diff --git a/.gitignore b/.gitignore index 9700a3c..c83317b 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ pririta_scripts/* example_data/* dockervol/* renseq_pipeline_documentation.pdf +renseqdata.tar.gz diff --git a/scripts/runRenSeq.sh b/scripts/runRenSeq.sh index 6f7003c..6ac9f9c 100755 --- a/scripts/runRenSeq.sh +++ b/scripts/runRenSeq.sh @@ -12,7 +12,7 @@ nproc=2 genomesize=7000000 -PARSED=`getopt --options t:g: --longoptions --genomesize --threads --name "$0" -- "$@"` +PARSED=`getopt -o t:g: --long genomesize,threads -n "$0" -- "$@"` eval set -- "$PARSED" while true; do