-authors" title="click to view 1 more author" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '1 more author' ? 'Ayman ElAli' : '1 more author'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">1 more author</span> </div> <div class="periodical"> <em>Frontiers in Aging Neuroscience</em>, Nov 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.frontiersin.org/articles/10.3389/fnagi.2021.727590" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Lecordier%20et%20al.%20-%202021%20-%20Neurovascular%20Alterations%20in%20Vascular%20Dementia%20Em.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-pmid="" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:5nxA0vEk-isC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-31-4285F4?logo=googlescholar&amp;labelColor=beige" alt="31 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Vascular dementia (VaD) constitutes the second most prevalent cause of dementia in the world after Alzheimer’s disease (AD). VaD regroups heterogeneous neurological conditions in which the decline of cognitive functions, including executive functions, is associated with structural and functional alterations in the cerebral vasculature. Among these cerebrovascular disorders, major stroke, and cerebral small vessel disease (cSVD) constitute the major risk factors for VaD. These conditions alter neurovascular functions leading to blood-brain barrier (BBB) deregulation, neurovascular coupling dysfunction, and inflammation. Accumulation of neurovascular impairments over time underlies the cognitive function decline associated with VaD. Furthermore, several vascular risk factors, such as hypertension, obesity, and diabetes have been shown to exacerbate neurovascular impairments and thus increase VaD prevalence. Importantly, air pollution constitutes an underestimated risk factor that triggers vascular dysfunction via inflammation and oxidative stress. The review summarizes the current knowledge related to the pathological mechanisms linking neurovascular impairments associated with stroke, cSVD, and vascular risk factors with a particular emphasis on air pollution, to VaD etiology and progression. Furthermore, the review discusses the major challenges to fully elucidate the pathobiology of VaD, as well as research directions to outline new therapeutic interventions.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">CMLS</abbr> </div> <div id="dzyubenko_inhibitory_2021" class="col-sm-8"> <div class="title">Inhibitory control in neuronal networks relies on the extracellular matrix integrity</div> <div class="author"> Egor Dzyubenko , Michael Fleischer , <em>Daniel Manrique-Castano</em>, and <span class="more-authors" title="click to view 4 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '4 more authors' ? 'Mina Borbor, Christoph Kleinschnitz, Andreas Faissner, Dirk M. Hermann' : '4 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">4 more authors</span> </div> <div class="periodical"> <em>Cellular and Molecular Life Sciences</em>, Jul 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://doi.org/10.1007/s00018-021-03861-3" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202021%20-%20Inhibitory%20control%20in%20neuronal%20networks%20relies%20on%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1007/s00018-021-03861-3" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:0EnyYjriUFMC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-19-4285F4?logo=googlescholar&amp;labelColor=beige" alt="19 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Inhibitory control is essential for the regulation of neuronal network activity, where excitatory and inhibitory synapses can act synergistically, reciprocally, and antagonistically. Sustained excitation-inhibition (E-I) balance, therefore, relies on the orchestrated adjustment of excitatory and inhibitory synaptic strength. While growing evidence indicates that the brain’s extracellular matrix (ECM) is a crucial regulator of excitatory synapse plasticity, it remains unclear whether and how the ECM contributes to inhibitory control in neuronal networks. Here we studied the simultaneous changes in excitatory and inhibitory connectivity after ECM depletion. We demonstrate that the ECM supports the maintenance of E-I balance by retaining inhibitory connectivity. Quantification of synapses and super-resolution microscopy showed that depletion of the ECM in mature neuronal networks preferentially decreases the density of inhibitory synapses and the size of individual inhibitory postsynaptic scaffolds. The reduction of inhibitory synapse density is partially compensated by the homeostatically increasing synaptic strength via the reduction of presynaptic GABAB receptors, as indicated by patch-clamp measurements and GABAB receptor expression quantifications. However, both spiking and bursting activity in neuronal networks is increased after ECM depletion, as indicated by multi-electrode recordings. With computational modelling, we determined that ECM depletion reduces the inhibitory connectivity to an extent that the inhibitory synapse scaling does not fully compensate for the reduced inhibitory synapse density. Our results indicate that the brain’s ECM preserves the balanced state of neuronal networks by supporting inhibitory control via inhibitory synapse stabilization, which expands the current understanding of brain activity regulation.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">BBI</abbr> </div> <div id="manrique-castano_tenascin-c_2021" class="col-sm-8"> <div class="title">Tenascin-C preserves microglia surveillance and restricts leukocyte and, more specifically, T cell infiltration of the ischemic brain</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Egor Dzyubenko , Mina Borbor , and <span class="more-authors" title="click to view 5 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '5 more authors' ? 'Paraskevi Vasileiadou, Christoph Kleinschnitz, Lars Roll, Andreas Faissner, Dirk M. Hermann' : '5 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">5 more authors</span> </div> <div class="periodical"> <em>Brain, Behavior, and Immunity</em>, Jan 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.sciencedirect.com/science/article/pii/S0889159120323667" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Tenascin-C%20preserves%20microglia%20surveillance%20and%20restricts%20leukocyte.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.bbi.2020.10.016" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:UebtZRa9Y70C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-24-4285F4?logo=googlescholar&amp;labelColor=beige" alt="24 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>As an endogenous activator of toll-like receptor-4 (Tlr4), the extracellular matrix glycoprotein tenascin-C (TnC) regulates chemotaxis, phagocytosis and proinflammatory cytokine production in microglia. The role of TnC for ischemic brain injury, post-ischemic immune responses and stroke recovery has still not been evaluated. By comparing wild type and TnC−/− mice exposed to transient intraluminal middle cerebral artery occlusion (MCAO), we examined the effects of TnC deficiency for ischemic injury, neurological deficits, microglia/macrophage activation and brain leukocyte infiltration using behavioural tests, histochemical studies, Western blot, polymerase chain reaction and flow cytometry. Histochemical studies revealed that TnC was de novo expressed in the ischemic striatum, which contained the infarct core, and overlapped with the area of strongest accumulation of Iba1 + microglia/macrophages. TnC deficiency increased overall Iba1 immunoreactivity in the perilesional cortex, suggesting that TnC might restrict the distribution of microglial cells to the infarct core. By analysing microglial morphology in 3D we found that the post-ischemic loss of microglial cell territory, branching and volume at 3 and 7 days post-ischemia was amplified in the brains of TnC deficient compared with wild type mice. Microglial cell number was not different between genotypes. Hence, TnC deficiency reduced tissue surveillance by microglial cells. Concomitantly, the number of infiltrating leukocytes and, more specifically, T cells was increased in the ischemic brain parenchyma of TnC deficient compared with wild type mice. Ischemic injury and neurological deficits were not affected by TnC deficiency. We propose that the reduced microglia surveillance in TnC deficient mice might favour leukocyte accumulation in the ischemic brain.</p> </div> </div> </div> </li> </ol> <h2 class="bibliography">2019</h2> <ol class="bibliography"> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Front. cell. neurosci</abbr> </div> <div id="manrique-castano_deactivation_2019" class="col-sm-8"> <div class="title">Deactivation of ATP-Binding Cassette Transporters ABCB1 and ABCC1 Does Not Influence Post-ischemic Neurological Deficits, Secondary Neurodegeneration and Neurogenesis, but Induces Subtle Microglial Morphological Changes</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Maryam Sardari , Tayana Carvalho , and <span class="more-authors" title="click to view 5 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '5 more authors' ? 'Thorsten R. Doeppner, Aurel Popa-Wagner, Christoph Kleinschnitz, Andrew Chan, Dirk M. Hermann' : '5 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">5 more authors</span> </div> <div class="periodical"> <em>Frontiers in Cellular Neuroscience</em>, Jan 2019 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.frontiersin.org/articles/10.3389/fncel.2019.00412" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202019%20-%20Deactivation%20of%20ATP-Binding%20Cassette%20Transporters%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-pmid="" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:YsMSGLbcyi4C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-6-4285F4?logo=googlescholar&amp;labelColor=beige" alt="6 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>ATP-binding cassette (ABC) transporters prevent the access of pharmacological compounds to the ischemic brain, thereby impeding the efficacy of stroke therapies. ABC transporters can be deactivated by selective inhibitors, which potently increase the brain accumulation of drugs. Concerns have been raised that long-term ABC transporter deactivation may promote neuronal degeneration and, under conditions of ischemic stroke, compromise neurological recovery. To elucidate this issue, we exposed male C57BL/6 mice to transient intraluminal middle cerebral artery occlusion (MCAO) and examined the effects of the selective ABCB1 inhibitor tariquidar (8 mg/kg/day) or ABCC1 inhibitor MK-571 (10 mg/kg/day), which were administered alone or in combination with each other over up to 28 days, on neurological recovery and brain injury. Mice were sacrificed after 14, 28, or 56 days. The Clark score, RotaRod, tight rope, and open field tests revealed reproducible motor-coordination deficits in mice exposed to intraluminal MCAO, which were not influenced by ABCB1, ABCC1, or combined ABCB1 and ABCC1 deactivation. Brain volume, striatum volume, and corpus callosum thickness were not altered by ABCB1, ABCC1 or ABCB1, and ABCC1 inhibitors. Similarly, neuronal survival and reactive astrogliosis, evaluated by NeuN and GFAP immunohistochemistry in the ischemic striatum, were unchanged. Iba1 immunohistochemistry revealed no changes of the overall density of activated microglia in the ischemic striatum of ABC transporter inhibitor treated mice, but subtle changes of microglial morphology, that is, reduced microglial cell volume by ABCB1 deactivation after 14 and 28 days and reduced microglial ramification by ABCB1, ABCC1 and combined ABCB1 and ABCC1 deactivation after 56 days. Endogenous neurogenesis, assessed by BrdU incorporation analysis, was not influenced by ABCB1, ABCC1 or combined ABCB1 and ABCC1 deactivation. Taken together, this study could not detect any exacerbation of neurological deficits or brain injury after long-term ABC transporter deactivation in this preclinical stroke model.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">EJN</abbr> </div> <div id="manrique-castano_encods_2019" class="col-sm-8"> <div class="title">ENCODS: A novel initiative to inspire young neuroscientists</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Adriana Casteren , Boris Bouazza-Arostegui , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Donald Iain MacDonald, Paul Pfeiffer' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>European Journal of Neuroscience</em>, Jan 2019 </div> <div class="periodical"> _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ejn.14428 </div> <div class="links"> <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/ejn.14428" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202019%20-%20ENCODS%20A%20novel%20initiative%20to%20inspire%20young%20neuros.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1111/ejn.14428" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:W7OEmFMy1HYC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-0-4285F4?logo=googlescholar&amp;labelColor=beige" alt="0 Google Scholar citations"> </a> </div> </div> </div> </li> </ol> <h2 class="bibliography">2018</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">TAND</abbr> </div> <div id="dzyubenko_role_2018" class="col-sm-8"> <div class="title">Role of immune responses for extracellular matrix remodeling in the ischemic brain</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Therapeutic Advances in Neurological Disorders</em>, Jan 2018 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="http://journals.sagepub.com/doi/10.1177/1756286418818092" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Role%20of%20immune%20responses%20for%20extracellular%20matrix%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1177/1756286418818092" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Y0pCki6q_DkC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-42-4285F4?logo=googlescholar&amp;labelColor=beige" alt="42 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Neuroinflammation is one of the key components contributing to the devastating outcome of ischemic stroke. Starting with stroke onset, inflammatory processes contribute both to cell damage and tissue remodeling. The early release of alarmins triggers the upregulation of multiple proinflammatory cytokines, resulting in the compromised integrity of the blood–brain barrier. From this moment on, the infiltration of peripheral immune cells, reactive gliosis and extracellular matrix (ECM) alterations become intricately intertwined and act as one unit during the tissue remodeling. While the mechanisms of leukocyte and glia activation are amply reviewed, the field of ECM modification remains as yet under explored. In this review, we focus on the interplay between neuroinflammatory cascades and ECM in the ischemic brain. By summarizing the currently available evidence obtained by in vitro research, animal experimentation and human studies, we aim to propose a new direction for the future investigation of stroke recovery.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2016</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Col.Med</abbr> </div> <div id="arango-davila_evaluacion_2016" class="col-sm-8"> <div class="title">Evaluación de la diásquisis transcallosa en un modelo murino de isquemia cerebral focal</div> <div class="author"> Cesar Augusto Arango-Dávila , Beatriz E. Munoz , Daniel Manrique Castaño , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Laura Potes, John Umbarila' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Colombia Medica</em>, Jun 2016 </div> <div class="periodical"> Number: 2 </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://colombiamedica.univalle.edu.co/index.php/comedica/article/view/2146" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Arango-D%C3%A1vila%20et%20al.%20-%202016%20-%20Evaluaci%C3%B3n%20de%20la%20di%C3%A1squisis%20transcallosa%20en%20un%20mod.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.25100/cm.v47i2.2146" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:IjCSPb-OGe4C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-8-4285F4?logo=googlescholar&amp;labelColor=beige" alt="8 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Objetivo:Evaluar los cambios exofocales transcallosos después de lesión isquémica focal en ratas, mediante marcación inmunohistoquímica con el anticuerpo monoclonal anti-NeuN (Mouse Anti-Neuronal Nuclei).Métodos:Se intervinieron 28 ratas machos Wistar adultas. Mediante el modelo experimental de isquemia cerebral focal del territorio de la arteria cerebral media por filamento intraluminal, se les ocasionó una lesión focal en el hemisferio derecho. Posteriormente se evaluó el hemisferio contralateral, marcando la población neuronal con el anticuerpo monoclonal anti-NeuN. Se definieron cinco grupos de evaluación: uno de control, 24 horas, 96 horas, 10 días y 20 días. Se evaluaron los cambios neuronales exofocales después de la lesión con base en la observación de los cambios en la inmunoreactividad de las neuronas al NeuN.Resultados:Se redujo la inmunoreactividad en la corteza contralateral a la lesión. Este fenómeno fue más notable en las capas supragranulares después de 24 horas post isquemia. Después de 96 horas hubo una disminución generalizada de la inmmunoreactivity en las capas supra e infragranulares. A los 10 y 20 días, el tejido recobró alguna inmunoreactividad NeuN, estos cambios se dieron en la capa VI.Conclusiones:Los cambios inmunorreactivos a NeuN apoyan el proceso de diasquisis interhemisférica. Los cambios en la inmunorreactividad podrían indicar estrés metabólico secundario a la interrupción en la conectividad con el sitio de la lesión.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">208</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_topological_2018" class="col-sm-8"> <div class="title">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Dec 208 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Topological%20remodeling%20of%20cortical%20perineuronal%20ne" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2018.08.001" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Tyk-4Ss8FVUC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-32-4285F4?logo=googlescholar&amp;labelColor=beige" alt="32 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Despite the crucial role of perineuronal nets (PNNs) in neural plasticity and neurological disorders, their ultrastructural organization remains largely unresolved. We have developed a novel approach combining superresolution structured illumination microscopy (SR-SIM) and mathematical reconstruction that allows for quantitative analysis of PNN topology. Since perineuronal matrix is capable to restrict neural plasticity but at the same time is necessary to maintain synapses, we hypothesized that a beneficial post stroke recovery requires a reversible loosening of PNNs. Our results indicated that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</p> </div> </div> </div> </li></ol> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Publications | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Research articles authored by Daniel Manrique-Castano."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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class="toggle-container"> <button id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Publications</h1> <p class="post-description">Research articles authored by Daniel Manrique-Castano.</p> </header> <article> <div class="publications"> <h2 class="bibliography">2023</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">BioArx</abbr> </div> <div id="manrique-castano_dissecting_2023" class="col-sm-8"> <div class="title">Dissecting glial scar formation by spatial point pattern and topological data analysis</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Dhananjay Bhaskar , and Ayman ElAli </div> <div class="periodical"> Oct 2023 </div> <div class="periodical"> Pages: 2023.10.04.560910 Section: New Results </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.biorxiv.org/content/10.1101/2023.10.04.560910v1" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202023%20-%20Dissecting%20glial%20scar%20formation%20by%20spatial%20point.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1101/2023.10.04.560910" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-N/A-4285F4?logo=googlescholar&amp;labelColor=beige" alt="N/A Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Glial scar formation represents a fundamental response to central nervous system (CNS) injury. It is mainly characterized by a well-defined spatial rearrangement of reactive astrocytes and microglia. The mechanisms underlying glial scar formation have been extensively studied, yet quantitative descriptors of the spatial arrangement of reactive glial cells remain limited. Here, we present a novel approach using point pattern analysis (PPA) and topological data analysis (TDA) to quantify spatial patterns of reactive glial cells after experimental ischemic stroke in mice. We provide open and reproducible tools using R and Julia to quantify spatial intensity, cell covariance and conditional distribution, cell-to-cell interactions, and short/long-scale arrangement, which collectively disentangle the arrangement patterns of the glial scar. This approach unravels a substantial divergence in the distribution of reactive astrocytes and microglia after injury that conventional analysis methods cannot fully characterize. PPA and TDA are valuable tools for studying the complex spatial arrangement of reactive glia and other nervous cells following CNS injuries and have potential applications for evaluating glial-targeted restorative therapies.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2022</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_tenascin-c_2022" class="col-sm-8"> <div class="title">Tenascin-C restricts reactive astrogliosis in the ischemic brain</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Matthias Pillath-Eilers , and <span class="more-authors" title="click to view 4 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '4 more authors' ? 'Paraskevi Vasileiadou, Jacqueline Reinhard, Andreas Faissner, Dirk M Hermann' : '4 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">4 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Jun 2022 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.sciencedirect.com/science/article/pii/S0945053X22000555" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Tenascin-C%20restricts%20reactive%20astrogliosis%20in%20the%20ischemic%20brain.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2022.04.003" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:3fE2CSJIrl8C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-7-4285F4?logo=googlescholar&amp;labelColor=beige" alt="7 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Cellular responses in glia play a key role in regulating brain remodeling post-stroke. However, excessive glial reactivity impedes post-ischemic neuroplasticity and hampers neurological recovery. While damage-associated molecular patterns and activated microglia were shown to induce astrogliosis, the molecules that restrain astrogliosis are largely unknown. We explored the role of tenascin-C (TnC), an extracellular matrix component involved in wound healing and remodeling of injured tissues, in mice exposed to ischemic stroke induced by transient intraluminal middle cerebral artery occlusion. In the healthy adult brain, TnC expression is restricted to neurogenic stem cell niches. We previously reported that TnC is upregulated in ischemic brain lesions. We herein show that the de novo expression of TnC post-stroke is closely associated with reactive astrocytes, and that astrocyte reactivity at 14 days post-ischemia is increased in TnC-deficient mice (TnC−/−). By analyzing the three-dimensional morphology of astrocytes in previously ischemic brain tissue, we revealed that TnC−/− reduces astrocytic territorial volume, branching point number, and branch length, which are presumably hallmarks of the homeostatic regulatory astrocyte state, in the post-acute stroke phase after 42 days. Interestingly, TnC−/− moderately increased aggrecan, a neuroplasticity-inhibiting proteoglycan, in the ischemic brain tissue at 42 days post-ischemia. In vitro in astrocyte-microglia cocultures, we showed that TnC−/− reduces the microglial migration speed on astrocytes and elevates intercellular adhesion molecule 1 (ICAM1) expression. Post-stroke, TnC−/− did not alter the ischemic lesion size or neurological recovery, however microglia-associated ICAM1 was upregulated in TnC−/− mice during the first week post stroke. Our data suggest that TnC plays a central role in restraining post-ischemic astrogliosis and regulating astrocyte-microglial interactions.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2021</h2> <ol class="bibliography"> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Exxon</abbr> </div> <div id="daniel_manrique-castano_neurovascular_2021" class="col-sm-8"> <div class="title">Neurovascular Reactivity in Tissue Scarring Following Cerebral Ischemia</div> <div class="author"> <em>Daniel Manrique-Castano</em>, and Ayman ElAli </div> <div class="periodical"> <em>Exon Publications</em>, Nov 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://exonpublications.com/index.php/exon/article/view/cerebral-ischemia-neurovascular-reactivity" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Daniel%20Manrique-Castano%20and%20Ayman%20ElAli%20-%202021%20-%20Neurovascular%20Reactivity%20in%20Tissue%20Scarring%20Follow.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.36255/exonpublications.cerebralischemia.2021.neurovascularreactivity" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:8k81kl-MbHgC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-3-4285F4?logo=googlescholar&amp;labelColor=beige" alt="3 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>ABSTRACT Tissue scarring upon cerebral ischemia entails a cascade of multifaceted cellular and molecular mechanisms that govern the remodeling of the neurovascular unit, which integrates neuronal, glial, and vascular functions.  The process encompasses inflammation, glial reactivity, vascular reactivity, and neuronal remodeling. In this chapter we cover three major aspects involved in tissue scarring after cerebral ischemia. First, we outline the primary cellular mechanisms underlying glial scar formation, emphasizing on the interactions between astrocytes, microglia, and mural cells, including pericytes and fibroblasts at the injury core and perilesional areas. Next, we address the key routes of extracellular matrix deposition by reactive and fibrogenic cells, including proteoglycans, tenascins, fibronectin, and collagen. Finally, we discuss the promises and challenges of manipulating tissue scarring as a strategy to promote brain structural remodeling and neurological recovery.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Front. cell. neurosci</abbr> </div> <div id="lecordier_neurovascular_2021" class="col-sm-8"> <div class="title">Neurovascular Alterations in Vascular Dementia: Emphasis on Risk Factors</div> <div class="author"> Sarah Lecordier , <em>Daniel Manrique-Castano</em>, Yara El Moghrabi , and <span class="more-authors" title="click to view 1 more author" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '1 more author' ? 'Ayman ElAli' : '1 more author'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">1 more author</span> </div> <div class="periodical"> <em>Frontiers in Aging Neuroscience</em>, Nov 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.frontiersin.org/articles/10.3389/fnagi.2021.727590" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Lecordier%20et%20al.%20-%202021%20-%20Neurovascular%20Alterations%20in%20Vascular%20Dementia%20Em.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-pmid="" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:5nxA0vEk-isC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-31-4285F4?logo=googlescholar&amp;labelColor=beige" alt="31 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Vascular dementia (VaD) constitutes the second most prevalent cause of dementia in the world after Alzheimer’s disease (AD). VaD regroups heterogeneous neurological conditions in which the decline of cognitive functions, including executive functions, is associated with structural and functional alterations in the cerebral vasculature. Among these cerebrovascular disorders, major stroke, and cerebral small vessel disease (cSVD) constitute the major risk factors for VaD. These conditions alter neurovascular functions leading to blood-brain barrier (BBB) deregulation, neurovascular coupling dysfunction, and inflammation. Accumulation of neurovascular impairments over time underlies the cognitive function decline associated with VaD. Furthermore, several vascular risk factors, such as hypertension, obesity, and diabetes have been shown to exacerbate neurovascular impairments and thus increase VaD prevalence. Importantly, air pollution constitutes an underestimated risk factor that triggers vascular dysfunction via inflammation and oxidative stress. The review summarizes the current knowledge related to the pathological mechanisms linking neurovascular impairments associated with stroke, cSVD, and vascular risk factors with a particular emphasis on air pollution, to VaD etiology and progression. Furthermore, the review discusses the major challenges to fully elucidate the pathobiology of VaD, as well as research directions to outline new therapeutic interventions.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">CMLS</abbr> </div> <div id="dzyubenko_inhibitory_2021" class="col-sm-8"> <div class="title">Inhibitory control in neuronal networks relies on the extracellular matrix integrity</div> <div class="author"> Egor Dzyubenko , Michael Fleischer , <em>Daniel Manrique-Castano</em>, and <span class="more-authors" title="click to view 4 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '4 more authors' ? 'Mina Borbor, Christoph Kleinschnitz, Andreas Faissner, Dirk M. Hermann' : '4 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">4 more authors</span> </div> <div class="periodical"> <em>Cellular and Molecular Life Sciences</em>, Jul 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://doi.org/10.1007/s00018-021-03861-3" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202021%20-%20Inhibitory%20control%20in%20neuronal%20networks%20relies%20on%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1007/s00018-021-03861-3" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:0EnyYjriUFMC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-19-4285F4?logo=googlescholar&amp;labelColor=beige" alt="19 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Inhibitory control is essential for the regulation of neuronal network activity, where excitatory and inhibitory synapses can act synergistically, reciprocally, and antagonistically. Sustained excitation-inhibition (E-I) balance, therefore, relies on the orchestrated adjustment of excitatory and inhibitory synaptic strength. While growing evidence indicates that the brain’s extracellular matrix (ECM) is a crucial regulator of excitatory synapse plasticity, it remains unclear whether and how the ECM contributes to inhibitory control in neuronal networks. Here we studied the simultaneous changes in excitatory and inhibitory connectivity after ECM depletion. We demonstrate that the ECM supports the maintenance of E-I balance by retaining inhibitory connectivity. Quantification of synapses and super-resolution microscopy showed that depletion of the ECM in mature neuronal networks preferentially decreases the density of inhibitory synapses and the size of individual inhibitory postsynaptic scaffolds. The reduction of inhibitory synapse density is partially compensated by the homeostatically increasing synaptic strength via the reduction of presynaptic GABAB receptors, as indicated by patch-clamp measurements and GABAB receptor expression quantifications. However, both spiking and bursting activity in neuronal networks is increased after ECM depletion, as indicated by multi-electrode recordings. With computational modelling, we determined that ECM depletion reduces the inhibitory connectivity to an extent that the inhibitory synapse scaling does not fully compensate for the reduced inhibitory synapse density. Our results indicate that the brain’s ECM preserves the balanced state of neuronal networks by supporting inhibitory control via inhibitory synapse stabilization, which expands the current understanding of brain activity regulation.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">BBI</abbr> </div> <div id="manrique-castano_tenascin-c_2021" class="col-sm-8"> <div class="title">Tenascin-C preserves microglia surveillance and restricts leukocyte and, more specifically, T cell infiltration of the ischemic brain</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Egor Dzyubenko , Mina Borbor , and <span class="more-authors" title="click to view 5 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '5 more authors' ? 'Paraskevi Vasileiadou, Christoph Kleinschnitz, Lars Roll, Andreas Faissner, Dirk M. Hermann' : '5 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">5 more authors</span> </div> <div class="periodical"> <em>Brain, Behavior, and Immunity</em>, Jan 2021 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.sciencedirect.com/science/article/pii/S0889159120323667" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Tenascin-C%20preserves%20microglia%20surveillance%20and%20restricts%20leukocyte.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.bbi.2020.10.016" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:UebtZRa9Y70C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-24-4285F4?logo=googlescholar&amp;labelColor=beige" alt="24 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>As an endogenous activator of toll-like receptor-4 (Tlr4), the extracellular matrix glycoprotein tenascin-C (TnC) regulates chemotaxis, phagocytosis and proinflammatory cytokine production in microglia. The role of TnC for ischemic brain injury, post-ischemic immune responses and stroke recovery has still not been evaluated. By comparing wild type and TnC−/− mice exposed to transient intraluminal middle cerebral artery occlusion (MCAO), we examined the effects of TnC deficiency for ischemic injury, neurological deficits, microglia/macrophage activation and brain leukocyte infiltration using behavioural tests, histochemical studies, Western blot, polymerase chain reaction and flow cytometry. Histochemical studies revealed that TnC was de novo expressed in the ischemic striatum, which contained the infarct core, and overlapped with the area of strongest accumulation of Iba1 + microglia/macrophages. TnC deficiency increased overall Iba1 immunoreactivity in the perilesional cortex, suggesting that TnC might restrict the distribution of microglial cells to the infarct core. By analysing microglial morphology in 3D we found that the post-ischemic loss of microglial cell territory, branching and volume at 3 and 7 days post-ischemia was amplified in the brains of TnC deficient compared with wild type mice. Microglial cell number was not different between genotypes. Hence, TnC deficiency reduced tissue surveillance by microglial cells. Concomitantly, the number of infiltrating leukocytes and, more specifically, T cells was increased in the ischemic brain parenchyma of TnC deficient compared with wild type mice. Ischemic injury and neurological deficits were not affected by TnC deficiency. We propose that the reduced microglia surveillance in TnC deficient mice might favour leukocyte accumulation in the ischemic brain.</p> </div> </div> </div> </li> </ol> <h2 class="bibliography">2019</h2> <ol class="bibliography"> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Front. cell. neurosci</abbr> </div> <div id="manrique-castano_deactivation_2019" class="col-sm-8"> <div class="title">Deactivation of ATP-Binding Cassette Transporters ABCB1 and ABCC1 Does Not Influence Post-ischemic Neurological Deficits, Secondary Neurodegeneration and Neurogenesis, but Induces Subtle Microglial Morphological Changes</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Maryam Sardari , Tayana Carvalho , and <span class="more-authors" title="click to view 5 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '5 more authors' ? 'Thorsten R. Doeppner, Aurel Popa-Wagner, Christoph Kleinschnitz, Andrew Chan, Dirk M. Hermann' : '5 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">5 more authors</span> </div> <div class="periodical"> <em>Frontiers in Cellular Neuroscience</em>, Jan 2019 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://www.frontiersin.org/articles/10.3389/fncel.2019.00412" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202019%20-%20Deactivation%20of%20ATP-Binding%20Cassette%20Transporters%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-pmid="" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:YsMSGLbcyi4C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-6-4285F4?logo=googlescholar&amp;labelColor=beige" alt="6 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>ATP-binding cassette (ABC) transporters prevent the access of pharmacological compounds to the ischemic brain, thereby impeding the efficacy of stroke therapies. ABC transporters can be deactivated by selective inhibitors, which potently increase the brain accumulation of drugs. Concerns have been raised that long-term ABC transporter deactivation may promote neuronal degeneration and, under conditions of ischemic stroke, compromise neurological recovery. To elucidate this issue, we exposed male C57BL/6 mice to transient intraluminal middle cerebral artery occlusion (MCAO) and examined the effects of the selective ABCB1 inhibitor tariquidar (8 mg/kg/day) or ABCC1 inhibitor MK-571 (10 mg/kg/day), which were administered alone or in combination with each other over up to 28 days, on neurological recovery and brain injury. Mice were sacrificed after 14, 28, or 56 days. The Clark score, RotaRod, tight rope, and open field tests revealed reproducible motor-coordination deficits in mice exposed to intraluminal MCAO, which were not influenced by ABCB1, ABCC1, or combined ABCB1 and ABCC1 deactivation. Brain volume, striatum volume, and corpus callosum thickness were not altered by ABCB1, ABCC1 or ABCB1, and ABCC1 inhibitors. Similarly, neuronal survival and reactive astrogliosis, evaluated by NeuN and GFAP immunohistochemistry in the ischemic striatum, were unchanged. Iba1 immunohistochemistry revealed no changes of the overall density of activated microglia in the ischemic striatum of ABC transporter inhibitor treated mice, but subtle changes of microglial morphology, that is, reduced microglial cell volume by ABCB1 deactivation after 14 and 28 days and reduced microglial ramification by ABCB1, ABCC1 and combined ABCB1 and ABCC1 deactivation after 56 days. Endogenous neurogenesis, assessed by BrdU incorporation analysis, was not influenced by ABCB1, ABCC1 or combined ABCB1 and ABCC1 deactivation. Taken together, this study could not detect any exacerbation of neurological deficits or brain injury after long-term ABC transporter deactivation in this preclinical stroke model.</p> </div> </div> </div> </li> <li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">EJN</abbr> </div> <div id="manrique-castano_encods_2019" class="col-sm-8"> <div class="title">ENCODS: A novel initiative to inspire young neuroscientists</div> <div class="author"> <em>Daniel Manrique-Castano</em>, Adriana Casteren , Boris Bouazza-Arostegui , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Donald Iain MacDonald, Paul Pfeiffer' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>European Journal of Neuroscience</em>, Jan 2019 </div> <div class="periodical"> _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ejn.14428 </div> <div class="links"> <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/ejn.14428" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Manrique-Castano%20et%20al.%20-%202019%20-%20ENCODS%20A%20novel%20initiative%20to%20inspire%20young%20neuros.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1111/ejn.14428" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:W7OEmFMy1HYC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-0-4285F4?logo=googlescholar&amp;labelColor=beige" alt="0 Google Scholar citations"> </a> </div> </div> </div> </li> </ol> <h2 class="bibliography">2018</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">TAND</abbr> </div> <div id="dzyubenko_role_2018" class="col-sm-8"> <div class="title">Role of immune responses for extracellular matrix remodeling in the ischemic brain</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Therapeutic Advances in Neurological Disorders</em>, Jan 2018 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="http://journals.sagepub.com/doi/10.1177/1756286418818092" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Role%20of%20immune%20responses%20for%20extracellular%20matrix%20.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1177/1756286418818092" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Y0pCki6q_DkC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-42-4285F4?logo=googlescholar&amp;labelColor=beige" alt="42 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Neuroinflammation is one of the key components contributing to the devastating outcome of ischemic stroke. Starting with stroke onset, inflammatory processes contribute both to cell damage and tissue remodeling. The early release of alarmins triggers the upregulation of multiple proinflammatory cytokines, resulting in the compromised integrity of the blood–brain barrier. From this moment on, the infiltration of peripheral immune cells, reactive gliosis and extracellular matrix (ECM) alterations become intricately intertwined and act as one unit during the tissue remodeling. While the mechanisms of leukocyte and glia activation are amply reviewed, the field of ECM modification remains as yet under explored. In this review, we focus on the interplay between neuroinflammatory cascades and ECM in the ischemic brain. By summarizing the currently available evidence obtained by in vitro research, animal experimentation and human studies, we aim to propose a new direction for the future investigation of stroke recovery.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">2016</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">Col.Med</abbr> </div> <div id="arango-davila_evaluacion_2016" class="col-sm-8"> <div class="title">Evaluación de la diásquisis transcallosa en un modelo murino de isquemia cerebral focal</div> <div class="author"> Cesar Augusto Arango-Dávila , Beatriz E. Munoz , Daniel Manrique Castaño , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Laura Potes, John Umbarila' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Colombia Medica</em>, Jun 2016 </div> <div class="periodical"> Number: 2 </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://colombiamedica.univalle.edu.co/index.php/comedica/article/view/2146" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Arango-D%C3%A1vila%20et%20al.%20-%202016%20-%20Evaluaci%C3%B3n%20de%20la%20di%C3%A1squisis%20transcallosa%20en%20un%20mod.pdf" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.25100/cm.v47i2.2146" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:IjCSPb-OGe4C" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-8-4285F4?logo=googlescholar&amp;labelColor=beige" alt="8 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Objetivo:Evaluar los cambios exofocales transcallosos después de lesión isquémica focal en ratas, mediante marcación inmunohistoquímica con el anticuerpo monoclonal anti-NeuN (Mouse Anti-Neuronal Nuclei).Métodos:Se intervinieron 28 ratas machos Wistar adultas. Mediante el modelo experimental de isquemia cerebral focal del territorio de la arteria cerebral media por filamento intraluminal, se les ocasionó una lesión focal en el hemisferio derecho. Posteriormente se evaluó el hemisferio contralateral, marcando la población neuronal con el anticuerpo monoclonal anti-NeuN. Se definieron cinco grupos de evaluación: uno de control, 24 horas, 96 horas, 10 días y 20 días. Se evaluaron los cambios neuronales exofocales después de la lesión con base en la observación de los cambios en la inmunoreactividad de las neuronas al NeuN.Resultados:Se redujo la inmunoreactividad en la corteza contralateral a la lesión. Este fenómeno fue más notable en las capas supragranulares después de 24 horas post isquemia. Después de 96 horas hubo una disminución generalizada de la inmmunoreactivity en las capas supra e infragranulares. A los 10 y 20 días, el tejido recobró alguna inmunoreactividad NeuN, estos cambios se dieron en la capa VI.Conclusiones:Los cambios inmunorreactivos a NeuN apoyan el proceso de diasquisis interhemisférica. Los cambios en la inmunorreactividad podrían indicar estrés metabólico secundario a la interrupción en la conectividad con el sitio de la lesión.</p> </div> </div> </div> </li></ol> <h2 class="bibliography">208</h2> <ol class="bibliography"><li> <div class="row"> <div class="col-sm-2 abbr"> <abbr class="badge">MatBio</abbr> </div> <div id="dzyubenko_topological_2018" class="col-sm-8"> <div class="title">Topological remodeling of cortical perineuronal nets in focal cerebral ischemia and mild hypoperfusion</div> <div class="author"> Egor Dzyubenko , <em>Daniel Manrique-Castano</em>, Christoph Kleinschnitz , and <span class="more-authors" title="click to view 2 more authors" onclick=" var element=$(this); element.attr('title', ''); var more_authors_text=element.text() == '2 more authors' ? 'Andreas Faissner, Dirk M. Hermann' : '2 more authors'; var cursorPosition=0; var textAdder=setInterval(function(){ element.text(more_authors_text.substring(0, cursorPosition + 1)); if (++cursorPosition == more_authors_text.length){ clearInterval(textAdder); } }, '10'); ">2 more authors</span> </div> <div class="periodical"> <em>Matrix Biology</em>, Dec 208 </div> <div class="periodical"> </div> <div class="links"> <a class="abstract btn btn-sm z-depth-0" role="button">Abs</a> <a href="https://linkinghub.elsevier.com/retrieve/pii/S0945053X18301872" class="btn btn-sm z-depth-0" role="button" rel="external nofollow noopener" target="_blank">HTML</a> <a href="/assets/pdf/Dzyubenko%20et%20al.%20-%202018%20-%20Topological%20remodeling%20of%20cortical%20perineuronal%20ne" class="btn btn-sm z-depth-0" role="button">PDF</a> </div> <div class="badges"> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.matbio.2018.08.001" data-hide-zero-citations="true" data-style="small_rectangle" data-legend="hover-right" style="margin-bottom: 3px;"></span> <a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=c1kI9gUAAAAJ&amp;citation_for_view=c1kI9gUAAAAJ:Tyk-4Ss8FVUC" aria-label="Google Scholar link" role="button" rel="external nofollow noopener" target="_blank"> <img src="https://img.shields.io/badge/scholar-32-4285F4?logo=googlescholar&amp;labelColor=beige" alt="32 Google Scholar citations"> </a> </div> <div class="abstract hidden"> <p>Despite the crucial role of perineuronal nets (PNNs) in neural plasticity and neurological disorders, their ultrastructural organization remains largely unresolved. We have developed a novel approach combining superresolution structured illumination microscopy (SR-SIM) and mathematical reconstruction that allows for quantitative analysis of PNN topology. Since perineuronal matrix is capable to restrict neural plasticity but at the same time is necessary to maintain synapses, we hypothesized that a beneficial post stroke recovery requires a reversible loosening of PNNs. Our results indicated that focal cerebral ischemia induces partial depletion of PNNs and that mild hypoperfusion not associated with ischemic injury can induce ultra-structural rearrangements in visually intact meshworks. In line with the activation of neural plasticity under mild stress stimuli, we provide evidence that topological conversion of PNNs can support post stroke neural rewiring.</p> </div> </div> </div> </li></ol> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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src="https://github-readme-stats.vercel.app/api/?username=daniel-manrique&amp;theme=default&amp;show_icons=true"> <img class="repo-img-dark w-100" alt="daniel-manrique" src="https://github-readme-stats.vercel.app/api/?username=daniel-manrique&amp;theme=dark&amp;show_icons=true"> </a> </div> </div> <hr> <div class="repositories d-flex flex-wrap flex-md-row flex-column justify-content-between align-items-center"> <div class="repo p-2 text-center"> <a href="https://github.com/ryo-ma/github-profile-trophy" rel="external nofollow noopener" target="_blank"> <span class="d-none d-sm-none d-md-block"> <img class="repo-img-light" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=flat&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=6"> <img class="repo-img-dark" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=gitdimmed&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=6"> </span> <span class="d-none d-sm-block d-md-none"> <img class="repo-img-light" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=flat&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=4"> <img class="repo-img-dark" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=gitdimmed&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=4"> </span> <span class="d-block d-sm-none"> <img class="repo-img-light" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=flat&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=3"> <img class="repo-img-dark" alt="daniel-manrique" src="https://github-profile-trophy.vercel.app/?username=daniel-manrique&amp;theme=gitdimmed&amp;locale=en&amp;margin-w=15&amp;margin-h=15&amp;no-bg=true&amp;rank=-C&amp;column=3"> </span> </a> </div> </div> <hr> <h2 id="github-repositories">GitHub Repositories</h2> <div class="repositories d-flex flex-wrap flex-md-row flex-column justify-content-between align-items-center"> <div class="repo p-2 text-center"> <a href="https://github.com/daniel-manrique/MediumBlog" rel="external nofollow noopener" target="_blank"> <img class="repo-img-light w-100" alt="daniel-manrique/MediumBlog" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=MediumBlog&amp;theme=default&amp;show_owner=false"> <img class="repo-img-dark w-100" alt="daniel-manrique/MediumBlog" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=MediumBlog&amp;theme=dark&amp;show_owner=false"> </a> </div> <div class="repo p-2 text-center"> <a href="https://github.com/daniel-manrique/daniel-manrique.github.io" rel="external nofollow noopener" target="_blank"> <img class="repo-img-light w-100" alt="daniel-manrique/daniel-manrique.github.io" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=daniel-manrique.github.io&amp;theme=default&amp;show_owner=false"> <img class="repo-img-dark w-100" alt="daniel-manrique/daniel-manrique.github.io" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=daniel-manrique.github.io&amp;theme=dark&amp;show_owner=false"> </a> </div> <div class="repo p-2 text-center"> <a href="https://github.com/daniel-manrique/Stroke_PDGFR-B_Reactivity" rel="external nofollow noopener" target="_blank"> <img class="repo-img-light w-100" alt="daniel-manrique/Stroke_PDGFR-B_Reactivity" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=Stroke_PDGFR-B_Reactivity&amp;theme=default&amp;show_owner=false"> <img class="repo-img-dark w-100" alt="daniel-manrique/Stroke_PDGFR-B_Reactivity" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=Stroke_PDGFR-B_Reactivity&amp;theme=dark&amp;show_owner=false"> </a> </div> <div class="repo p-2 text-center"> <a href="https://github.com/daniel-manrique/StarProtocol_PPA" rel="external nofollow noopener" target="_blank"> <img class="repo-img-light w-100" alt="daniel-manrique/StarProtocol_PPA" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=StarProtocol_PPA&amp;theme=default&amp;show_owner=false"> <img class="repo-img-dark w-100" alt="daniel-manrique/StarProtocol_PPA" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=StarProtocol_PPA&amp;theme=dark&amp;show_owner=false"> </a> </div> <div class="repo p-2 text-center"> <a href="https://github.com/daniel-manrique/Stroke_GlialScar_PPA-TDA" rel="external nofollow noopener" target="_blank"> <img class="repo-img-light w-100" alt="daniel-manrique/Stroke_GlialScar_PPA-TDA" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=Stroke_GlialScar_PPA-TDA&amp;theme=default&amp;show_owner=false"> <img class="repo-img-dark w-100" alt="daniel-manrique/Stroke_GlialScar_PPA-TDA" src="https://github-readme-stats.vercel.app/api/pin/?username=daniel-manrique&amp;repo=Stroke_GlialScar_PPA-TDA&amp;theme=dark&amp;show_owner=false"> </a> </div> </div> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. 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diff --git a/sitemap.xml b/sitemap.xml
index a86b6b8..bd6af71 100644
--- a/sitemap.xml
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-<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Teaching | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Courses I taught in the last five years."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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id="light-toggle" title="Change theme"> <i class="fa-solid fa-moon"></i> <i class="fa-solid fa-sun"></i> </button> </li> </ul> </div> </div> </nav> <progress id="progress" value="0"> <div class="progress-container"> <span class="progress-bar"></span> </div> </progress> </header> <div class="container mt-5" role="main"> <div class="post"> <header class="post-header"> <h1 class="post-title">Teaching</h1> <p class="post-description">Courses I taught in the last five years.</p> </header> <article> <h3 id="design-and-data-management-for-research">Design and data management for research</h3> <p><a href="https://www.usbbog.edu.co/facultades/facultad-de-psicologia/doctorado-en-neurociencia-aplicada-y-comportamiento/" rel="external nofollow noopener" target="_blank">Doctoral program in Appliend and behavioral Neuroscience</a> <br> <strong>Universidad San Buenaventura (Bogotá, Colombia)</strong> <br> <strong>Date:</strong> March 2024 -</p> <p><strong>Summary:</strong> This course prepares third-year doctoral students for the precise and coherent formulation of a doctoral research project. The course develops four modules: Research Design, Data Management, Good Scholarly Practice, and Research Project Writing. In particular, this seminar equips students with the use of several web/informatic tools that strengthen their research skills and research project within the framework of open and reproducible science.</p> <h3 id="introduction-to-data-analysis-with-r">Introduction to data analysis with R</h3> <p><strong>Lerni academy / University Duisburg-Essen (Essen, Germany)</strong> <br> <strong>Date:</strong> March - June, 2023</p> <p><strong>Summary:</strong> This course offers introductory tools for data analysis and visualization with R. In particular, the course is focused on using the <a href="https://www.tidyverse.org/" rel="external nofollow noopener" target="_blank">tidyverse</a>, <a href="https://mjskay.github.io/ggdist/" rel="external nofollow noopener" target="_blank">ggdist</a> and <a href="https://mjskay.github.io/tidybayes/" rel="external nofollow noopener" target="_blank">tidybayes</a> for data handling and visualization, and <a href="https://cran.r-project.org/web/packages/brms/index.html" rel="external nofollow noopener" target="_blank">brms</a> to perform Bayesian data analysis using MCMC. The topics covered are simple lineal regression with continuous and categorical variables, the use of different families of distributions and a touch of multilevel models.</p> <h3 id="introduction-to-neuroscience">Introduction to neuroscience</h3> <p><strong><a href="http://escueladeastronomiadecali.com/nosotros/" rel="external nofollow noopener" target="_blank">Escuela de astronomía de Cali (Cali, Colombia)</a></strong> <br> <strong>Date:</strong> September 2023</p> <p><strong>Summary:</strong> This course provides and introduction to neuroscience for students of different disciplines including biology, psychology, engineering and physics. It covers basic neuroanatomy and cell biology,together with broad functional trends of the central nervous system. the course also addressees the main neuroscience fields with its research methods and challenges.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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+<!DOCTYPE html> <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <title> Teaching | Daniel Manrique-Castano </title> <meta name="author" content="Daniel Manrique-Castano"> <meta name="description" content="Courses I taught in the last five years."> <meta name="keywords" content="jekyll, jekyll-theme, academic-website, portfolio-website"> <link rel="stylesheet" href="/assets/css/bootstrap.min.css?a4b3f509e79c54a512b890d73235ef04"> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/mdbootstrap@4.20.0/css/mdb.min.css" integrity="sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw=" crossorigin="anonymous"> <link defer rel="stylesheet" href="/assets/css/academicons.min.css?f0b7046b84e425c55f3463ac249818f5"> <link defer rel="stylesheet" type="text/css" 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<p><strong>Summary:</strong> This course prepares third-year doctoral students for the precise and coherent formulation of a doctoral research project. The course develops four modules: Research Design, Data Management, Good Scholarly Practice, and Research Project Writing. In particular, this seminar equips students with the use of several web/informatic tools that strengthen their research skills and research project within the framework of open and reproducible science.</p> <h3 id="introduction-to-data-analysis-with-r">Introduction to data analysis with R</h3> <p><strong>Lerni academy / University Duisburg-Essen (Essen, Germany)</strong> <br> <strong>Date:</strong> March - June, 2023</p> <p><strong>Summary:</strong> This course offers introductory tools for data analysis and visualization with R. In particular, the course is focused on using the <a href="https://www.tidyverse.org/" rel="external nofollow noopener" target="_blank">tidyverse</a>, <a href="https://mjskay.github.io/ggdist/" rel="external nofollow noopener" target="_blank">ggdist</a> and <a href="https://mjskay.github.io/tidybayes/" rel="external nofollow noopener" target="_blank">tidybayes</a> for data handling and visualization, and <a href="https://cran.r-project.org/web/packages/brms/index.html" rel="external nofollow noopener" target="_blank">brms</a> to perform Bayesian data analysis using MCMC. The topics covered are simple lineal regression with continuous and categorical variables, the use of different families of distributions and a touch of multilevel models.</p> <h3 id="introduction-to-neuroscience">Introduction to neuroscience</h3> <p><strong><a href="http://escueladeastronomiadecali.com/nosotros/" rel="external nofollow noopener" target="_blank">Escuela de astronomía de Cali (Cali, Colombia)</a></strong> <br> <strong>Date:</strong> September 2023</p> <p><strong>Summary:</strong> This course provides and introduction to neuroscience for students of different disciplines including biology, psychology, engineering and physics. It covers basic neuroanatomy and cell biology,together with broad functional trends of the central nervous system. the course also addressees the main neuroscience fields with its research methods and challenges.</p> </article> </div> </div> <footer class="fixed-bottom" role="contentinfo"> <div class="container mt-0"> © Copyright 2024 Daniel Manrique-Castano. Powered by <a href="https://jekyllrb.com/" target="_blank" rel="external nofollow noopener">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio" rel="external nofollow noopener" target="_blank">al-folio</a> theme. 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