pytest.yml

# This workflow will install Python dependencies, run tests and black with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python build

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]
        os: [ubuntu-latest, macos-latest]
    env:
      OS: ${{ matrix.os }}
      # This is needed to avoid a warning from SQLAlchemy
      # https://sqlalche.me/e/b8d9
      # We can remove this once we upgrade to SQLAlchemy >= 2.0
      SQLALCHEMY_SILENCE_UBER_WARNING: "1"
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      #----------------------------------------------
      #  -----  install & configure poetry  -----
      #----------------------------------------------
      - name: Install Poetry
        run: |
          python -m pip install poetry
          poetry config virtualenvs.in-project true --local
      #----------------------------------------------
      #       load cached venv if cache exists
      #----------------------------------------------
      - name: Load cached venv
        id: cached-poetry-dependencies
        uses: actions/cache@v3
        with:
          path: .venv
          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }}
      #----------------------------------------------
      # install dependencies if cache does not exist
      #----------------------------------------------
      - name: Install dependencies
        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
        run: poetry install --no-interaction --no-root --all-extras --without docs
      #----------------------------------------------
      # install pycytominer
      #----------------------------------------------
      - name: Install library
        run: poetry install --no-interaction --only-root
      #----------------------------------------------
      #    run test suite and output coverage file
      #----------------------------------------------
      - name: Test with pytest
        run: |
          poetry run pytest