diff --git a/agave/lib/templatesubmit.htc b/agave/lib/templatesubmit.htc index eb5c741..e895fa9 100644 --- a/agave/lib/templatesubmit.htc +++ b/agave/lib/templatesubmit.htc @@ -1,5 +1,5 @@ universe = docker -docker_image = cyverseuk/renseq:v0.2.2 +docker_image = cyverseuk/renseq:v0.2.3 output = renseq.out error = renseq.err diff --git a/scripts/runRenSeq.sh b/scripts/runRenSeq.sh index 32e7865..2111bef 100755 --- a/scripts/runRenSeq.sh +++ b/scripts/runRenSeq.sh @@ -122,7 +122,8 @@ done echo [`date`] inserting parameters and generating params.xml python $basedir/insert_params.py $basedir/param_template.xml whiteList `pwd`/$WHITELIST > params.xml -python $basedir/insert_params.py params.xml genomeSize $genomesize > params.xml +python $basedir/insert_params.py params.xml genomeSize $genomesize > temp.xml +mv temp.xml params.xml echo [`date`] generating input.xml rm input.fofn 2>/dev/null