From 4bf649df44c6789ee5b8ed6ddcd84736412b5819 Mon Sep 17 00:00:00 2001
From: Erik van den Bergh <erikvdbergh@gmail.com>
Date: Thu, 27 Oct 2016 11:54:36 +0100
Subject: [PATCH] fix parameter file path

---
 scripts/runRenSeq.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/runRenSeq.sh b/scripts/runRenSeq.sh
index b04a073..32e7865 100755
--- a/scripts/runRenSeq.sh
+++ b/scripts/runRenSeq.sh
@@ -122,7 +122,7 @@ done
 
 echo [`date`] inserting parameters and generating params.xml
 python $basedir/insert_params.py $basedir/param_template.xml whiteList `pwd`/$WHITELIST > params.xml
-python $basedir/insert_params.py $basedir/params.xml genomeSize $genomesize > params.xml
+python $basedir/insert_params.py params.xml genomeSize $genomesize > params.xml
 
 echo [`date`] generating input.xml
 rm input.fofn 2>/dev/null