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Integrate the use of a reference schema for the '--sqlite' option (done for --parquet) #127

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diskontinuum opened this issue Sep 24, 2020 · 1 comment

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@diskontinuum
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Prevent column misalignment, NaN errors and other type incompatibilities also for --sqlite option, by:

  1. determining a reference schema for the table columns
  2. opening a writer
  3. converting all subsequent files to that reference schema)

The functions are already deployed for the --parquet option (merged PR "Parquet_integration #122). This issue hence boils down to hooking existing functionality up for the 'sqlite' backend.

@diskontinuum diskontinuum changed the title integrate the use of a reference schema for the '--sqlite' option (done for --parquet) Integrate the use of a reference schema for the '--sqlite' option (done for --parquet) Sep 24, 2020
@diskontinuum
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See also the discussion in this pycytominer issue.

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